Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_655 and Pf6N2E2_656 are separated by 150 nucleotides Pf6N2E2_656 and Pf6N2E2_657 are separated by 113 nucleotides Pf6N2E2_657 and Pf6N2E2_658 are separated by 199 nucleotides
Pf6N2E2_655 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 746,494 to 759,111
_655
Pf6N2E2_656 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 759,262 to 761,835
_656
Pf6N2E2_657 - hypothetical protein, at 761,949 to 762,065
_657
Pf6N2E2_658 - sensor histidine kinase, at 762,265 to 763,575
_658
Position (kb) 759
760
761
762 Strain fitness (log2 ratio) -1
0
1
2 at 758.422 kb on + strand at 758.422 kb on + strand at 758.422 kb on + strand at 758.423 kb on - strand at 758.423 kb on - strand at 758.430 kb on + strand at 758.487 kb on - strand at 758.487 kb on - strand at 758.487 kb on - strand at 758.487 kb on - strand at 758.546 kb on - strand at 758.567 kb on - strand at 759.010 kb on + strand at 759.011 kb on - strand at 759.109 kb on + strand at 759.110 kb on - strand at 759.169 kb on - strand at 759.169 kb on - strand at 759.219 kb on + strand at 759.220 kb on - strand at 759.326 kb on + strand at 759.327 kb on - strand at 759.416 kb on - strand at 759.704 kb on - strand, within Pf6N2E2_656 at 759.704 kb on - strand, within Pf6N2E2_656 at 759.817 kb on - strand, within Pf6N2E2_656 at 759.817 kb on - strand, within Pf6N2E2_656 at 759.959 kb on + strand, within Pf6N2E2_656 at 760.011 kb on - strand, within Pf6N2E2_656 at 760.052 kb on + strand, within Pf6N2E2_656 at 760.053 kb on - strand, within Pf6N2E2_656 at 760.053 kb on - strand, within Pf6N2E2_656 at 760.091 kb on + strand, within Pf6N2E2_656 at 760.092 kb on - strand, within Pf6N2E2_656 at 760.092 kb on - strand, within Pf6N2E2_656 at 760.178 kb on + strand, within Pf6N2E2_656 at 760.179 kb on - strand, within Pf6N2E2_656 at 760.179 kb on - strand, within Pf6N2E2_656 at 760.345 kb on - strand, within Pf6N2E2_656 at 760.638 kb on + strand, within Pf6N2E2_656 at 760.638 kb on + strand, within Pf6N2E2_656 at 760.664 kb on + strand, within Pf6N2E2_656 at 760.827 kb on - strand, within Pf6N2E2_656 at 760.827 kb on - strand, within Pf6N2E2_656 at 760.827 kb on - strand, within Pf6N2E2_656 at 760.827 kb on - strand, within Pf6N2E2_656 at 760.944 kb on - strand, within Pf6N2E2_656 at 761.300 kb on + strand, within Pf6N2E2_656 at 761.301 kb on - strand, within Pf6N2E2_656 at 761.448 kb on - strand, within Pf6N2E2_656 at 761.448 kb on - strand, within Pf6N2E2_656 at 761.490 kb on - strand, within Pf6N2E2_656 at 761.495 kb on + strand, within Pf6N2E2_656 at 761.496 kb on - strand, within Pf6N2E2_656 at 761.504 kb on + strand, within Pf6N2E2_656 at 761.534 kb on + strand, within Pf6N2E2_656 at 761.835 kb on + strand at 761.841 kb on + strand at 761.841 kb on + strand at 761.881 kb on + strand at 761.881 kb on + strand at 761.881 kb on + strand at 761.881 kb on + strand at 761.881 kb on + strand at 761.882 kb on - strand at 761.903 kb on + strand at 761.903 kb on + strand at 761.904 kb on - strand at 761.907 kb on + strand at 761.908 kb on - strand at 762.151 kb on + strand at 762.151 kb on + strand at 762.152 kb on - strand at 762.737 kb on + strand, within Pf6N2E2_658
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 758,422 + +0.7 758,422 + +1.2 758,422 + +1.0 758,423 - -0.7 758,423 - -1.3 758,430 + -0.2 758,487 - +0.1 758,487 - -0.1 758,487 - -0.8 758,487 - -0.2 758,546 - -0.2 758,567 - +0.7 759,010 + -0.5 759,011 - -0.1 759,109 + -1.0 759,110 - +0.2 759,169 - -0.9 759,169 - -0.5 759,219 + +1.0 759,220 - +2.6 759,326 + +0.4 759,327 - -1.1 759,416 - -0.8 759,704 - Pf6N2E2_656 0.17 -0.1 759,704 - Pf6N2E2_656 0.17 -0.1 759,817 - Pf6N2E2_656 0.22 +0.9 759,817 - Pf6N2E2_656 0.22 +0.2 759,959 + Pf6N2E2_656 0.27 -1.0 760,011 - Pf6N2E2_656 0.29 +0.9 760,052 + Pf6N2E2_656 0.31 +0.5 760,053 - Pf6N2E2_656 0.31 +0.6 760,053 - Pf6N2E2_656 0.31 +0.7 760,091 + Pf6N2E2_656 0.32 +0.2 760,092 - Pf6N2E2_656 0.32 +1.1 760,092 - Pf6N2E2_656 0.32 -0.8 760,178 + Pf6N2E2_656 0.36 +2.1 760,179 - Pf6N2E2_656 0.36 +0.2 760,179 - Pf6N2E2_656 0.36 -1.0 760,345 - Pf6N2E2_656 0.42 +0.6 760,638 + Pf6N2E2_656 0.53 +1.9 760,638 + Pf6N2E2_656 0.53 +1.9 760,664 + Pf6N2E2_656 0.54 +0.7 760,827 - Pf6N2E2_656 0.61 +2.0 760,827 - Pf6N2E2_656 0.61 +1.4 760,827 - Pf6N2E2_656 0.61 -1.6 760,827 - Pf6N2E2_656 0.61 -0.8 760,944 - Pf6N2E2_656 0.65 +1.1 761,300 + Pf6N2E2_656 0.79 +0.1 761,301 - Pf6N2E2_656 0.79 +0.9 761,448 - Pf6N2E2_656 0.85 -0.7 761,448 - Pf6N2E2_656 0.85 +0.6 761,490 - Pf6N2E2_656 0.87 +0.4 761,495 + Pf6N2E2_656 0.87 -0.3 761,496 - Pf6N2E2_656 0.87 +0.8 761,504 + Pf6N2E2_656 0.87 +0.3 761,534 + Pf6N2E2_656 0.88 +0.1 761,835 + -0.2 761,841 + +0.4 761,841 + +1.4 761,881 + +0.4 761,881 + -0.7 761,881 + -0.1 761,881 + +0.3 761,881 + -1.2 761,882 - +0.2 761,903 + -0.9 761,903 + +0.6 761,904 - +2.5 761,907 + -0.6 761,908 - +0.4 762,151 + -1.6 762,151 + +2.0 762,152 - -1.0 762,737 + Pf6N2E2_658 0.36 -1.6
Or see this region's nucleotide sequence