Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lytB and Synpcc7942_0074 are separated by 109 nucleotides Synpcc7942_0074 and pepP are separated by 115 nucleotides pepP and Synpcc7942_0076 are separated by 2 nucleotides Synpcc7942_0076 and Synpcc7942_0077 are separated by 75 nucleotides
Synpcc7942_0073: lytB - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 72,000 to 73,196
lytB
Synpcc7942_0074: Synpcc7942_0074 - hypothetical protein, at 73,306 to 73,659
_0074
Synpcc7942_0075: pepP - aminopeptidase P. Metallo peptidase. MEROPS family M24B, at 73,775 to 75,088
pepP
Synpcc7942_0076: Synpcc7942_0076 - extracellular solute-binding protein, family 3, at 75,091 to 75,852
_0076
Synpcc7942_0077: Synpcc7942_0077 - transcriptional regulator, XRE family, at 75,928 to 76,617
_0077
Position (kb) 73
74
75
76 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 73.252 kb on + strand at 73.260 kb on - strand at 73.330 kb on + strand at 73.336 kb on + strand at 73.344 kb on - strand, within Synpcc7942_0074 at 73.345 kb on - strand, within Synpcc7942_0074 at 73.379 kb on - strand at 73.389 kb on - strand, within Synpcc7942_0074 at 73.389 kb on - strand, within Synpcc7942_0074 at 73.408 kb on + strand, within Synpcc7942_0074 at 73.419 kb on + strand, within Synpcc7942_0074 at 73.422 kb on - strand, within Synpcc7942_0074 at 73.426 kb on + strand, within Synpcc7942_0074 at 73.433 kb on + strand, within Synpcc7942_0074 at 73.433 kb on + strand, within Synpcc7942_0074 at 73.441 kb on - strand, within Synpcc7942_0074 at 73.441 kb on - strand, within Synpcc7942_0074 at 73.474 kb on - strand, within Synpcc7942_0074 at 73.484 kb on + strand, within Synpcc7942_0074 at 73.489 kb on + strand, within Synpcc7942_0074 at 73.496 kb on - strand, within Synpcc7942_0074 at 73.497 kb on - strand, within Synpcc7942_0074 at 73.503 kb on + strand at 73.525 kb on - strand, within Synpcc7942_0074 at 73.525 kb on - strand, within Synpcc7942_0074 at 73.526 kb on + strand, within Synpcc7942_0074 at 73.543 kb on + strand, within Synpcc7942_0074 at 73.543 kb on + strand, within Synpcc7942_0074 at 73.544 kb on - strand, within Synpcc7942_0074 at 73.545 kb on + strand, within Synpcc7942_0074 at 73.551 kb on - strand at 73.553 kb on - strand, within Synpcc7942_0074 at 73.568 kb on - strand, within Synpcc7942_0074 at 73.580 kb on + strand, within Synpcc7942_0074 at 73.592 kb on + strand, within Synpcc7942_0074 at 73.597 kb on + strand, within Synpcc7942_0074 at 73.600 kb on - strand, within Synpcc7942_0074 at 73.600 kb on - strand, within Synpcc7942_0074 at 73.605 kb on - strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.622 kb on - strand, within Synpcc7942_0074 at 73.627 kb on - strand at 73.627 kb on - strand at 73.649 kb on + strand at 73.657 kb on - strand at 73.678 kb on + strand at 73.737 kb on - strand at 73.767 kb on + strand at 73.772 kb on + strand at 73.775 kb on - strand at 73.778 kb on + strand at 73.780 kb on - strand at 73.883 kb on + strand at 73.901 kb on - strand at 74.055 kb on - strand, within pepP at 74.196 kb on + strand, within pepP at 74.240 kb on - strand, within pepP at 74.284 kb on - strand, within pepP at 74.345 kb on + strand, within pepP at 74.516 kb on - strand, within pepP at 74.637 kb on + strand, within pepP at 74.724 kb on + strand, within pepP at 74.755 kb on + strand, within pepP at 74.756 kb on + strand, within pepP at 74.833 kb on + strand, within pepP at 74.859 kb on + strand, within pepP at 74.924 kb on + strand, within pepP at 74.926 kb on + strand, within pepP at 74.934 kb on - strand, within pepP at 74.958 kb on - strand at 75.082 kb on - strand at 75.131 kb on + strand at 75.131 kb on + strand at 75.141 kb on + strand at 75.149 kb on - strand at 75.236 kb on + strand, within Synpcc7942_0076 at 75.236 kb on + strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.320 kb on + strand, within Synpcc7942_0076 at 75.328 kb on - strand, within Synpcc7942_0076 at 75.357 kb on + strand, within Synpcc7942_0076 at 75.357 kb on + strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.436 kb on + strand, within Synpcc7942_0076 at 75.436 kb on + strand, within Synpcc7942_0076 at 75.444 kb on - strand, within Synpcc7942_0076 at 75.446 kb on + strand at 75.446 kb on + strand, within Synpcc7942_0076 at 75.454 kb on - strand, within Synpcc7942_0076 at 75.454 kb on - strand, within Synpcc7942_0076 at 75.479 kb on - strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.534 kb on - strand at 75.534 kb on - strand, within Synpcc7942_0076 at 75.557 kb on - strand, within Synpcc7942_0076 at 75.693 kb on - strand, within Synpcc7942_0076 at 75.764 kb on - strand, within Synpcc7942_0076 at 75.791 kb on + strand at 75.799 kb on - strand at 75.799 kb on - strand at 75.996 kb on + strand at 75.999 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.085 kb on + strand, within Synpcc7942_0077
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 73,252 + +2.2 73,260 - +0.6 73,330 + +0.1 73,336 + +1.1 73,344 - Synpcc7942_0074 0.11 +2.0 73,345 - Synpcc7942_0074 0.11 -1.4 73,379 - +1.1 73,389 - Synpcc7942_0074 0.23 -0.6 73,389 - Synpcc7942_0074 0.23 +0.2 73,408 + Synpcc7942_0074 0.29 +1.1 73,419 + Synpcc7942_0074 0.32 -1.0 73,422 - Synpcc7942_0074 0.33 +1.1 73,426 + Synpcc7942_0074 0.34 +1.5 73,433 + Synpcc7942_0074 0.36 +0.9 73,433 + Synpcc7942_0074 0.36 -0.8 73,441 - Synpcc7942_0074 0.38 +0.4 73,441 - Synpcc7942_0074 0.38 -2.9 73,474 - Synpcc7942_0074 0.47 +3.5 73,484 + Synpcc7942_0074 0.50 +3.3 73,489 + Synpcc7942_0074 0.52 +3.4 73,496 - Synpcc7942_0074 0.54 -1.2 73,497 - Synpcc7942_0074 0.54 +2.3 73,503 + +0.5 73,525 - Synpcc7942_0074 0.62 -2.2 73,525 - Synpcc7942_0074 0.62 -0.7 73,526 + Synpcc7942_0074 0.62 +2.0 73,543 + Synpcc7942_0074 0.67 +1.6 73,543 + Synpcc7942_0074 0.67 -1.5 73,544 - Synpcc7942_0074 0.67 -0.7 73,545 + Synpcc7942_0074 0.68 +2.8 73,551 - +1.3 73,553 - Synpcc7942_0074 0.70 -0.5 73,568 - Synpcc7942_0074 0.74 +3.0 73,580 + Synpcc7942_0074 0.77 -2.4 73,592 + Synpcc7942_0074 0.81 +1.9 73,597 + Synpcc7942_0074 0.82 -0.0 73,600 - Synpcc7942_0074 0.83 +2.1 73,600 - Synpcc7942_0074 0.83 +0.9 73,605 - Synpcc7942_0074 0.84 -1.2 73,619 + Synpcc7942_0074 0.88 +0.6 73,619 + Synpcc7942_0074 0.88 +0.5 73,619 + Synpcc7942_0074 0.88 +0.3 73,619 + Synpcc7942_0074 0.88 -2.2 73,619 + Synpcc7942_0074 0.88 +0.6 73,619 + Synpcc7942_0074 0.88 +5.3 73,622 - Synpcc7942_0074 0.89 +1.9 73,627 - -0.9 73,627 - +2.3 73,649 + -0.5 73,657 - +1.7 73,678 + -0.6 73,737 - +1.4 73,767 + +2.6 73,772 + +2.4 73,775 - -0.7 73,778 + -2.4 73,780 - +0.1 73,883 + -4.2 73,901 - -1.2 74,055 - pepP Synpcc7942_0075 0.21 -0.9 74,196 + pepP Synpcc7942_0075 0.32 -1.4 74,240 - pepP Synpcc7942_0075 0.35 -4.9 74,284 - pepP Synpcc7942_0075 0.39 -1.5 74,345 + pepP Synpcc7942_0075 0.43 -1.6 74,516 - pepP Synpcc7942_0075 0.56 -0.9 74,637 + pepP Synpcc7942_0075 0.66 -3.8 74,724 + pepP Synpcc7942_0075 0.72 -3.4 74,755 + pepP Synpcc7942_0075 0.75 -1.8 74,756 + pepP Synpcc7942_0075 0.75 -2.3 74,833 + pepP Synpcc7942_0075 0.81 -2.7 74,859 + pepP Synpcc7942_0075 0.82 -2.6 74,924 + pepP Synpcc7942_0075 0.87 -2.0 74,926 + pepP Synpcc7942_0075 0.88 -2.0 74,934 - pepP Synpcc7942_0075 0.88 -3.5 74,958 - +0.8 75,082 - +0.2 75,131 + +0.7 75,131 + -1.2 75,141 + -0.7 75,149 - -2.2 75,236 + Synpcc7942_0076 0.19 -0.1 75,236 + Synpcc7942_0076 0.19 +1.3 75,244 - Synpcc7942_0076 0.20 +4.7 75,244 - Synpcc7942_0076 0.20 +1.0 75,244 - Synpcc7942_0076 0.20 +1.6 75,320 + Synpcc7942_0076 0.30 +2.1 75,328 - Synpcc7942_0076 0.31 -0.9 75,357 + Synpcc7942_0076 0.35 +3.7 75,357 + Synpcc7942_0076 0.35 +0.5 75,397 - Synpcc7942_0076 0.40 -1.5 75,397 - Synpcc7942_0076 0.40 +0.1 75,397 - Synpcc7942_0076 0.40 +2.8 75,436 + Synpcc7942_0076 0.45 -0.5 75,436 + Synpcc7942_0076 0.45 +2.2 75,444 - Synpcc7942_0076 0.46 -0.9 75,446 + -1.6 75,446 + Synpcc7942_0076 0.47 +0.2 75,454 - Synpcc7942_0076 0.48 +2.9 75,454 - Synpcc7942_0076 0.48 -0.9 75,479 - Synpcc7942_0076 0.51 -1.5 75,526 + Synpcc7942_0076 0.57 -1.6 75,526 + Synpcc7942_0076 0.57 -0.9 75,526 + Synpcc7942_0076 0.57 +0.2 75,534 - -0.4 75,534 - Synpcc7942_0076 0.58 +2.3 75,557 - Synpcc7942_0076 0.61 +1.5 75,693 - Synpcc7942_0076 0.79 +0.7 75,764 - Synpcc7942_0076 0.88 -1.8 75,791 + -1.8 75,799 - -0.4 75,799 - -1.0 75,996 + +2.5 75,999 - Synpcc7942_0077 0.10 -2.6 76,037 - Synpcc7942_0077 0.16 -2.4 76,037 - Synpcc7942_0077 0.16 +2.5 76,085 + Synpcc7942_0077 0.23 -2.9
Or see this region's nucleotide sequence