Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0106

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnadE and nadD overlap by 4 nucleotidesnadD and Synpcc7942_0107 are separated by 12 nucleotides Synpcc7942_0105: nadE - NAD synthetase, at 104,653 to 106,377 nadE Synpcc7942_0106: nadD - nicotinic acid mononucleotide adenyltransferase, at 106,374 to 106,952 nadD Synpcc7942_0107: Synpcc7942_0107 - Small GTP-binding protein domain, at 106,965 to 108,383 _0107 Position (kb) 106 107Strain fitness (log2 ratio) -3 -2 -1 0 1at 106.379 kb on - strandat 106.396 kb on + strandat 106.396 kb on + strandat 106.396 kb on + strandat 106.404 kb on - strandat 106.410 kb on - strandat 106.763 kb on - strand, within nadDat 106.763 kb on - strand, within nadDat 106.801 kb on - strand, within nadDat 106.829 kb on + strand, within nadDat 106.837 kb on - strand, within nadDat 106.892 kb on - strand, within nadDat 106.935 kb on + strandat 106.954 kb on + strandat 106.955 kb on - strandat 107.004 kb on + strandat 107.030 kb on + strandat 107.038 kb on - strandat 107.040 kb on + strandat 107.079 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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106,379 - -1.7
106,396 + -0.1
106,396 + -0.6
106,396 + -0.2
106,404 - +0.8
106,410 - +1.4
106,763 - nadD Synpcc7942_0106 0.67 +0.1
106,763 - nadD Synpcc7942_0106 0.67 -0.2
106,801 - nadD Synpcc7942_0106 0.74 -1.4
106,829 + nadD Synpcc7942_0106 0.79 -1.2
106,837 - nadD Synpcc7942_0106 0.80 -1.9
106,892 - nadD Synpcc7942_0106 0.89 -1.9
106,935 + -1.5
106,954 + -2.9
106,955 - -0.6
107,004 + -2.5
107,030 + -1.4
107,038 - +0.7
107,040 + +0.5
107,079 + -3.0

Or see this region's nucleotide sequence