Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0015 and Synpcc7942_0016 are separated by 771 nucleotides Synpcc7942_0016 and eda are separated by 25 nucleotides eda and glyS are separated by 12 nucleotides
Synpcc7942_0015: Synpcc7942_0015 - putative hydroxylase, at 13,577 to 14,248
_0015
Synpcc7942_0016: Synpcc7942_0016 - hypothetical protein, at 15,020 to 15,604
_0016
Synpcc7942_0017: eda - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase, at 15,630 to 16,193
eda
Synpcc7942_0018: glyS - glycyl-tRNA synthetase subunit beta, at 16,206 to 18,392
glyS
Position (kb) 15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 14.022 kb on + strand, within Synpcc7942_0015 at 14.034 kb on + strand, within Synpcc7942_0015 at 14.042 kb on - strand, within Synpcc7942_0015 at 14.181 kb on - strand at 14.182 kb on + strand at 14.182 kb on + strand at 14.192 kb on + strand at 14.200 kb on - strand at 14.207 kb on + strand at 14.215 kb on - strand at 14.225 kb on - strand at 14.228 kb on + strand at 14.236 kb on - strand at 14.364 kb on + strand at 14.372 kb on - strand at 14.383 kb on - strand at 14.456 kb on - strand at 14.466 kb on + strand at 14.474 kb on - strand at 14.484 kb on - strand at 14.498 kb on + strand at 14.498 kb on + strand at 14.506 kb on - strand at 14.506 kb on - strand at 14.517 kb on - strand at 14.522 kb on + strand at 14.522 kb on + strand at 14.522 kb on - strand at 14.524 kb on + strand at 14.530 kb on - strand at 14.530 kb on - strand at 14.547 kb on + strand at 14.552 kb on + strand at 14.555 kb on - strand at 14.560 kb on + strand at 14.569 kb on + strand at 14.587 kb on - strand at 14.605 kb on + strand at 14.613 kb on + strand at 14.613 kb on + strand at 14.613 kb on + strand at 14.613 kb on - strand at 14.621 kb on - strand at 14.621 kb on - strand at 14.658 kb on + strand at 14.666 kb on - strand at 14.676 kb on - strand at 14.703 kb on + strand at 14.703 kb on + strand at 14.711 kb on - strand at 14.729 kb on - strand at 14.769 kb on + strand at 14.769 kb on - strand at 14.774 kb on + strand at 14.779 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.830 kb on - strand at 14.830 kb on - strand at 14.830 kb on - strand at 14.832 kb on + strand at 14.840 kb on - strand at 14.840 kb on - strand at 14.886 kb on + strand at 14.894 kb on - strand at 14.901 kb on + strand at 14.926 kb on + strand at 14.934 kb on - strand at 14.941 kb on - strand at 15.023 kb on - strand at 15.167 kb on + strand, within Synpcc7942_0016 at 15.168 kb on - strand, within Synpcc7942_0016 at 15.175 kb on - strand, within Synpcc7942_0016 at 15.175 kb on - strand, within Synpcc7942_0016 at 15.232 kb on - strand, within Synpcc7942_0016 at 15.330 kb on - strand, within Synpcc7942_0016 at 15.425 kb on - strand, within Synpcc7942_0016 at 15.425 kb on - strand, within Synpcc7942_0016 at 15.552 kb on + strand at 15.562 kb on + strand at 15.698 kb on - strand, within eda at 15.779 kb on - strand, within eda at 15.859 kb on - strand, within eda at 15.917 kb on + strand, within eda at 15.983 kb on - strand, within eda at 15.987 kb on + strand, within eda at 16.067 kb on + strand, within eda at 16.067 kb on + strand, within eda at 16.075 kb on - strand, within eda at 16.177 kb on + strand at 16.195 kb on + strand at 16.203 kb on + strand at 16.203 kb on + strand at 16.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 14,022 + Synpcc7942_0015 0.66 -0.5 14,034 + Synpcc7942_0015 0.68 -0.9 14,042 - Synpcc7942_0015 0.69 +1.5 14,181 - +0.7 14,182 + -0.4 14,182 + -2.4 14,192 + +0.6 14,200 - -0.4 14,207 + -2.4 14,215 - +2.1 14,225 - -0.4 14,228 + +1.2 14,236 - +0.4 14,364 + -1.2 14,372 - +0.3 14,383 - +0.3 14,456 - -1.1 14,466 + -1.9 14,474 - +0.6 14,484 - -0.4 14,498 + -0.8 14,498 + -1.0 14,506 - -0.2 14,506 - +1.3 14,517 - -0.9 14,522 + -2.5 14,522 + +1.4 14,522 - -2.6 14,524 + +2.6 14,530 - +1.5 14,530 - +1.3 14,547 + -0.4 14,552 + -1.0 14,555 - +1.2 14,560 + +2.5 14,569 + +1.1 14,587 - -2.1 14,605 + -0.7 14,613 + -1.6 14,613 + +1.4 14,613 + +1.0 14,613 - +1.2 14,621 - +1.1 14,621 - -1.8 14,658 + +1.4 14,666 - +1.1 14,676 - -1.5 14,703 + -2.0 14,703 + -1.3 14,711 - +0.7 14,729 - +1.0 14,769 + -1.5 14,769 - -0.1 14,774 + -2.3 14,779 - +0.4 14,801 - +2.3 14,801 - +1.3 14,801 - +1.5 14,822 + -0.5 14,822 + +3.2 14,822 + +0.5 14,822 + -3.1 14,822 + -2.2 14,822 + +0.0 14,830 - -1.1 14,830 - +1.1 14,830 - +1.3 14,832 + -1.3 14,840 - -1.8 14,840 - +3.1 14,886 + +2.0 14,894 - -0.7 14,901 + +1.4 14,926 + -0.5 14,934 - +1.8 14,941 - -1.5 15,023 - +2.7 15,167 + Synpcc7942_0016 0.25 -1.9 15,168 - Synpcc7942_0016 0.25 -1.2 15,175 - Synpcc7942_0016 0.26 -2.6 15,175 - Synpcc7942_0016 0.26 -0.0 15,232 - Synpcc7942_0016 0.36 -0.1 15,330 - Synpcc7942_0016 0.53 -0.5 15,425 - Synpcc7942_0016 0.69 +0.5 15,425 - Synpcc7942_0016 0.69 -1.2 15,552 + +1.4 15,562 + +0.4 15,698 - eda Synpcc7942_0017 0.12 -0.1 15,779 - eda Synpcc7942_0017 0.26 +0.9 15,859 - eda Synpcc7942_0017 0.41 -1.4 15,917 + eda Synpcc7942_0017 0.51 +0.1 15,983 - eda Synpcc7942_0017 0.63 -0.2 15,987 + eda Synpcc7942_0017 0.63 +1.9 16,067 + eda Synpcc7942_0017 0.77 -2.3 16,067 + eda Synpcc7942_0017 0.77 +1.8 16,075 - eda Synpcc7942_0017 0.79 -1.5 16,177 + -1.9 16,195 + +1.6 16,203 + +0.3 16,203 + +1.6 16,221 - +1.5
Or see this region's nucleotide sequence