Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ndbA and Synpcc7942_0102 are separated by 80 nucleotides Synpcc7942_0102 and Synpcc7942_0103 are separated by 30 nucleotides Synpcc7942_0103 and Synpcc7942_0104 overlap by 14 nucleotides
Synpcc7942_0101: ndbA - type 2 NADH dehydrogenase, at 101,259 to 102,593
ndbA
Synpcc7942_0102: Synpcc7942_0102 - hypothetical protein, at 102,674 to 103,237
_0102
Synpcc7942_0103: Synpcc7942_0103 - Ankyrin, at 103,268 to 103,645
_0103
Synpcc7942_0104: Synpcc7942_0104 - hypothetical protein, at 103,632 to 104,408
_0104
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 102.615 kb on - strand at 102.635 kb on + strand at 102.635 kb on + strand at 102.680 kb on - strand at 102.809 kb on + strand, within Synpcc7942_0102 at 102.875 kb on + strand, within Synpcc7942_0102 at 102.877 kb on + strand, within Synpcc7942_0102 at 102.943 kb on - strand, within Synpcc7942_0102 at 102.948 kb on - strand, within Synpcc7942_0102 at 102.986 kb on - strand, within Synpcc7942_0102 at 103.248 kb on - strand at 103.293 kb on + strand at 103.301 kb on - strand at 103.307 kb on + strand, within Synpcc7942_0103 at 103.438 kb on - strand, within Synpcc7942_0103 at 103.508 kb on + strand, within Synpcc7942_0103 at 103.620 kb on - strand at 103.700 kb on - strand at 103.757 kb on - strand, within Synpcc7942_0104 at 103.757 kb on - strand, within Synpcc7942_0104 at 103.907 kb on - strand, within Synpcc7942_0104 at 103.947 kb on + strand, within Synpcc7942_0104 at 103.957 kb on + strand, within Synpcc7942_0104 at 103.957 kb on + strand, within Synpcc7942_0104 at 103.957 kb on + strand, within Synpcc7942_0104 at 103.989 kb on - strand, within Synpcc7942_0104 at 103.992 kb on + strand, within Synpcc7942_0104 at 104.047 kb on + strand, within Synpcc7942_0104 at 104.117 kb on + strand, within Synpcc7942_0104 at 104.137 kb on + strand, within Synpcc7942_0104 at 104.148 kb on - strand, within Synpcc7942_0104 at 104.188 kb on + strand, within Synpcc7942_0104 at 104.188 kb on + strand, within Synpcc7942_0104 at 104.196 kb on - strand, within Synpcc7942_0104 at 104.196 kb on - strand, within Synpcc7942_0104
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 102,615 - -1.1 102,635 + +0.0 102,635 + -0.8 102,680 - -1.8 102,809 + Synpcc7942_0102 0.24 +0.7 102,875 + Synpcc7942_0102 0.36 +1.4 102,877 + Synpcc7942_0102 0.36 -2.0 102,943 - Synpcc7942_0102 0.48 -1.3 102,948 - Synpcc7942_0102 0.49 +0.5 102,986 - Synpcc7942_0102 0.55 -0.7 103,248 - +2.9 103,293 + +0.1 103,301 - -0.3 103,307 + Synpcc7942_0103 0.10 -1.6 103,438 - Synpcc7942_0103 0.45 +1.7 103,508 + Synpcc7942_0103 0.63 -2.7 103,620 - -1.6 103,700 - +0.5 103,757 - Synpcc7942_0104 0.16 -0.9 103,757 - Synpcc7942_0104 0.16 +0.2 103,907 - Synpcc7942_0104 0.35 +1.5 103,947 + Synpcc7942_0104 0.41 +1.3 103,957 + Synpcc7942_0104 0.42 +0.7 103,957 + Synpcc7942_0104 0.42 +3.1 103,957 + Synpcc7942_0104 0.42 -1.5 103,989 - Synpcc7942_0104 0.46 -0.3 103,992 + Synpcc7942_0104 0.46 +1.4 104,047 + Synpcc7942_0104 0.53 -0.1 104,117 + Synpcc7942_0104 0.62 -0.6 104,137 + Synpcc7942_0104 0.65 -1.2 104,148 - Synpcc7942_0104 0.66 -1.5 104,188 + Synpcc7942_0104 0.72 +3.0 104,188 + Synpcc7942_0104 0.72 -1.2 104,196 - Synpcc7942_0104 0.73 -1.7 104,196 - Synpcc7942_0104 0.73 -2.1
Or see this region's nucleotide sequence