Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_658

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_656 and Pf6N2E2_657 are separated by 113 nucleotidesPf6N2E2_657 and Pf6N2E2_658 are separated by 199 nucleotidesPf6N2E2_658 and Pf6N2E2_659 overlap by 4 nucleotidesPf6N2E2_659 and Pf6N2E2_660 are separated by 223 nucleotides Pf6N2E2_656 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 759,262 to 761,835 _656 Pf6N2E2_657 - hypothetical protein, at 761,949 to 762,065 _657 Pf6N2E2_658 - sensor histidine kinase, at 762,265 to 763,575 _658 Pf6N2E2_659 - Transcriptional regulatory protein ompR, at 763,572 to 764,312 _659 Pf6N2E2_660 - hypothetical protein, at 764,536 to 764,799 _660 Position (kb) 762 763 764Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 761.300 kb on + strand, within Pf6N2E2_656at 761.301 kb on - strand, within Pf6N2E2_656at 761.448 kb on - strand, within Pf6N2E2_656at 761.448 kb on - strand, within Pf6N2E2_656at 761.490 kb on - strand, within Pf6N2E2_656at 761.495 kb on + strand, within Pf6N2E2_656at 761.496 kb on - strand, within Pf6N2E2_656at 761.504 kb on + strand, within Pf6N2E2_656at 761.534 kb on + strand, within Pf6N2E2_656at 761.835 kb on + strandat 761.841 kb on + strandat 761.841 kb on + strandat 761.881 kb on + strandat 761.881 kb on + strandat 761.881 kb on + strandat 761.881 kb on + strandat 761.881 kb on + strandat 761.882 kb on - strandat 761.903 kb on + strandat 761.903 kb on + strandat 761.904 kb on - strandat 761.907 kb on + strandat 761.908 kb on - strandat 762.151 kb on + strandat 762.151 kb on + strandat 762.152 kb on - strandat 762.737 kb on + strand, within Pf6N2E2_658at 762.997 kb on - strand, within Pf6N2E2_658at 763.144 kb on + strand, within Pf6N2E2_658at 763.145 kb on - strand, within Pf6N2E2_658at 763.145 kb on - strand, within Pf6N2E2_658at 763.235 kb on + strand, within Pf6N2E2_658at 763.328 kb on + strand, within Pf6N2E2_658at 763.328 kb on + strand, within Pf6N2E2_658at 763.328 kb on + strand, within Pf6N2E2_658at 763.328 kb on + strand, within Pf6N2E2_658at 763.328 kb on + strand, within Pf6N2E2_658at 763.328 kb on + strand, within Pf6N2E2_658at 763.329 kb on - strand, within Pf6N2E2_658at 763.329 kb on - strand, within Pf6N2E2_658at 763.329 kb on - strand, within Pf6N2E2_658at 763.329 kb on - strand, within Pf6N2E2_658at 763.329 kb on - strand, within Pf6N2E2_658at 763.329 kb on - strand, within Pf6N2E2_658at 763.332 kb on + strand, within Pf6N2E2_658at 763.332 kb on + strand, within Pf6N2E2_658at 763.332 kb on + strand, within Pf6N2E2_658at 763.332 kb on + strand, within Pf6N2E2_658at 763.332 kb on + strand, within Pf6N2E2_658at 763.332 kb on + strand, within Pf6N2E2_658at 763.332 kb on + strand, within Pf6N2E2_658at 763.333 kb on - strand, within Pf6N2E2_658at 763.333 kb on - strand, within Pf6N2E2_658at 763.333 kb on - strand, within Pf6N2E2_658at 763.333 kb on - strand, within Pf6N2E2_658at 763.333 kb on - strand, within Pf6N2E2_658at 763.333 kb on - strand, within Pf6N2E2_658at 763.333 kb on - strand, within Pf6N2E2_658at 763.333 kb on - strand, within Pf6N2E2_658at 763.334 kb on + strand, within Pf6N2E2_658at 763.334 kb on + strand, within Pf6N2E2_658at 763.334 kb on + strand, within Pf6N2E2_658at 763.334 kb on + strand, within Pf6N2E2_658at 763.334 kb on + strand, within Pf6N2E2_658at 763.334 kb on + strand, within Pf6N2E2_658at 763.334 kb on + strand, within Pf6N2E2_658at 763.334 kb on + strand, within Pf6N2E2_658at 763.334 kb on + strand, within Pf6N2E2_658at 763.335 kb on - strand, within Pf6N2E2_658at 763.461 kb on - strandat 763.469 kb on + strandat 763.472 kb on + strandat 763.567 kb on + strandat 763.568 kb on - strandat 763.616 kb on - strandat 763.616 kb on - strandat 763.642 kb on + strandat 764.006 kb on - strand, within Pf6N2E2_659at 764.006 kb on - strand, within Pf6N2E2_659at 764.074 kb on - strand, within Pf6N2E2_659at 764.246 kb on - strandat 764.286 kb on + strandat 764.287 kb on - strandat 764.287 kb on - strandat 764.349 kb on + strandat 764.384 kb on + strandat 764.385 kb on - strandat 764.385 kb on - strandat 764.385 kb on - strandat 764.385 kb on - strandat 764.394 kb on + strandat 764.395 kb on - strandat 764.510 kb on + strandat 764.511 kb on - strandat 764.554 kb on + strandat 764.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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761,300 + Pf6N2E2_656 0.79 +0.1
761,301 - Pf6N2E2_656 0.79 +0.9
761,448 - Pf6N2E2_656 0.85 -0.7
761,448 - Pf6N2E2_656 0.85 +0.6
761,490 - Pf6N2E2_656 0.87 +0.4
761,495 + Pf6N2E2_656 0.87 -0.3
761,496 - Pf6N2E2_656 0.87 +0.8
761,504 + Pf6N2E2_656 0.87 +0.3
761,534 + Pf6N2E2_656 0.88 +0.1
761,835 + -0.2
761,841 + +0.4
761,841 + +1.4
761,881 + +0.4
761,881 + -0.7
761,881 + -0.1
761,881 + +0.3
761,881 + -1.2
761,882 - +0.2
761,903 + -0.9
761,903 + +0.6
761,904 - +2.5
761,907 + -0.6
761,908 - +0.4
762,151 + -1.6
762,151 + +2.0
762,152 - -1.0
762,737 + Pf6N2E2_658 0.36 -1.6
762,997 - Pf6N2E2_658 0.56 -2.5
763,144 + Pf6N2E2_658 0.67 -0.1
763,145 - Pf6N2E2_658 0.67 -3.7
763,145 - Pf6N2E2_658 0.67 -1.1
763,235 + Pf6N2E2_658 0.74 -1.5
763,328 + Pf6N2E2_658 0.81 +0.3
763,328 + Pf6N2E2_658 0.81 -1.0
763,328 + Pf6N2E2_658 0.81 -1.9
763,328 + Pf6N2E2_658 0.81 -2.5
763,328 + Pf6N2E2_658 0.81 -1.3
763,328 + Pf6N2E2_658 0.81 -2.5
763,329 - Pf6N2E2_658 0.81 +0.2
763,329 - Pf6N2E2_658 0.81 -2.1
763,329 - Pf6N2E2_658 0.81 -2.8
763,329 - Pf6N2E2_658 0.81 -2.5
763,329 - Pf6N2E2_658 0.81 -1.7
763,329 - Pf6N2E2_658 0.81 -0.5
763,332 + Pf6N2E2_658 0.81 -0.2
763,332 + Pf6N2E2_658 0.81 -0.3
763,332 + Pf6N2E2_658 0.81 -2.1
763,332 + Pf6N2E2_658 0.81 -2.0
763,332 + Pf6N2E2_658 0.81 -1.6
763,332 + Pf6N2E2_658 0.81 -1.8
763,332 + Pf6N2E2_658 0.81 -1.2
763,333 - Pf6N2E2_658 0.81 -1.1
763,333 - Pf6N2E2_658 0.81 -0.3
763,333 - Pf6N2E2_658 0.81 -1.7
763,333 - Pf6N2E2_658 0.81 -2.4
763,333 - Pf6N2E2_658 0.81 -1.7
763,333 - Pf6N2E2_658 0.81 -2.5
763,333 - Pf6N2E2_658 0.81 -0.4
763,333 - Pf6N2E2_658 0.81 -0.8
763,334 + Pf6N2E2_658 0.82 -1.7
763,334 + Pf6N2E2_658 0.82 -3.1
763,334 + Pf6N2E2_658 0.82 -2.7
763,334 + Pf6N2E2_658 0.82 -0.8
763,334 + Pf6N2E2_658 0.82 -1.2
763,334 + Pf6N2E2_658 0.82 +0.2
763,334 + Pf6N2E2_658 0.82 -2.1
763,334 + Pf6N2E2_658 0.82 -1.7
763,334 + Pf6N2E2_658 0.82 -0.6
763,335 - Pf6N2E2_658 0.82 -2.3
763,461 - -3.1
763,469 + -1.3
763,472 + -0.5
763,567 + -2.1
763,568 - -0.6
763,616 - +2.2
763,616 - +0.0
763,642 + -0.1
764,006 - Pf6N2E2_659 0.59 -2.1
764,006 - Pf6N2E2_659 0.59 +0.7
764,074 - Pf6N2E2_659 0.68 +1.7
764,246 - -0.1
764,286 + -1.0
764,287 - +0.7
764,287 - -0.7
764,349 + +0.7
764,384 + -0.1
764,385 - +0.7
764,385 - -2.4
764,385 - +0.9
764,385 - +0.3
764,394 + -0.5
764,395 - -1.4
764,510 + -0.8
764,511 - +1.2
764,554 + +0.0
764,555 - -1.6

Or see this region's nucleotide sequence