Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_622 and Pf6N2E2_623 overlap by 8 nucleotides Pf6N2E2_623 and Pf6N2E2_624 overlap by 4 nucleotides Pf6N2E2_624 and Pf6N2E2_625 are separated by 9 nucleotides
Pf6N2E2_622 - BatA (Bacteroides aerotolerance operon), at 708,996 to 710,075
_622
Pf6N2E2_623 - FIG00954674: hypothetical protein, at 710,068 to 710,562
_623
Pf6N2E2_624 - hypothetical protein PA3071, at 710,559 to 711,503
_624
Pf6N2E2_625 - MoxR-like ATPase in aerotolerance operon, at 711,513 to 712,472
_625
Position (kb) 710
711
712 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 709.639 kb on + strand, within Pf6N2E2_622 at 709.639 kb on + strand, within Pf6N2E2_622 at 709.640 kb on - strand, within Pf6N2E2_622 at 710.168 kb on - strand, within Pf6N2E2_623 at 710.628 kb on - strand at 711.067 kb on + strand, within Pf6N2E2_624 at 711.111 kb on - strand, within Pf6N2E2_624 at 711.132 kb on + strand, within Pf6N2E2_624 at 711.132 kb on + strand, within Pf6N2E2_624 at 711.132 kb on + strand, within Pf6N2E2_624 at 711.133 kb on - strand, within Pf6N2E2_624 at 711.303 kb on + strand, within Pf6N2E2_624 at 711.303 kb on + strand, within Pf6N2E2_624 at 711.303 kb on + strand, within Pf6N2E2_624 at 711.303 kb on + strand, within Pf6N2E2_624 at 711.304 kb on - strand, within Pf6N2E2_624 at 711.304 kb on - strand, within Pf6N2E2_624 at 711.497 kb on + strand at 711.498 kb on - strand at 711.635 kb on + strand, within Pf6N2E2_625 at 711.727 kb on + strand, within Pf6N2E2_625 at 711.799 kb on + strand, within Pf6N2E2_625 at 711.823 kb on + strand, within Pf6N2E2_625 at 711.823 kb on + strand, within Pf6N2E2_625 at 711.823 kb on + strand, within Pf6N2E2_625 at 711.823 kb on + strand, within Pf6N2E2_625 at 711.824 kb on - strand, within Pf6N2E2_625 at 712.072 kb on + strand, within Pf6N2E2_625 at 712.073 kb on - strand, within Pf6N2E2_625 at 712.073 kb on - strand, within Pf6N2E2_625 at 712.073 kb on - strand, within Pf6N2E2_625 at 712.073 kb on - strand, within Pf6N2E2_625 at 712.073 kb on - strand, within Pf6N2E2_625
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 709,639 + Pf6N2E2_622 0.60 -1.8 709,639 + Pf6N2E2_622 0.60 -2.5 709,640 - Pf6N2E2_622 0.60 -0.2 710,168 - Pf6N2E2_623 0.20 -0.2 710,628 - -1.9 711,067 + Pf6N2E2_624 0.54 -3.2 711,111 - Pf6N2E2_624 0.58 -1.1 711,132 + Pf6N2E2_624 0.61 -1.5 711,132 + Pf6N2E2_624 0.61 -0.8 711,132 + Pf6N2E2_624 0.61 -1.0 711,133 - Pf6N2E2_624 0.61 -2.8 711,303 + Pf6N2E2_624 0.79 -2.5 711,303 + Pf6N2E2_624 0.79 -2.5 711,303 + Pf6N2E2_624 0.79 -3.7 711,303 + Pf6N2E2_624 0.79 -2.3 711,304 - Pf6N2E2_624 0.79 -2.3 711,304 - Pf6N2E2_624 0.79 -3.1 711,497 + -0.1 711,498 - -2.8 711,635 + Pf6N2E2_625 0.13 -1.3 711,727 + Pf6N2E2_625 0.22 -0.8 711,799 + Pf6N2E2_625 0.30 -2.0 711,823 + Pf6N2E2_625 0.32 -0.4 711,823 + Pf6N2E2_625 0.32 -0.2 711,823 + Pf6N2E2_625 0.32 -0.8 711,823 + Pf6N2E2_625 0.32 -0.4 711,824 - Pf6N2E2_625 0.32 +0.2 712,072 + Pf6N2E2_625 0.58 -2.1 712,073 - Pf6N2E2_625 0.58 -1.2 712,073 - Pf6N2E2_625 0.58 -0.5 712,073 - Pf6N2E2_625 0.58 -1.0 712,073 - Pf6N2E2_625 0.58 -1.3 712,073 - Pf6N2E2_625 0.58 -0.7
Or see this region's nucleotide sequence