Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_70

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_69 and Pf6N2E2_70 are separated by 337 nucleotidesPf6N2E2_70 and Pf6N2E2_71 are separated by 63 nucleotidesPf6N2E2_71 and Pf6N2E2_72 are separated by 252 nucleotides Pf6N2E2_69 - Probable type IV pilus assembly FimV-related transmembrane protein, at 109,678 to 112,272 _69 Pf6N2E2_70 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 112,610 to 113,464 _70 Pf6N2E2_71 - Phosphoribosylanthranilate isomerase (EC 5.3.1.24), at 113,528 to 114,160 _71 Pf6N2E2_72 - Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2), at 114,413 to 115,333 _72 Position (kb) 112 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 112.159 kb on + strandat 112.159 kb on + strandat 112.159 kb on + strandat 112.159 kb on + strandat 112.159 kb on + strandat 112.159 kb on + strandat 112.159 kb on + strandat 112.160 kb on - strandat 112.160 kb on - strandat 112.282 kb on + strandat 112.284 kb on + strandat 112.284 kb on + strandat 112.284 kb on + strandat 112.284 kb on + strandat 112.284 kb on + strandat 112.284 kb on + strandat 112.285 kb on - strandat 112.285 kb on - strandat 112.285 kb on - strandat 112.569 kb on + strandat 112.569 kb on + strandat 112.569 kb on + strandat 112.570 kb on - strandat 112.570 kb on - strandat 112.571 kb on + strandat 112.571 kb on + strandat 112.571 kb on + strandat 112.571 kb on + strandat 112.571 kb on + strandat 112.571 kb on + strandat 112.571 kb on + strandat 112.572 kb on - strandat 112.572 kb on - strandat 112.572 kb on - strandat 112.572 kb on - strandat 112.589 kb on - strandat 112.589 kb on - strandat 112.603 kb on + strandat 112.620 kb on + strandat 112.620 kb on + strandat 112.621 kb on - strandat 112.682 kb on + strandat 112.683 kb on - strandat 112.991 kb on + strand, within Pf6N2E2_70at 112.992 kb on - strand, within Pf6N2E2_70at 112.992 kb on - strand, within Pf6N2E2_70at 113.000 kb on + strand, within Pf6N2E2_70at 113.000 kb on + strand, within Pf6N2E2_70at 113.001 kb on - strand, within Pf6N2E2_70at 113.370 kb on - strand, within Pf6N2E2_70at 113.370 kb on - strand, within Pf6N2E2_70at 113.376 kb on + strand, within Pf6N2E2_70at 113.417 kb on + strandat 113.417 kb on + strandat 113.624 kb on + strand, within Pf6N2E2_71at 113.745 kb on + strand, within Pf6N2E2_71at 113.745 kb on + strand, within Pf6N2E2_71at 113.825 kb on + strand, within Pf6N2E2_71at 113.826 kb on - strand, within Pf6N2E2_71at 113.915 kb on + strand, within Pf6N2E2_71at 113.915 kb on + strand, within Pf6N2E2_71at 113.915 kb on + strand, within Pf6N2E2_71at 113.916 kb on - strand, within Pf6N2E2_71at 113.916 kb on - strand, within Pf6N2E2_71at 114.053 kb on + strand, within Pf6N2E2_71at 114.053 kb on + strand, within Pf6N2E2_71at 114.196 kb on + strandat 114.196 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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112,159 + +1.1
112,159 + +0.2
112,159 + -0.0
112,159 + +0.3
112,159 + +0.6
112,159 + +0.1
112,159 + +0.6
112,160 - -0.0
112,160 - -0.1
112,282 + -0.1
112,284 + -0.5
112,284 + -0.4
112,284 + -0.8
112,284 + -1.2
112,284 + +0.4
112,284 + +0.5
112,285 - +1.1
112,285 - +0.8
112,285 - +0.2
112,569 + -1.3
112,569 + -0.2
112,569 + -0.7
112,570 - +0.1
112,570 - +0.5
112,571 + +0.0
112,571 + +0.9
112,571 + +0.6
112,571 + +0.1
112,571 + -1.4
112,571 + +0.2
112,571 + -0.6
112,572 - -0.1
112,572 - +0.3
112,572 - -0.6
112,572 - -0.1
112,589 - -0.2
112,589 - -2.8
112,603 + -0.1
112,620 + +2.2
112,620 + +0.0
112,621 - +1.2
112,682 + -0.1
112,683 - -0.2
112,991 + Pf6N2E2_70 0.45 -0.3
112,992 - Pf6N2E2_70 0.45 -1.9
112,992 - Pf6N2E2_70 0.45 +0.0
113,000 + Pf6N2E2_70 0.46 -1.2
113,000 + Pf6N2E2_70 0.46 -1.3
113,001 - Pf6N2E2_70 0.46 -0.3
113,370 - Pf6N2E2_70 0.89 -0.8
113,370 - Pf6N2E2_70 0.89 -1.6
113,376 + Pf6N2E2_70 0.90 -0.4
113,417 + -0.2
113,417 + +1.1
113,624 + Pf6N2E2_71 0.15 -0.8
113,745 + Pf6N2E2_71 0.34 -1.1
113,745 + Pf6N2E2_71 0.34 -2.8
113,825 + Pf6N2E2_71 0.47 -2.9
113,826 - Pf6N2E2_71 0.47 -2.5
113,915 + Pf6N2E2_71 0.61 -2.5
113,915 + Pf6N2E2_71 0.61 -1.5
113,915 + Pf6N2E2_71 0.61 -2.4
113,916 - Pf6N2E2_71 0.61 -2.5
113,916 - Pf6N2E2_71 0.61 -2.6
114,053 + Pf6N2E2_71 0.83 -2.1
114,053 + Pf6N2E2_71 0.83 -0.6
114,196 + +0.9
114,196 + +0.6

Or see this region's nucleotide sequence