Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bioA and Synpcc7942_0032 are separated by 110 nucleotides Synpcc7942_0032 and Synpcc7942_0033 overlap by 29 nucleotides Synpcc7942_0033 and Synpcc7942_0034 are separated by 178 nucleotides Synpcc7942_0034 and Synpcc7942_0035 are separated by 558 nucleotides
Synpcc7942_0031: bioA - aminotransferase, at 31,464 to 32,738
bioA
Synpcc7942_0032: Synpcc7942_0032 - hypothetical protein, at 32,849 to 33,202
_0032
Synpcc7942_0033: Synpcc7942_0033 - hypothetical protein, at 33,174 to 33,506
_0033
Synpcc7942_0034: Synpcc7942_0034 - N-acetylornithine aminotransferase, at 33,685 to 33,798
_0034
Synpcc7942_0035: Synpcc7942_0035 - hypothetical protein, at 34,357 to 35,115
_0035
Position (kb)
33
34 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 32.840 kb on - strand at 32.855 kb on - strand at 32.855 kb on - strand at 32.894 kb on - strand, within Synpcc7942_0032 at 32.919 kb on + strand, within Synpcc7942_0032 at 32.927 kb on - strand, within Synpcc7942_0032 at 33.047 kb on - strand, within Synpcc7942_0032 at 33.097 kb on + strand, within Synpcc7942_0032 at 33.097 kb on + strand, within Synpcc7942_0032 at 33.236 kb on + strand, within Synpcc7942_0033 at 33.254 kb on - strand, within Synpcc7942_0033 at 33.526 kb on + strand at 33.551 kb on + strand at 33.561 kb on + strand at 33.562 kb on + strand at 33.562 kb on + strand at 33.567 kb on + strand at 33.590 kb on - strand at 33.613 kb on + strand at 33.677 kb on + strand at 33.677 kb on + strand at 33.682 kb on + strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.734 kb on + strand, within Synpcc7942_0034 at 33.742 kb on - strand, within Synpcc7942_0034 at 33.904 kb on - strand at 34.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 32,840 - -3.0 32,855 - -0.8 32,855 - -0.8 32,894 - Synpcc7942_0032 0.13 -0.4 32,919 + Synpcc7942_0032 0.20 -1.8 32,927 - Synpcc7942_0032 0.22 -1.6 33,047 - Synpcc7942_0032 0.56 -1.8 33,097 + Synpcc7942_0032 0.70 -3.0 33,097 + Synpcc7942_0032 0.70 -0.3 33,236 + Synpcc7942_0033 0.19 -1.5 33,254 - Synpcc7942_0033 0.24 -1.7 33,526 + +0.9 33,551 + +0.9 33,561 + -1.3 33,562 + +0.4 33,562 + +1.7 33,567 + -1.4 33,590 - +1.0 33,613 + +3.1 33,677 + -0.6 33,677 + +2.4 33,682 + -0.7 33,685 - +1.4 33,685 - -0.3 33,685 - +0.8 33,685 - -1.1 33,685 - +1.2 33,685 - -2.5 33,685 - -2.4 33,685 - -1.2 33,734 + Synpcc7942_0034 0.43 +3.5 33,742 - Synpcc7942_0034 0.50 -1.5 33,904 - +0.4 34,092 + -2.6
Or see this region's nucleotide sequence