Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_656 and Pf6N2E2_657 are separated by 113 nucleotides Pf6N2E2_657 and Pf6N2E2_658 are separated by 199 nucleotides Pf6N2E2_658 and Pf6N2E2_659 overlap by 4 nucleotides Pf6N2E2_659 and Pf6N2E2_660 are separated by 223 nucleotides
Pf6N2E2_656 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 759,262 to 761,835
_656
Pf6N2E2_657 - hypothetical protein, at 761,949 to 762,065
_657
Pf6N2E2_658 - sensor histidine kinase, at 762,265 to 763,575
_658
Pf6N2E2_659 - Transcriptional regulatory protein ompR, at 763,572 to 764,312
_659
Pf6N2E2_660 - hypothetical protein, at 764,536 to 764,799
_660
Position (kb) 762
763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 761.300 kb on + strand, within Pf6N2E2_656 at 761.301 kb on - strand, within Pf6N2E2_656 at 761.448 kb on - strand, within Pf6N2E2_656 at 761.448 kb on - strand, within Pf6N2E2_656 at 761.490 kb on - strand, within Pf6N2E2_656 at 761.495 kb on + strand, within Pf6N2E2_656 at 761.496 kb on - strand, within Pf6N2E2_656 at 761.504 kb on + strand, within Pf6N2E2_656 at 761.534 kb on + strand, within Pf6N2E2_656 at 761.835 kb on + strand at 761.841 kb on + strand at 761.841 kb on + strand at 761.881 kb on + strand at 761.881 kb on + strand at 761.881 kb on + strand at 761.881 kb on + strand at 761.881 kb on + strand at 761.882 kb on - strand at 761.903 kb on + strand at 761.903 kb on + strand at 761.904 kb on - strand at 761.907 kb on + strand at 761.908 kb on - strand at 762.151 kb on + strand at 762.151 kb on + strand at 762.152 kb on - strand at 762.737 kb on + strand, within Pf6N2E2_658 at 762.997 kb on - strand, within Pf6N2E2_658 at 763.144 kb on + strand, within Pf6N2E2_658 at 763.145 kb on - strand, within Pf6N2E2_658 at 763.145 kb on - strand, within Pf6N2E2_658 at 763.235 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.328 kb on + strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.329 kb on - strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.332 kb on + strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.333 kb on - strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.334 kb on + strand, within Pf6N2E2_658 at 763.335 kb on - strand, within Pf6N2E2_658 at 763.461 kb on - strand at 763.469 kb on + strand at 763.472 kb on + strand at 763.567 kb on + strand at 763.568 kb on - strand at 763.616 kb on - strand at 763.616 kb on - strand at 763.642 kb on + strand at 764.006 kb on - strand, within Pf6N2E2_659 at 764.006 kb on - strand, within Pf6N2E2_659 at 764.074 kb on - strand, within Pf6N2E2_659 at 764.246 kb on - strand at 764.286 kb on + strand at 764.287 kb on - strand at 764.287 kb on - strand at 764.349 kb on + strand at 764.384 kb on + strand at 764.385 kb on - strand at 764.385 kb on - strand at 764.385 kb on - strand at 764.385 kb on - strand at 764.394 kb on + strand at 764.395 kb on - strand at 764.510 kb on + strand at 764.511 kb on - strand at 764.554 kb on + strand at 764.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 761,300 + Pf6N2E2_656 0.79 +0.1 761,301 - Pf6N2E2_656 0.79 +0.9 761,448 - Pf6N2E2_656 0.85 -0.7 761,448 - Pf6N2E2_656 0.85 +0.6 761,490 - Pf6N2E2_656 0.87 +0.4 761,495 + Pf6N2E2_656 0.87 -0.3 761,496 - Pf6N2E2_656 0.87 +0.8 761,504 + Pf6N2E2_656 0.87 +0.3 761,534 + Pf6N2E2_656 0.88 +0.1 761,835 + -0.2 761,841 + +0.4 761,841 + +1.4 761,881 + +0.4 761,881 + -0.7 761,881 + -0.1 761,881 + +0.3 761,881 + -1.2 761,882 - +0.2 761,903 + -0.9 761,903 + +0.6 761,904 - +2.5 761,907 + -0.6 761,908 - +0.4 762,151 + -1.6 762,151 + +2.0 762,152 - -1.0 762,737 + Pf6N2E2_658 0.36 -1.6 762,997 - Pf6N2E2_658 0.56 -2.5 763,144 + Pf6N2E2_658 0.67 -0.1 763,145 - Pf6N2E2_658 0.67 -3.7 763,145 - Pf6N2E2_658 0.67 -1.1 763,235 + Pf6N2E2_658 0.74 -1.5 763,328 + Pf6N2E2_658 0.81 +0.3 763,328 + Pf6N2E2_658 0.81 -1.0 763,328 + Pf6N2E2_658 0.81 -1.9 763,328 + Pf6N2E2_658 0.81 -2.5 763,328 + Pf6N2E2_658 0.81 -1.3 763,328 + Pf6N2E2_658 0.81 -2.5 763,329 - Pf6N2E2_658 0.81 +0.2 763,329 - Pf6N2E2_658 0.81 -2.1 763,329 - Pf6N2E2_658 0.81 -2.8 763,329 - Pf6N2E2_658 0.81 -2.5 763,329 - Pf6N2E2_658 0.81 -1.7 763,329 - Pf6N2E2_658 0.81 -0.5 763,332 + Pf6N2E2_658 0.81 -0.2 763,332 + Pf6N2E2_658 0.81 -0.3 763,332 + Pf6N2E2_658 0.81 -2.1 763,332 + Pf6N2E2_658 0.81 -2.0 763,332 + Pf6N2E2_658 0.81 -1.6 763,332 + Pf6N2E2_658 0.81 -1.8 763,332 + Pf6N2E2_658 0.81 -1.2 763,333 - Pf6N2E2_658 0.81 -1.1 763,333 - Pf6N2E2_658 0.81 -0.3 763,333 - Pf6N2E2_658 0.81 -1.7 763,333 - Pf6N2E2_658 0.81 -2.4 763,333 - Pf6N2E2_658 0.81 -1.7 763,333 - Pf6N2E2_658 0.81 -2.5 763,333 - Pf6N2E2_658 0.81 -0.4 763,333 - Pf6N2E2_658 0.81 -0.8 763,334 + Pf6N2E2_658 0.82 -1.7 763,334 + Pf6N2E2_658 0.82 -3.1 763,334 + Pf6N2E2_658 0.82 -2.7 763,334 + Pf6N2E2_658 0.82 -0.8 763,334 + Pf6N2E2_658 0.82 -1.2 763,334 + Pf6N2E2_658 0.82 +0.2 763,334 + Pf6N2E2_658 0.82 -2.1 763,334 + Pf6N2E2_658 0.82 -1.7 763,334 + Pf6N2E2_658 0.82 -0.6 763,335 - Pf6N2E2_658 0.82 -2.3 763,461 - -3.1 763,469 + -1.3 763,472 + -0.5 763,567 + -2.1 763,568 - -0.6 763,616 - +2.2 763,616 - +0.0 763,642 + -0.1 764,006 - Pf6N2E2_659 0.59 -2.1 764,006 - Pf6N2E2_659 0.59 +0.7 764,074 - Pf6N2E2_659 0.68 +1.7 764,246 - -0.1 764,286 + -1.0 764,287 - +0.7 764,287 - -0.7 764,349 + +0.7 764,384 + -0.1 764,385 - +0.7 764,385 - -2.4 764,385 - +0.9 764,385 - +0.3 764,394 + -0.5 764,395 - -1.4 764,510 + -0.8 764,511 - +1.2 764,554 + +0.0 764,555 - -1.6
Or see this region's nucleotide sequence