Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0128

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntenvM and ntcA are separated by 231 nucleotidesntcA and Synpcc7942_0128 are separated by 92 nucleotidesSynpcc7942_0128 and Synpcc7942_0129 overlap by 4 nucleotidesSynpcc7942_0129 and Synpcc7942_0130 overlap by 56 nucleotides Synpcc7942_0126: envM - enoyl-(acyl carrier protein) reductase, at 125,382 to 126,158 envM Synpcc7942_0127: ntcA - transcriptional regulator, Crp/Fnr family, at 126,390 to 127,058 ntcA Synpcc7942_0128: Synpcc7942_0128 - hypothetical protein, at 127,151 to 128,449 _0128 Synpcc7942_0129: Synpcc7942_0129 - Resolvase, RNase H-like fold, at 128,446 to 128,877 _0129 Synpcc7942_0130: Synpcc7942_0130 - hypothetical protein, at 128,822 to 129,409 _0130 Position (kb) 127 128 129Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 126.259 kb on + strandat 126.267 kb on - strandat 126.329 kb on + strandat 126.334 kb on + strandat 126.342 kb on - strandat 126.362 kb on - strandat 126.369 kb on + strandat 126.369 kb on + strandat 126.369 kb on + strandat 126.371 kb on + strandat 126.377 kb on - strandat 127.053 kb on + strandat 127.061 kb on - strandat 127.093 kb on - strandat 127.116 kb on + strandat 127.116 kb on + strandat 127.116 kb on - strandat 127.118 kb on + strandat 127.123 kb on + strandat 127.123 kb on + strandat 127.131 kb on - strandat 127.131 kb on - strandat 127.131 kb on - strandat 127.131 kb on - strandat 127.171 kb on + strandat 127.276 kb on + strandat 127.278 kb on - strandat 127.355 kb on + strand, within Synpcc7942_0128at 127.423 kb on + strand, within Synpcc7942_0128at 127.423 kb on + strand, within Synpcc7942_0128at 127.528 kb on - strand, within Synpcc7942_0128at 127.642 kb on - strand, within Synpcc7942_0128at 127.674 kb on + strand, within Synpcc7942_0128at 127.692 kb on - strand, within Synpcc7942_0128at 127.718 kb on + strand, within Synpcc7942_0128at 127.745 kb on + strand, within Synpcc7942_0128at 127.819 kb on + strand, within Synpcc7942_0128at 127.847 kb on + strand, within Synpcc7942_0128at 127.850 kb on - strand, within Synpcc7942_0128at 127.888 kb on - strand, within Synpcc7942_0128at 127.888 kb on - strand, within Synpcc7942_0128at 127.898 kb on - strand, within Synpcc7942_0128at 127.930 kb on - strand, within Synpcc7942_0128at 127.959 kb on + strand, within Synpcc7942_0128at 128.021 kb on + strand, within Synpcc7942_0128at 128.171 kb on - strand, within Synpcc7942_0128at 128.192 kb on - strand, within Synpcc7942_0128at 128.213 kb on - strand, within Synpcc7942_0128at 128.219 kb on - strand, within Synpcc7942_0128at 128.221 kb on + strand, within Synpcc7942_0128at 128.267 kb on + strandat 128.310 kb on + strand, within Synpcc7942_0128at 128.326 kb on - strandat 128.381 kb on + strandat 128.429 kb on - strandat 128.443 kb on + strandat 128.443 kb on + strandat 128.443 kb on + strandat 128.443 kb on + strandat 128.443 kb on + strandat 128.451 kb on - strandat 128.451 kb on - strandat 128.451 kb on - strandat 128.451 kb on - strandat 128.453 kb on + strandat 128.461 kb on - strandat 128.471 kb on - strandat 128.482 kb on - strandat 128.611 kb on + strand, within Synpcc7942_0129at 128.653 kb on + strand, within Synpcc7942_0129at 128.659 kb on + strand, within Synpcc7942_0129at 128.670 kb on + strand, within Synpcc7942_0129at 128.711 kb on - strand, within Synpcc7942_0129at 128.722 kb on - strand, within Synpcc7942_0129at 128.750 kb on - strand, within Synpcc7942_0129at 128.784 kb on - strand, within Synpcc7942_0129at 128.843 kb on + strandat 128.907 kb on + strand, within Synpcc7942_0130at 128.915 kb on - strand, within Synpcc7942_0130at 128.920 kb on - strand, within Synpcc7942_0130at 128.941 kb on - strand, within Synpcc7942_0130at 128.977 kb on - strand, within Synpcc7942_0130at 129.018 kb on - strand, within Synpcc7942_0130at 129.031 kb on + strand, within Synpcc7942_0130at 129.033 kb on + strand, within Synpcc7942_0130at 129.051 kb on - strand, within Synpcc7942_0130at 129.102 kb on + strand, within Synpcc7942_0130at 129.122 kb on - strand, within Synpcc7942_0130at 129.210 kb on - strand, within Synpcc7942_0130at 129.224 kb on + strand, within Synpcc7942_0130at 129.229 kb on + strand, within Synpcc7942_0130at 129.231 kb on - strand, within Synpcc7942_0130at 129.243 kb on + strand, within Synpcc7942_0130at 129.251 kb on - strand, within Synpcc7942_0130at 129.252 kb on + strand, within Synpcc7942_0130at 129.323 kb on - strand, within Synpcc7942_0130at 129.330 kb on - strand, within Synpcc7942_0130at 129.332 kb on + strand, within Synpcc7942_0130at 129.369 kb on - strandat 129.404 kb on + strandat 129.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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126,259 + -1.5
126,267 - -2.0
126,329 + -0.9
126,334 + -2.8
126,342 - -0.9
126,362 - +1.4
126,369 + -0.9
126,369 + +2.6
126,369 + -1.7
126,371 + -2.0
126,377 - +1.3
127,053 + +3.1
127,061 - +1.8
127,093 - -3.0
127,116 + -1.7
127,116 + -0.9
127,116 - -3.0
127,118 + -1.3
127,123 + +0.1
127,123 + -0.1
127,131 - +1.3
127,131 - -2.4
127,131 - -0.9
127,131 - -1.2
127,171 + -0.9
127,276 + -2.2
127,278 - -0.5
127,355 + Synpcc7942_0128 0.16 -1.7
127,423 + Synpcc7942_0128 0.21 -1.7
127,423 + Synpcc7942_0128 0.21 -2.8
127,528 - Synpcc7942_0128 0.29 -2.7
127,642 - Synpcc7942_0128 0.38 -1.2
127,674 + Synpcc7942_0128 0.40 -0.7
127,692 - Synpcc7942_0128 0.42 -0.2
127,718 + Synpcc7942_0128 0.44 -1.2
127,745 + Synpcc7942_0128 0.46 -1.1
127,819 + Synpcc7942_0128 0.51 -1.2
127,847 + Synpcc7942_0128 0.54 -3.3
127,850 - Synpcc7942_0128 0.54 -1.9
127,888 - Synpcc7942_0128 0.57 -0.7
127,888 - Synpcc7942_0128 0.57 -0.7
127,898 - Synpcc7942_0128 0.58 -0.9
127,930 - Synpcc7942_0128 0.60 -2.7
127,959 + Synpcc7942_0128 0.62 -2.4
128,021 + Synpcc7942_0128 0.67 -0.7
128,171 - Synpcc7942_0128 0.79 -4.6
128,192 - Synpcc7942_0128 0.80 -1.8
128,213 - Synpcc7942_0128 0.82 -1.5
128,219 - Synpcc7942_0128 0.82 -2.6
128,221 + Synpcc7942_0128 0.82 -1.1
128,267 + +1.1
128,310 + Synpcc7942_0128 0.89 -1.4
128,326 - -1.6
128,381 + -1.1
128,429 - -0.5
128,443 + +1.7
128,443 + -2.2
128,443 + -0.3
128,443 + -0.8
128,443 + +1.4
128,451 - +0.7
128,451 - +2.7
128,451 - -0.2
128,451 - +0.1
128,453 + -0.5
128,461 - -3.3
128,471 - +0.5
128,482 - -3.9
128,611 + Synpcc7942_0129 0.38 -0.2
128,653 + Synpcc7942_0129 0.48 +0.5
128,659 + Synpcc7942_0129 0.49 -0.9
128,670 + Synpcc7942_0129 0.52 -2.1
128,711 - Synpcc7942_0129 0.61 -2.7
128,722 - Synpcc7942_0129 0.64 -1.4
128,750 - Synpcc7942_0129 0.70 -1.4
128,784 - Synpcc7942_0129 0.78 +1.1
128,843 + -2.3
128,907 + Synpcc7942_0130 0.14 +0.3
128,915 - Synpcc7942_0130 0.16 +1.6
128,920 - Synpcc7942_0130 0.17 +0.4
128,941 - Synpcc7942_0130 0.20 +1.4
128,977 - Synpcc7942_0130 0.26 -0.6
129,018 - Synpcc7942_0130 0.33 +3.8
129,031 + Synpcc7942_0130 0.36 +0.5
129,033 + Synpcc7942_0130 0.36 -1.4
129,051 - Synpcc7942_0130 0.39 -0.2
129,102 + Synpcc7942_0130 0.48 +1.9
129,122 - Synpcc7942_0130 0.51 +5.1
129,210 - Synpcc7942_0130 0.66 +0.5
129,224 + Synpcc7942_0130 0.68 -1.1
129,229 + Synpcc7942_0130 0.69 +5.1
129,231 - Synpcc7942_0130 0.70 +0.2
129,243 + Synpcc7942_0130 0.72 +1.4
129,251 - Synpcc7942_0130 0.73 +0.3
129,252 + Synpcc7942_0130 0.73 -2.1
129,323 - Synpcc7942_0130 0.85 +0.5
129,330 - Synpcc7942_0130 0.86 +2.1
129,332 + Synpcc7942_0130 0.87 +3.0
129,369 - -1.6
129,404 + +3.8
129,424 - +3.6

Or see this region's nucleotide sequence