Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_660

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_658 and Pf6N2E2_659 overlap by 4 nucleotidesPf6N2E2_659 and Pf6N2E2_660 are separated by 223 nucleotidesPf6N2E2_660 and Pf6N2E2_661 are separated by 168 nucleotides Pf6N2E2_658 - sensor histidine kinase, at 762,265 to 763,575 _658 Pf6N2E2_659 - Transcriptional regulatory protein ompR, at 763,572 to 764,312 _659 Pf6N2E2_660 - hypothetical protein, at 764,536 to 764,799 _660 Pf6N2E2_661 - DipZ protein, at 764,968 to 766,179 _661 Position (kb) 764 765Strain fitness (log2 ratio) -2 -1 0 1 2at 763.567 kb on + strandat 763.568 kb on - strandat 763.616 kb on - strandat 763.616 kb on - strandat 763.642 kb on + strandat 764.006 kb on - strand, within Pf6N2E2_659at 764.006 kb on - strand, within Pf6N2E2_659at 764.074 kb on - strand, within Pf6N2E2_659at 764.246 kb on - strandat 764.286 kb on + strandat 764.287 kb on - strandat 764.287 kb on - strandat 764.349 kb on + strandat 764.384 kb on + strandat 764.385 kb on - strandat 764.385 kb on - strandat 764.385 kb on - strandat 764.385 kb on - strandat 764.394 kb on + strandat 764.395 kb on - strandat 764.510 kb on + strandat 764.511 kb on - strandat 764.554 kb on + strandat 764.555 kb on - strandat 764.632 kb on + strand, within Pf6N2E2_660at 764.632 kb on + strand, within Pf6N2E2_660at 764.633 kb on - strand, within Pf6N2E2_660at 764.725 kb on + strand, within Pf6N2E2_660at 764.726 kb on - strand, within Pf6N2E2_660at 764.938 kb on + strandat 765.682 kb on + strand, within Pf6N2E2_661at 765.682 kb on + strand, within Pf6N2E2_661at 765.682 kb on + strand, within Pf6N2E2_661at 765.683 kb on - strand, within Pf6N2E2_661at 765.683 kb on - strand, within Pf6N2E2_661at 765.683 kb on - strand, within Pf6N2E2_661at 765.683 kb on - strand, within Pf6N2E2_661

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
763,567 + -2.1
763,568 - -0.6
763,616 - +2.2
763,616 - +0.0
763,642 + -0.1
764,006 - Pf6N2E2_659 0.59 -2.1
764,006 - Pf6N2E2_659 0.59 +0.7
764,074 - Pf6N2E2_659 0.68 +1.7
764,246 - -0.1
764,286 + -1.0
764,287 - +0.7
764,287 - -0.7
764,349 + +0.7
764,384 + -0.1
764,385 - +0.7
764,385 - -2.4
764,385 - +0.9
764,385 - +0.3
764,394 + -0.5
764,395 - -1.4
764,510 + -0.8
764,511 - +1.2
764,554 + +0.0
764,555 - -1.6
764,632 + Pf6N2E2_660 0.36 -0.9
764,632 + Pf6N2E2_660 0.36 +0.2
764,633 - Pf6N2E2_660 0.37 -2.1
764,725 + Pf6N2E2_660 0.72 -0.5
764,726 - Pf6N2E2_660 0.72 -0.7
764,938 + -0.3
765,682 + Pf6N2E2_661 0.59 +1.2
765,682 + Pf6N2E2_661 0.59 -0.3
765,682 + Pf6N2E2_661 0.59 -0.3
765,683 - Pf6N2E2_661 0.59 +0.3
765,683 - Pf6N2E2_661 0.59 +1.0
765,683 - Pf6N2E2_661 0.59 -0.1
765,683 - Pf6N2E2_661 0.59 +0.3

Or see this region's nucleotide sequence