Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_625

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_623 and Pf6N2E2_624 overlap by 4 nucleotidesPf6N2E2_624 and Pf6N2E2_625 are separated by 9 nucleotidesPf6N2E2_625 and Pf6N2E2_626 are separated by 601 nucleotides Pf6N2E2_623 - FIG00954674: hypothetical protein, at 710,068 to 710,562 _623 Pf6N2E2_624 - hypothetical protein PA3071, at 710,559 to 711,503 _624 Pf6N2E2_625 - MoxR-like ATPase in aerotolerance operon, at 711,513 to 712,472 _625 Pf6N2E2_626 - hypothetical protein, at 713,074 to 713,442 _626 Position (kb) 711 712 713Strain fitness (log2 ratio) -3 -2 -1 0 1at 710.628 kb on - strandat 711.067 kb on + strand, within Pf6N2E2_624at 711.111 kb on - strand, within Pf6N2E2_624at 711.132 kb on + strand, within Pf6N2E2_624at 711.132 kb on + strand, within Pf6N2E2_624at 711.132 kb on + strand, within Pf6N2E2_624at 711.133 kb on - strand, within Pf6N2E2_624at 711.303 kb on + strand, within Pf6N2E2_624at 711.303 kb on + strand, within Pf6N2E2_624at 711.303 kb on + strand, within Pf6N2E2_624at 711.303 kb on + strand, within Pf6N2E2_624at 711.304 kb on - strand, within Pf6N2E2_624at 711.304 kb on - strand, within Pf6N2E2_624at 711.497 kb on + strandat 711.498 kb on - strandat 711.635 kb on + strand, within Pf6N2E2_625at 711.727 kb on + strand, within Pf6N2E2_625at 711.799 kb on + strand, within Pf6N2E2_625at 711.823 kb on + strand, within Pf6N2E2_625at 711.823 kb on + strand, within Pf6N2E2_625at 711.823 kb on + strand, within Pf6N2E2_625at 711.823 kb on + strand, within Pf6N2E2_625at 711.824 kb on - strand, within Pf6N2E2_625at 712.072 kb on + strand, within Pf6N2E2_625at 712.073 kb on - strand, within Pf6N2E2_625at 712.073 kb on - strand, within Pf6N2E2_625at 712.073 kb on - strand, within Pf6N2E2_625at 712.073 kb on - strand, within Pf6N2E2_625at 712.073 kb on - strand, within Pf6N2E2_625at 712.534 kb on + strandat 712.534 kb on + strandat 712.540 kb on - strandat 712.641 kb on + strandat 712.738 kb on + strandat 712.739 kb on - strandat 712.739 kb on - strandat 712.748 kb on + strandat 712.748 kb on + strandat 712.749 kb on - strandat 712.749 kb on - strandat 712.749 kb on - strandat 712.791 kb on + strandat 712.792 kb on - strandat 712.797 kb on + strandat 712.797 kb on + strandat 712.798 kb on - strandat 712.839 kb on + strandat 712.839 kb on + strandat 713.440 kb on + strandat 713.440 kb on + strandat 713.440 kb on + strandat 713.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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710,628 - -1.9
711,067 + Pf6N2E2_624 0.54 -3.2
711,111 - Pf6N2E2_624 0.58 -1.1
711,132 + Pf6N2E2_624 0.61 -1.5
711,132 + Pf6N2E2_624 0.61 -0.8
711,132 + Pf6N2E2_624 0.61 -1.0
711,133 - Pf6N2E2_624 0.61 -2.8
711,303 + Pf6N2E2_624 0.79 -2.5
711,303 + Pf6N2E2_624 0.79 -2.5
711,303 + Pf6N2E2_624 0.79 -3.7
711,303 + Pf6N2E2_624 0.79 -2.3
711,304 - Pf6N2E2_624 0.79 -2.3
711,304 - Pf6N2E2_624 0.79 -3.1
711,497 + -0.1
711,498 - -2.8
711,635 + Pf6N2E2_625 0.13 -1.3
711,727 + Pf6N2E2_625 0.22 -0.8
711,799 + Pf6N2E2_625 0.30 -2.0
711,823 + Pf6N2E2_625 0.32 -0.4
711,823 + Pf6N2E2_625 0.32 -0.2
711,823 + Pf6N2E2_625 0.32 -0.8
711,823 + Pf6N2E2_625 0.32 -0.4
711,824 - Pf6N2E2_625 0.32 +0.2
712,072 + Pf6N2E2_625 0.58 -2.1
712,073 - Pf6N2E2_625 0.58 -1.2
712,073 - Pf6N2E2_625 0.58 -0.5
712,073 - Pf6N2E2_625 0.58 -1.0
712,073 - Pf6N2E2_625 0.58 -1.3
712,073 - Pf6N2E2_625 0.58 -0.7
712,534 + -1.0
712,534 + -0.5
712,540 - +0.9
712,641 + -0.8
712,738 + -0.5
712,739 - +0.3
712,739 - +0.1
712,748 + +0.6
712,748 + +0.4
712,749 - +0.1
712,749 - +0.5
712,749 - +1.0
712,791 + -1.4
712,792 - +1.2
712,797 + -1.7
712,797 + +0.8
712,798 - -1.5
712,839 + -0.4
712,839 + -0.1
713,440 + -0.1
713,440 + -0.2
713,440 + +1.4
713,441 - +0.1

Or see this region's nucleotide sequence