Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_84 and Pf6N2E2_85 are separated by 128 nucleotides Pf6N2E2_85 and Pf6N2E2_86 are separated by 2 nucleotides
Pf6N2E2_84 - hypothetical protein, at 129,585 to 129,857
_84
Pf6N2E2_85 - FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin), at 129,986 to 130,294
_85
Pf6N2E2_86 - FIG022160: hypothetical toxin, at 130,297 to 130,467
_86
Position (kb)
129
130 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 128.657 kb on + strand at 128.658 kb on - strand at 128.658 kb on - strand at 128.672 kb on + strand at 128.673 kb on - strand at 128.673 kb on - strand at 128.679 kb on + strand at 128.680 kb on - strand at 128.696 kb on + strand at 128.697 kb on - strand at 128.697 kb on - strand at 128.698 kb on + strand at 128.698 kb on + strand at 128.699 kb on - strand at 128.699 kb on - strand at 128.712 kb on + strand at 128.764 kb on - strand at 128.764 kb on - strand at 128.764 kb on - strand at 128.765 kb on + strand at 128.765 kb on + strand at 128.765 kb on + strand at 128.765 kb on + strand at 128.765 kb on + strand at 128.766 kb on - strand at 128.766 kb on - strand at 128.766 kb on - strand at 128.847 kb on + strand at 128.847 kb on + strand at 128.848 kb on - strand at 128.848 kb on - strand at 128.945 kb on + strand at 129.015 kb on - strand at 129.334 kb on + strand at 129.358 kb on + strand at 129.358 kb on + strand at 129.358 kb on + strand at 129.359 kb on - strand at 129.359 kb on - strand at 129.363 kb on - strand at 129.368 kb on + strand at 129.389 kb on + strand at 129.389 kb on + strand at 129.389 kb on + strand at 129.389 kb on + strand at 129.389 kb on + strand at 129.390 kb on - strand at 129.483 kb on + strand at 129.483 kb on + strand at 129.484 kb on - strand at 129.484 kb on - strand at 129.484 kb on - strand at 129.558 kb on + strand at 129.558 kb on + strand at 129.558 kb on + strand at 129.577 kb on + strand at 129.577 kb on + strand at 129.577 kb on + strand at 129.578 kb on - strand at 129.793 kb on + strand, within Pf6N2E2_84 at 129.794 kb on - strand, within Pf6N2E2_84 at 129.855 kb on + strand at 129.855 kb on + strand at 129.855 kb on + strand at 129.873 kb on + strand at 129.873 kb on + strand at 129.873 kb on + strand at 129.873 kb on + strand at 129.873 kb on + strand at 129.874 kb on - strand at 129.874 kb on - strand at 129.874 kb on - strand at 129.874 kb on - strand at 129.874 kb on - strand at 129.874 kb on - strand at 129.874 kb on - strand at 129.874 kb on - strand at 129.874 kb on - strand at 129.875 kb on + strand at 129.875 kb on + strand at 129.875 kb on + strand at 129.875 kb on + strand at 129.875 kb on + strand at 129.892 kb on + strand at 129.892 kb on + strand at 129.893 kb on - strand at 129.915 kb on - strand at 129.915 kb on - strand at 129.921 kb on - strand at 129.921 kb on - strand at 129.976 kb on - strand at 130.003 kb on + strand at 130.004 kb on - strand at 130.004 kb on - strand at 130.061 kb on + strand, within Pf6N2E2_85 at 130.062 kb on - strand, within Pf6N2E2_85 at 130.104 kb on + strand, within Pf6N2E2_85 at 130.105 kb on - strand, within Pf6N2E2_85 at 130.105 kb on - strand, within Pf6N2E2_85 at 130.105 kb on - strand, within Pf6N2E2_85 at 130.105 kb on - strand, within Pf6N2E2_85 at 130.171 kb on - strand, within Pf6N2E2_85 at 130.227 kb on + strand, within Pf6N2E2_85 at 130.228 kb on - strand, within Pf6N2E2_85 at 130.228 kb on - strand, within Pf6N2E2_85 at 130.228 kb on - strand, within Pf6N2E2_85 at 130.228 kb on - strand, within Pf6N2E2_85 at 130.228 kb on - strand, within Pf6N2E2_85 at 130.256 kb on + strand, within Pf6N2E2_85 at 130.403 kb on + strand, within Pf6N2E2_86 at 130.403 kb on + strand, within Pf6N2E2_86 at 130.404 kb on - strand, within Pf6N2E2_86 at 130.423 kb on + strand, within Pf6N2E2_86 at 130.423 kb on + strand, within Pf6N2E2_86 at 130.424 kb on - strand, within Pf6N2E2_86 at 130.424 kb on - strand, within Pf6N2E2_86 at 130.446 kb on + strand, within Pf6N2E2_86 at 130.446 kb on + strand, within Pf6N2E2_86 at 130.447 kb on - strand, within Pf6N2E2_86 at 130.587 kb on + strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.588 kb on - strand at 130.613 kb on - strand at 130.743 kb on + strand at 130.743 kb on + strand at 130.744 kb on - strand at 130.754 kb on + strand at 130.754 kb on + strand at 130.754 kb on + strand at 130.755 kb on - strand at 130.755 kb on - strand at 130.755 kb on - strand at 130.764 kb on - strand at 130.812 kb on + strand at 130.812 kb on + strand at 130.812 kb on + strand at 130.812 kb on + strand at 130.813 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 128,657 + +0.5 128,658 - -1.1 128,658 - +0.7 128,672 + +0.6 128,673 - +0.3 128,673 - +0.8 128,679 + +1.5 128,680 - -1.2 128,696 + -0.1 128,697 - +1.4 128,697 - +0.0 128,698 + +1.3 128,698 + +0.0 128,699 - +0.7 128,699 - +0.2 128,712 + +0.7 128,764 - -0.4 128,764 - +0.7 128,764 - -2.0 128,765 + -0.0 128,765 + -1.1 128,765 + -1.9 128,765 + +0.4 128,765 + +0.9 128,766 - +1.8 128,766 - +0.6 128,766 - +1.5 128,847 + +1.9 128,847 + +1.3 128,848 - +0.1 128,848 - +1.9 128,945 + +0.0 129,015 - -0.4 129,334 + +0.8 129,358 + +1.2 129,358 + -1.6 129,358 + -1.5 129,359 - -0.1 129,359 - +0.3 129,363 - +0.8 129,368 + -0.3 129,389 + +0.2 129,389 + +1.0 129,389 + +0.7 129,389 + +0.1 129,389 + +0.1 129,390 - +1.4 129,483 + -0.2 129,483 + +0.8 129,484 - +0.2 129,484 - +1.5 129,484 - -0.2 129,558 + -1.8 129,558 + +1.3 129,558 + -1.5 129,577 + -0.1 129,577 + -0.1 129,577 + +0.2 129,578 - -1.2 129,793 + Pf6N2E2_84 0.76 -1.1 129,794 - Pf6N2E2_84 0.77 -0.2 129,855 + -0.6 129,855 + +1.1 129,855 + -1.3 129,873 + +0.1 129,873 + +0.9 129,873 + -1.0 129,873 + -1.3 129,873 + +0.2 129,874 - -0.0 129,874 - +1.3 129,874 - -0.3 129,874 - -0.4 129,874 - -1.1 129,874 - +1.5 129,874 - +0.6 129,874 - +0.1 129,874 - -0.2 129,875 + -0.5 129,875 + -0.6 129,875 + +0.2 129,875 + -0.0 129,875 + +0.8 129,892 + -0.2 129,892 + +0.6 129,893 - +0.4 129,915 - +0.6 129,915 - -0.3 129,921 - +0.6 129,921 - -0.3 129,976 - +0.8 130,003 + -0.9 130,004 - -0.3 130,004 - +0.1 130,061 + Pf6N2E2_85 0.24 +0.1 130,062 - Pf6N2E2_85 0.25 -1.5 130,104 + Pf6N2E2_85 0.38 -0.3 130,105 - Pf6N2E2_85 0.39 +0.0 130,105 - Pf6N2E2_85 0.39 +0.1 130,105 - Pf6N2E2_85 0.39 +0.7 130,105 - Pf6N2E2_85 0.39 +0.5 130,171 - Pf6N2E2_85 0.60 +0.4 130,227 + Pf6N2E2_85 0.78 -1.6 130,228 - Pf6N2E2_85 0.78 +0.1 130,228 - Pf6N2E2_85 0.78 +0.4 130,228 - Pf6N2E2_85 0.78 +0.7 130,228 - Pf6N2E2_85 0.78 +2.9 130,228 - Pf6N2E2_85 0.78 +0.4 130,256 + Pf6N2E2_85 0.87 +0.2 130,403 + Pf6N2E2_86 0.62 -1.2 130,403 + Pf6N2E2_86 0.62 +0.2 130,404 - Pf6N2E2_86 0.63 +0.3 130,423 + Pf6N2E2_86 0.74 +0.3 130,423 + Pf6N2E2_86 0.74 -1.3 130,424 - Pf6N2E2_86 0.74 +0.1 130,424 - Pf6N2E2_86 0.74 -0.6 130,446 + Pf6N2E2_86 0.87 -0.2 130,446 + Pf6N2E2_86 0.87 -1.7 130,447 - Pf6N2E2_86 0.88 -1.2 130,587 + +1.0 130,587 + -0.7 130,587 + -1.1 130,588 - +0.6 130,613 - +0.0 130,743 + -0.2 130,743 + +0.5 130,744 - +0.5 130,754 + -0.4 130,754 + -0.2 130,754 + +0.4 130,755 - +1.1 130,755 - +0.8 130,755 - +0.1 130,764 - +0.5 130,812 + +1.2 130,812 + -0.5 130,812 + -2.2 130,812 + +0.2 130,813 - -0.5
Or see this region's nucleotide sequence