Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0144 and Synpcc7942_0145 overlap by 4 nucleotides Synpcc7942_0145 and Synpcc7942_0146 are separated by 119 nucleotides Synpcc7942_0146 and Synpcc7942_0147 are separated by 303 nucleotides Synpcc7942_0147 and Synpcc7942_0148 are separated by 154 nucleotides
Synpcc7942_0144: Synpcc7942_0144 - hypothetical protein, at 146,268 to 146,720
_0144
Synpcc7942_0145: Synpcc7942_0145 - hypothetical protein, at 146,717 to 147,040
_0145
Synpcc7942_0146: Synpcc7942_0146 - hypothetical protein, at 147,160 to 147,855
_0146
Synpcc7942_0147: Synpcc7942_0147 - hypothetical protein, at 148,159 to 148,491
_0147
Synpcc7942_0148: Synpcc7942_0148 - hypothetical protein, at 148,646 to 150,190
_0148
Position (kb) 147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 146.161 kb on + strand at 146.161 kb on + strand at 146.161 kb on + strand at 146.175 kb on - strand at 146.186 kb on - strand at 146.241 kb on - strand at 146.241 kb on - strand at 146.251 kb on + strand at 146.252 kb on + strand at 146.252 kb on + strand at 146.252 kb on + strand at 146.252 kb on + strand at 146.252 kb on + strand at 146.260 kb on - strand at 146.260 kb on - strand at 146.260 kb on - strand at 146.271 kb on - strand at 146.349 kb on + strand, within Synpcc7942_0144 at 146.356 kb on - strand, within Synpcc7942_0144 at 146.389 kb on - strand at 146.391 kb on + strand, within Synpcc7942_0144 at 146.411 kb on - strand, within Synpcc7942_0144 at 146.451 kb on + strand, within Synpcc7942_0144 at 146.451 kb on + strand, within Synpcc7942_0144 at 146.451 kb on + strand, within Synpcc7942_0144 at 146.451 kb on + strand, within Synpcc7942_0144 at 146.451 kb on + strand, within Synpcc7942_0144 at 146.451 kb on + strand, within Synpcc7942_0144 at 146.451 kb on + strand, within Synpcc7942_0144 at 146.451 kb on + strand, within Synpcc7942_0144 at 146.451 kb on + strand, within Synpcc7942_0144 at 146.459 kb on - strand, within Synpcc7942_0144 at 146.459 kb on - strand, within Synpcc7942_0144 at 146.459 kb on - strand at 146.459 kb on - strand, within Synpcc7942_0144 at 146.459 kb on - strand, within Synpcc7942_0144 at 146.459 kb on - strand, within Synpcc7942_0144 at 146.461 kb on + strand, within Synpcc7942_0144 at 146.462 kb on + strand, within Synpcc7942_0144 at 146.486 kb on + strand, within Synpcc7942_0144 at 146.486 kb on + strand, within Synpcc7942_0144 at 146.486 kb on + strand, within Synpcc7942_0144 at 146.486 kb on + strand, within Synpcc7942_0144 at 146.494 kb on - strand, within Synpcc7942_0144 at 146.494 kb on - strand, within Synpcc7942_0144 at 146.497 kb on + strand, within Synpcc7942_0144 at 146.507 kb on + strand, within Synpcc7942_0144 at 146.536 kb on + strand, within Synpcc7942_0144 at 146.573 kb on - strand, within Synpcc7942_0144 at 146.616 kb on - strand, within Synpcc7942_0144 at 146.616 kb on - strand, within Synpcc7942_0144 at 146.688 kb on - strand at 146.728 kb on - strand at 146.728 kb on - strand at 146.758 kb on + strand, within Synpcc7942_0145 at 147.020 kb on + strand at 147.103 kb on + strand at 147.103 kb on + strand at 147.103 kb on + strand at 147.103 kb on + strand at 147.111 kb on - strand at 147.111 kb on - strand at 147.111 kb on - strand at 147.111 kb on - strand at 147.111 kb on - strand at 147.111 kb on - strand at 147.120 kb on - strand at 147.166 kb on + strand at 147.166 kb on + strand at 147.171 kb on + strand at 147.186 kb on - strand at 147.191 kb on - strand at 147.214 kb on + strand at 147.214 kb on + strand at 147.215 kb on - strand at 147.220 kb on + strand at 147.221 kb on + strand at 147.224 kb on - strand at 147.224 kb on - strand at 147.244 kb on + strand, within Synpcc7942_0146 at 147.262 kb on + strand, within Synpcc7942_0146 at 147.383 kb on + strand, within Synpcc7942_0146 at 147.402 kb on - strand, within Synpcc7942_0146 at 147.430 kb on + strand, within Synpcc7942_0146 at 147.430 kb on + strand, within Synpcc7942_0146 at 147.440 kb on + strand, within Synpcc7942_0146 at 147.440 kb on + strand, within Synpcc7942_0146 at 147.440 kb on + strand, within Synpcc7942_0146 at 147.448 kb on - strand, within Synpcc7942_0146 at 147.463 kb on + strand, within Synpcc7942_0146 at 147.463 kb on + strand, within Synpcc7942_0146 at 147.478 kb on + strand, within Synpcc7942_0146 at 147.501 kb on + strand, within Synpcc7942_0146 at 147.501 kb on + strand, within Synpcc7942_0146 at 147.534 kb on + strand, within Synpcc7942_0146 at 147.549 kb on - strand, within Synpcc7942_0146 at 147.554 kb on + strand, within Synpcc7942_0146 at 147.554 kb on + strand, within Synpcc7942_0146 at 147.559 kb on - strand, within Synpcc7942_0146 at 147.631 kb on + strand, within Synpcc7942_0146 at 147.634 kb on + strand at 147.636 kb on + strand, within Synpcc7942_0146 at 147.641 kb on + strand, within Synpcc7942_0146 at 147.643 kb on - strand, within Synpcc7942_0146 at 147.654 kb on + strand, within Synpcc7942_0146 at 147.655 kb on + strand, within Synpcc7942_0146 at 147.681 kb on + strand, within Synpcc7942_0146 at 147.688 kb on + strand, within Synpcc7942_0146 at 147.688 kb on + strand, within Synpcc7942_0146 at 147.706 kb on - strand, within Synpcc7942_0146 at 147.726 kb on + strand, within Synpcc7942_0146 at 147.726 kb on + strand, within Synpcc7942_0146 at 147.759 kb on + strand, within Synpcc7942_0146 at 147.759 kb on + strand, within Synpcc7942_0146 at 147.767 kb on - strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.778 kb on + strand, within Synpcc7942_0146 at 147.778 kb on - strand, within Synpcc7942_0146 at 147.778 kb on - strand, within Synpcc7942_0146 at 147.793 kb on + strand at 147.793 kb on + strand at 147.795 kb on - strand at 147.802 kb on - strand at 147.820 kb on + strand at 147.838 kb on + strand at 147.838 kb on + strand at 147.846 kb on - strand at 147.858 kb on - strand at 147.858 kb on - strand at 147.877 kb on - strand at 147.888 kb on + strand at 147.888 kb on + strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.897 kb on - strand at 147.925 kb on - strand at 147.938 kb on + strand at 147.940 kb on + strand at 147.955 kb on + strand at 147.955 kb on + strand at 147.955 kb on + strand at 147.957 kb on + strand at 147.965 kb on - strand at 147.981 kb on - strand at 148.016 kb on - strand at 148.032 kb on + strand at 148.040 kb on - strand at 148.047 kb on + strand at 148.047 kb on + strand at 148.049 kb on + strand at 148.055 kb on - strand at 148.060 kb on + strand at 148.078 kb on - strand at 148.080 kb on + strand at 148.080 kb on + strand at 148.089 kb on + strand at 148.103 kb on + strand at 148.103 kb on + strand at 148.111 kb on - strand at 148.135 kb on + strand at 148.143 kb on - strand at 148.150 kb on + strand at 148.158 kb on - strand at 148.194 kb on + strand, within Synpcc7942_0147 at 148.194 kb on + strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on - strand, within Synpcc7942_0147 at 148.253 kb on + strand, within Synpcc7942_0147 at 148.259 kb on + strand, within Synpcc7942_0147 at 148.259 kb on - strand, within Synpcc7942_0147 at 148.259 kb on - strand, within Synpcc7942_0147 at 148.259 kb on - strand, within Synpcc7942_0147 at 148.261 kb on - strand, within Synpcc7942_0147 at 148.261 kb on - strand, within Synpcc7942_0147 at 148.261 kb on - strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.292 kb on + strand, within Synpcc7942_0147 at 148.295 kb on - strand, within Synpcc7942_0147 at 148.295 kb on - strand, within Synpcc7942_0147 at 148.304 kb on + strand, within Synpcc7942_0147 at 148.312 kb on - strand, within Synpcc7942_0147 at 148.312 kb on - strand, within Synpcc7942_0147 at 148.317 kb on + strand, within Synpcc7942_0147 at 148.317 kb on + strand, within Synpcc7942_0147 at 148.376 kb on - strand, within Synpcc7942_0147 at 148.381 kb on - strand, within Synpcc7942_0147 at 148.393 kb on - strand, within Synpcc7942_0147 at 148.394 kb on - strand, within Synpcc7942_0147 at 148.408 kb on - strand, within Synpcc7942_0147 at 148.415 kb on + strand, within Synpcc7942_0147 at 148.427 kb on - strand, within Synpcc7942_0147 at 148.439 kb on + strand, within Synpcc7942_0147 at 148.466 kb on + strand at 148.505 kb on - strand at 148.519 kb on + strand at 148.522 kb on - strand at 148.522 kb on - strand at 148.524 kb on + strand at 148.532 kb on - strand at 148.569 kb on - strand at 148.570 kb on - strand at 148.592 kb on + strand at 148.596 kb on - strand at 148.607 kb on - strand at 148.625 kb on + strand at 148.636 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 146,161 + +0.8 146,161 + +1.7 146,161 + +1.7 146,175 - -0.8 146,186 - +2.8 146,241 - -1.9 146,241 - -0.7 146,251 + +0.5 146,252 + -0.8 146,252 + +1.9 146,252 + +2.6 146,252 + -2.9 146,252 + -2.3 146,260 - -0.9 146,260 - +0.1 146,260 - +2.2 146,271 - +3.0 146,349 + Synpcc7942_0144 0.18 -2.2 146,356 - Synpcc7942_0144 0.19 -0.2 146,389 - -0.2 146,391 + Synpcc7942_0144 0.27 -1.8 146,411 - Synpcc7942_0144 0.32 -1.6 146,451 + Synpcc7942_0144 0.40 -2.5 146,451 + Synpcc7942_0144 0.40 +0.5 146,451 + Synpcc7942_0144 0.40 -1.2 146,451 + Synpcc7942_0144 0.40 -2.6 146,451 + Synpcc7942_0144 0.40 +0.7 146,451 + Synpcc7942_0144 0.40 +0.7 146,451 + Synpcc7942_0144 0.40 -1.4 146,451 + Synpcc7942_0144 0.40 -1.2 146,451 + Synpcc7942_0144 0.40 +1.9 146,459 - Synpcc7942_0144 0.42 +4.5 146,459 - Synpcc7942_0144 0.42 -1.5 146,459 - +0.5 146,459 - Synpcc7942_0144 0.42 +2.3 146,459 - Synpcc7942_0144 0.42 +0.1 146,459 - Synpcc7942_0144 0.42 +0.6 146,461 + Synpcc7942_0144 0.43 -1.9 146,462 + Synpcc7942_0144 0.43 +0.3 146,486 + Synpcc7942_0144 0.48 -1.6 146,486 + Synpcc7942_0144 0.48 -2.5 146,486 + Synpcc7942_0144 0.48 +0.4 146,486 + Synpcc7942_0144 0.48 -0.8 146,494 - Synpcc7942_0144 0.50 -0.3 146,494 - Synpcc7942_0144 0.50 -0.9 146,497 + Synpcc7942_0144 0.51 +1.9 146,507 + Synpcc7942_0144 0.53 -1.4 146,536 + Synpcc7942_0144 0.59 +0.4 146,573 - Synpcc7942_0144 0.67 -0.5 146,616 - Synpcc7942_0144 0.77 +1.7 146,616 - Synpcc7942_0144 0.77 -0.8 146,688 - +2.7 146,728 - -0.9 146,728 - +0.2 146,758 + Synpcc7942_0145 0.13 +1.6 147,020 + +0.8 147,103 + +0.9 147,103 + -2.0 147,103 + -3.5 147,103 + +0.5 147,111 - -1.9 147,111 - +1.8 147,111 - +0.2 147,111 - -3.0 147,111 - -2.2 147,111 - +1.1 147,120 - -0.7 147,166 + +0.1 147,166 + -2.3 147,171 + +2.1 147,186 - -2.9 147,191 - +1.1 147,214 + +0.2 147,214 + -3.5 147,215 - -0.2 147,220 + +0.4 147,221 + +1.0 147,224 - -0.8 147,224 - -0.0 147,244 + Synpcc7942_0146 0.12 -2.1 147,262 + Synpcc7942_0146 0.15 -2.1 147,383 + Synpcc7942_0146 0.32 -0.0 147,402 - Synpcc7942_0146 0.35 -1.6 147,430 + Synpcc7942_0146 0.39 -3.1 147,430 + Synpcc7942_0146 0.39 -0.2 147,440 + Synpcc7942_0146 0.40 +0.9 147,440 + Synpcc7942_0146 0.40 -1.8 147,440 + Synpcc7942_0146 0.40 -2.2 147,448 - Synpcc7942_0146 0.41 +1.6 147,463 + Synpcc7942_0146 0.44 -1.9 147,463 + Synpcc7942_0146 0.44 +1.2 147,478 + Synpcc7942_0146 0.46 -0.2 147,501 + Synpcc7942_0146 0.49 -1.3 147,501 + Synpcc7942_0146 0.49 +0.4 147,534 + Synpcc7942_0146 0.54 -0.2 147,549 - Synpcc7942_0146 0.56 -1.7 147,554 + Synpcc7942_0146 0.57 -0.9 147,554 + Synpcc7942_0146 0.57 +4.2 147,559 - Synpcc7942_0146 0.57 -0.5 147,631 + Synpcc7942_0146 0.68 -2.0 147,634 + -0.2 147,636 + Synpcc7942_0146 0.68 +1.6 147,641 + Synpcc7942_0146 0.69 -2.8 147,643 - Synpcc7942_0146 0.69 -0.7 147,654 + Synpcc7942_0146 0.71 +1.0 147,655 + Synpcc7942_0146 0.71 +0.2 147,681 + Synpcc7942_0146 0.75 -1.0 147,688 + Synpcc7942_0146 0.76 +1.6 147,688 + Synpcc7942_0146 0.76 -1.6 147,706 - Synpcc7942_0146 0.78 -0.4 147,726 + Synpcc7942_0146 0.81 -0.6 147,726 + Synpcc7942_0146 0.81 -0.6 147,759 + Synpcc7942_0146 0.86 +0.0 147,759 + Synpcc7942_0146 0.86 -0.1 147,767 - Synpcc7942_0146 0.87 +2.4 147,770 + Synpcc7942_0146 0.88 +1.0 147,770 + Synpcc7942_0146 0.88 +0.1 147,770 + Synpcc7942_0146 0.88 +0.1 147,770 + Synpcc7942_0146 0.88 -1.4 147,778 + Synpcc7942_0146 0.89 -1.5 147,778 - Synpcc7942_0146 0.89 -0.8 147,778 - Synpcc7942_0146 0.89 +0.8 147,793 + +0.5 147,793 + -2.6 147,795 - -2.3 147,802 - +1.2 147,820 + +1.2 147,838 + -0.9 147,838 + -1.1 147,846 - +1.4 147,858 - -1.3 147,858 - +2.8 147,877 - -1.9 147,888 + +1.8 147,888 + +4.9 147,896 - -2.3 147,896 - +0.9 147,896 - +1.5 147,896 - -0.5 147,896 - -2.9 147,897 - +0.0 147,925 - +0.5 147,938 + -0.7 147,940 + -1.2 147,955 + +0.3 147,955 + +1.1 147,955 + -0.6 147,957 + +3.2 147,965 - +1.5 147,981 - +0.6 148,016 - +2.4 148,032 + +0.7 148,040 - +2.4 148,047 + -1.2 148,047 + +0.8 148,049 + +1.1 148,055 - -0.7 148,060 + -0.5 148,078 - +0.5 148,080 + +1.4 148,080 + +0.2 148,089 + +3.9 148,103 + +0.1 148,103 + +0.1 148,111 - -0.3 148,135 + -0.1 148,143 - -1.6 148,150 + -1.6 148,158 - -2.4 148,194 + Synpcc7942_0147 0.11 -2.2 148,194 + Synpcc7942_0147 0.11 -1.4 148,201 - Synpcc7942_0147 0.13 +1.4 148,201 - Synpcc7942_0147 0.13 -2.5 148,201 - Synpcc7942_0147 0.13 -0.9 148,201 - Synpcc7942_0147 0.13 +1.1 148,201 - Synpcc7942_0147 0.13 -1.1 148,201 - Synpcc7942_0147 0.13 -2.7 148,251 + Synpcc7942_0147 0.28 +1.2 148,251 + Synpcc7942_0147 0.28 -2.7 148,251 + Synpcc7942_0147 0.28 -0.5 148,251 + Synpcc7942_0147 0.28 +2.1 148,251 + Synpcc7942_0147 0.28 -0.4 148,251 - Synpcc7942_0147 0.28 -2.3 148,253 + Synpcc7942_0147 0.28 +1.7 148,259 + Synpcc7942_0147 0.30 -0.8 148,259 - Synpcc7942_0147 0.30 +2.3 148,259 - Synpcc7942_0147 0.30 +1.5 148,259 - Synpcc7942_0147 0.30 -1.0 148,261 - Synpcc7942_0147 0.31 -0.7 148,261 - Synpcc7942_0147 0.31 -2.5 148,261 - Synpcc7942_0147 0.31 +1.0 148,287 + Synpcc7942_0147 0.38 -1.7 148,287 + Synpcc7942_0147 0.38 -3.4 148,287 + Synpcc7942_0147 0.38 -0.6 148,287 + Synpcc7942_0147 0.38 +2.1 148,292 + Synpcc7942_0147 0.40 +1.6 148,295 - Synpcc7942_0147 0.41 +0.5 148,295 - Synpcc7942_0147 0.41 +2.0 148,304 + Synpcc7942_0147 0.44 +1.9 148,312 - Synpcc7942_0147 0.46 +0.5 148,312 - Synpcc7942_0147 0.46 +0.3 148,317 + Synpcc7942_0147 0.47 -0.9 148,317 + Synpcc7942_0147 0.47 -1.1 148,376 - Synpcc7942_0147 0.65 +0.9 148,381 - Synpcc7942_0147 0.67 +3.4 148,393 - Synpcc7942_0147 0.70 +0.5 148,394 - Synpcc7942_0147 0.71 +0.7 148,408 - Synpcc7942_0147 0.75 +1.1 148,415 + Synpcc7942_0147 0.77 -1.4 148,427 - Synpcc7942_0147 0.80 -1.3 148,439 + Synpcc7942_0147 0.84 +2.2 148,466 + -1.2 148,505 - +6.6 148,519 + -0.5 148,522 - +1.9 148,522 - +0.7 148,524 + -2.9 148,532 - -0.7 148,569 - +2.3 148,570 - -2.4 148,592 + -0.9 148,596 - -2.3 148,607 - -0.1 148,625 + +1.4 148,636 + -3.6
Or see this region's nucleotide sequence