Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_787 and Pf6N2E2_788 are separated by 486 nucleotides Pf6N2E2_788 and Pf6N2E2_789 are separated by 283 nucleotides
Pf6N2E2_787 - YD repeat protein, at 901,796 to 906,883
_787
Pf6N2E2_788 - hypothetical protein, at 907,370 to 909,799
_788
Pf6N2E2_789 - hypothetical protein, at 910,083 to 911,894
_789
Position (kb) 907
908
909
910 Strain fitness (log2 ratio) -2
-1
0
1
2 at 906.388 kb on + strand at 906.390 kb on + strand at 906.390 kb on + strand at 906.423 kb on + strand at 906.537 kb on + strand at 906.933 kb on + strand at 907.030 kb on + strand at 907.141 kb on + strand at 907.322 kb on - strand at 907.322 kb on - strand at 907.328 kb on - strand at 907.444 kb on + strand at 907.463 kb on + strand at 907.463 kb on + strand at 908.434 kb on + strand, within Pf6N2E2_788 at 908.632 kb on + strand, within Pf6N2E2_788 at 909.055 kb on + strand, within Pf6N2E2_788 at 909.080 kb on + strand, within Pf6N2E2_788 at 909.080 kb on + strand, within Pf6N2E2_788 at 909.356 kb on + strand, within Pf6N2E2_788 at 909.357 kb on - strand, within Pf6N2E2_788 at 909.362 kb on + strand, within Pf6N2E2_788 at 909.362 kb on + strand, within Pf6N2E2_788 at 909.362 kb on + strand, within Pf6N2E2_788 at 909.426 kb on - strand, within Pf6N2E2_788 at 909.804 kb on + strand at 909.804 kb on + strand at 909.805 kb on - strand at 909.879 kb on + strand at 909.889 kb on - strand at 909.889 kb on - strand at 909.998 kb on - strand at 910.182 kb on + strand at 910.182 kb on + strand at 910.183 kb on - strand at 910.183 kb on - strand at 910.276 kb on - strand, within Pf6N2E2_789 at 910.276 kb on - strand, within Pf6N2E2_789 at 910.383 kb on + strand, within Pf6N2E2_789 at 910.383 kb on + strand, within Pf6N2E2_789 at 910.383 kb on + strand, within Pf6N2E2_789 at 910.384 kb on - strand, within Pf6N2E2_789 at 910.384 kb on - strand, within Pf6N2E2_789 at 910.444 kb on - strand, within Pf6N2E2_789 at 910.464 kb on - strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.589 kb on + strand, within Pf6N2E2_789 at 910.590 kb on - strand, within Pf6N2E2_789 at 910.590 kb on - strand, within Pf6N2E2_789 at 910.590 kb on - strand, within Pf6N2E2_789 at 910.590 kb on - strand, within Pf6N2E2_789 at 910.590 kb on - strand, within Pf6N2E2_789 at 910.590 kb on - strand, within Pf6N2E2_789 at 910.640 kb on + strand, within Pf6N2E2_789 at 910.676 kb on + strand, within Pf6N2E2_789 at 910.743 kb on - strand, within Pf6N2E2_789 at 910.743 kb on - strand, within Pf6N2E2_789 at 910.761 kb on + strand, within Pf6N2E2_789 at 910.761 kb on + strand, within Pf6N2E2_789
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 906,388 + -0.2 906,390 + +2.0 906,390 + +0.5 906,423 + -0.7 906,537 + -0.5 906,933 + -0.8 907,030 + +0.7 907,141 + +1.0 907,322 - +0.5 907,322 - +0.1 907,328 - +1.7 907,444 + +0.7 907,463 + +1.5 907,463 + +1.1 908,434 + Pf6N2E2_788 0.44 +1.7 908,632 + Pf6N2E2_788 0.52 +2.4 909,055 + Pf6N2E2_788 0.69 +0.5 909,080 + Pf6N2E2_788 0.70 -0.7 909,080 + Pf6N2E2_788 0.70 +1.5 909,356 + Pf6N2E2_788 0.82 +0.4 909,357 - Pf6N2E2_788 0.82 +1.1 909,362 + Pf6N2E2_788 0.82 +2.1 909,362 + Pf6N2E2_788 0.82 -0.1 909,362 + Pf6N2E2_788 0.82 -0.6 909,426 - Pf6N2E2_788 0.85 +0.4 909,804 + +0.9 909,804 + -1.2 909,805 - +1.1 909,879 + -1.1 909,889 - +0.5 909,889 - -0.9 909,998 - +2.1 910,182 + +1.2 910,182 + +2.1 910,183 - -0.2 910,183 - -1.3 910,276 - Pf6N2E2_789 0.11 +1.1 910,276 - Pf6N2E2_789 0.11 +0.3 910,383 + Pf6N2E2_789 0.17 -0.3 910,383 + Pf6N2E2_789 0.17 -0.8 910,383 + Pf6N2E2_789 0.17 -0.2 910,384 - Pf6N2E2_789 0.17 -1.0 910,384 - Pf6N2E2_789 0.17 +0.8 910,444 - Pf6N2E2_789 0.20 +0.1 910,464 - Pf6N2E2_789 0.21 -0.3 910,589 + Pf6N2E2_789 0.28 -0.1 910,589 + Pf6N2E2_789 0.28 +0.1 910,589 + Pf6N2E2_789 0.28 -2.3 910,589 + Pf6N2E2_789 0.28 +0.7 910,589 + Pf6N2E2_789 0.28 -0.8 910,589 + Pf6N2E2_789 0.28 +0.2 910,589 + Pf6N2E2_789 0.28 -0.1 910,589 + Pf6N2E2_789 0.28 +0.4 910,589 + Pf6N2E2_789 0.28 -0.0 910,589 + Pf6N2E2_789 0.28 -0.6 910,589 + Pf6N2E2_789 0.28 -0.3 910,590 - Pf6N2E2_789 0.28 +1.1 910,590 - Pf6N2E2_789 0.28 +0.1 910,590 - Pf6N2E2_789 0.28 -0.1 910,590 - Pf6N2E2_789 0.28 -0.6 910,590 - Pf6N2E2_789 0.28 -1.7 910,590 - Pf6N2E2_789 0.28 -0.3 910,640 + Pf6N2E2_789 0.31 -0.1 910,676 + Pf6N2E2_789 0.33 -0.8 910,743 - Pf6N2E2_789 0.36 -0.3 910,743 - Pf6N2E2_789 0.36 +1.0 910,761 + Pf6N2E2_789 0.37 -0.1 910,761 + Pf6N2E2_789 0.37 +0.3
Or see this region's nucleotide sequence