Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_69 and Pf6N2E2_70 are separated by 337 nucleotides Pf6N2E2_70 and Pf6N2E2_71 are separated by 63 nucleotides Pf6N2E2_71 and Pf6N2E2_72 are separated by 252 nucleotides
Pf6N2E2_69 - Probable type IV pilus assembly FimV-related transmembrane protein, at 109,678 to 112,272
_69
Pf6N2E2_70 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 112,610 to 113,464
_70
Pf6N2E2_71 - Phosphoribosylanthranilate isomerase (EC 5.3.1.24), at 113,528 to 114,160
_71
Pf6N2E2_72 - Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2), at 114,413 to 115,333
_72
Position (kb)
112
113
114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 112.159 kb on + strand at 112.159 kb on + strand at 112.159 kb on + strand at 112.159 kb on + strand at 112.159 kb on + strand at 112.159 kb on + strand at 112.159 kb on + strand at 112.160 kb on - strand at 112.160 kb on - strand at 112.282 kb on + strand at 112.284 kb on + strand at 112.284 kb on + strand at 112.284 kb on + strand at 112.284 kb on + strand at 112.284 kb on + strand at 112.284 kb on + strand at 112.285 kb on - strand at 112.285 kb on - strand at 112.285 kb on - strand at 112.569 kb on + strand at 112.569 kb on + strand at 112.569 kb on + strand at 112.570 kb on - strand at 112.570 kb on - strand at 112.571 kb on + strand at 112.571 kb on + strand at 112.571 kb on + strand at 112.571 kb on + strand at 112.571 kb on + strand at 112.571 kb on + strand at 112.571 kb on + strand at 112.572 kb on - strand at 112.572 kb on - strand at 112.572 kb on - strand at 112.572 kb on - strand at 112.589 kb on - strand at 112.589 kb on - strand at 112.603 kb on + strand at 112.620 kb on + strand at 112.620 kb on + strand at 112.621 kb on - strand at 112.682 kb on + strand at 112.683 kb on - strand at 112.991 kb on + strand, within Pf6N2E2_70 at 112.992 kb on - strand, within Pf6N2E2_70 at 112.992 kb on - strand, within Pf6N2E2_70 at 113.000 kb on + strand, within Pf6N2E2_70 at 113.000 kb on + strand, within Pf6N2E2_70 at 113.001 kb on - strand, within Pf6N2E2_70 at 113.370 kb on - strand, within Pf6N2E2_70 at 113.370 kb on - strand, within Pf6N2E2_70 at 113.376 kb on + strand, within Pf6N2E2_70 at 113.417 kb on + strand at 113.417 kb on + strand at 113.624 kb on + strand, within Pf6N2E2_71 at 113.745 kb on + strand, within Pf6N2E2_71 at 113.745 kb on + strand, within Pf6N2E2_71 at 113.825 kb on + strand, within Pf6N2E2_71 at 113.826 kb on - strand, within Pf6N2E2_71 at 113.915 kb on + strand, within Pf6N2E2_71 at 113.915 kb on + strand, within Pf6N2E2_71 at 113.915 kb on + strand, within Pf6N2E2_71 at 113.916 kb on - strand, within Pf6N2E2_71 at 113.916 kb on - strand, within Pf6N2E2_71 at 114.053 kb on + strand, within Pf6N2E2_71 at 114.053 kb on + strand, within Pf6N2E2_71 at 114.196 kb on + strand at 114.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 112,159 + +1.1 112,159 + +0.2 112,159 + -0.0 112,159 + +0.3 112,159 + +0.6 112,159 + +0.1 112,159 + +0.6 112,160 - -0.0 112,160 - -0.1 112,282 + -0.1 112,284 + -0.5 112,284 + -0.4 112,284 + -0.8 112,284 + -1.2 112,284 + +0.4 112,284 + +0.5 112,285 - +1.1 112,285 - +0.8 112,285 - +0.2 112,569 + -1.3 112,569 + -0.2 112,569 + -0.7 112,570 - +0.1 112,570 - +0.5 112,571 + +0.0 112,571 + +0.9 112,571 + +0.6 112,571 + +0.1 112,571 + -1.4 112,571 + +0.2 112,571 + -0.6 112,572 - -0.1 112,572 - +0.3 112,572 - -0.6 112,572 - -0.1 112,589 - -0.2 112,589 - -2.8 112,603 + -0.1 112,620 + +2.2 112,620 + +0.0 112,621 - +1.2 112,682 + -0.1 112,683 - -0.2 112,991 + Pf6N2E2_70 0.45 -0.3 112,992 - Pf6N2E2_70 0.45 -1.9 112,992 - Pf6N2E2_70 0.45 +0.0 113,000 + Pf6N2E2_70 0.46 -1.2 113,000 + Pf6N2E2_70 0.46 -1.3 113,001 - Pf6N2E2_70 0.46 -0.3 113,370 - Pf6N2E2_70 0.89 -0.8 113,370 - Pf6N2E2_70 0.89 -1.6 113,376 + Pf6N2E2_70 0.90 -0.4 113,417 + -0.2 113,417 + +1.1 113,624 + Pf6N2E2_71 0.15 -0.8 113,745 + Pf6N2E2_71 0.34 -1.1 113,745 + Pf6N2E2_71 0.34 -2.8 113,825 + Pf6N2E2_71 0.47 -2.9 113,826 - Pf6N2E2_71 0.47 -2.5 113,915 + Pf6N2E2_71 0.61 -2.5 113,915 + Pf6N2E2_71 0.61 -1.5 113,915 + Pf6N2E2_71 0.61 -2.4 113,916 - Pf6N2E2_71 0.61 -2.5 113,916 - Pf6N2E2_71 0.61 -2.6 114,053 + Pf6N2E2_71 0.83 -2.1 114,053 + Pf6N2E2_71 0.83 -0.6 114,196 + +0.9 114,196 + +0.6
Or see this region's nucleotide sequence