Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_621

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_620 and Pf6N2E2_621 overlap by 4 nucleotidesPf6N2E2_621 and Pf6N2E2_622 overlap by 4 nucleotides Pf6N2E2_620 - BatD, at 705,629 to 707,266 _620 Pf6N2E2_621 - TPR domain protein in aerotolerance operon, at 707,263 to 708,999 _621 Pf6N2E2_622 - BatA (Bacteroides aerotolerance operon), at 708,996 to 710,075 _622 Position (kb) 707 708 709Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 706.488 kb on + strand, within Pf6N2E2_620at 706.653 kb on + strand, within Pf6N2E2_620at 706.653 kb on + strand, within Pf6N2E2_620at 706.654 kb on - strand, within Pf6N2E2_620at 706.654 kb on - strand, within Pf6N2E2_620at 706.710 kb on + strand, within Pf6N2E2_620at 706.782 kb on + strand, within Pf6N2E2_620at 706.836 kb on + strand, within Pf6N2E2_620at 706.836 kb on + strand, within Pf6N2E2_620at 706.836 kb on + strand, within Pf6N2E2_620at 706.836 kb on + strand, within Pf6N2E2_620at 706.836 kb on + strand, within Pf6N2E2_620at 706.836 kb on + strand, within Pf6N2E2_620at 706.836 kb on + strand, within Pf6N2E2_620at 706.836 kb on + strand, within Pf6N2E2_620at 706.836 kb on + strand, within Pf6N2E2_620at 706.836 kb on + strand, within Pf6N2E2_620at 706.837 kb on - strand, within Pf6N2E2_620at 706.837 kb on - strand, within Pf6N2E2_620at 706.837 kb on - strand, within Pf6N2E2_620at 706.837 kb on - strand, within Pf6N2E2_620at 707.247 kb on + strandat 707.247 kb on + strandat 707.248 kb on - strandat 707.248 kb on - strandat 707.313 kb on + strandat 707.458 kb on + strand, within Pf6N2E2_621at 707.458 kb on + strand, within Pf6N2E2_621at 707.458 kb on + strand, within Pf6N2E2_621at 707.459 kb on - strand, within Pf6N2E2_621at 707.723 kb on + strand, within Pf6N2E2_621at 707.723 kb on + strand, within Pf6N2E2_621at 707.723 kb on + strand, within Pf6N2E2_621at 707.723 kb on + strand, within Pf6N2E2_621at 707.780 kb on + strand, within Pf6N2E2_621at 707.780 kb on + strand, within Pf6N2E2_621at 707.781 kb on - strand, within Pf6N2E2_621at 707.995 kb on + strand, within Pf6N2E2_621at 707.995 kb on + strand, within Pf6N2E2_621at 707.996 kb on - strand, within Pf6N2E2_621at 708.275 kb on + strand, within Pf6N2E2_621at 708.567 kb on + strand, within Pf6N2E2_621at 708.634 kb on + strand, within Pf6N2E2_621at 708.634 kb on + strand, within Pf6N2E2_621at 708.635 kb on - strand, within Pf6N2E2_621at 708.861 kb on + strandat 708.862 kb on - strandat 708.862 kb on - strandat 708.950 kb on - strandat 708.950 kb on - strandat 708.958 kb on + strandat 708.959 kb on - strandat 709.165 kb on + strand, within Pf6N2E2_622at 709.166 kb on - strand, within Pf6N2E2_622at 709.245 kb on + strand, within Pf6N2E2_622at 709.639 kb on + strand, within Pf6N2E2_622at 709.639 kb on + strand, within Pf6N2E2_622at 709.640 kb on - strand, within Pf6N2E2_622

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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706,488 + Pf6N2E2_620 0.52 -1.0
706,653 + Pf6N2E2_620 0.63 +0.5
706,653 + Pf6N2E2_620 0.63 -2.7
706,654 - Pf6N2E2_620 0.63 -2.8
706,654 - Pf6N2E2_620 0.63 -1.3
706,710 + Pf6N2E2_620 0.66 -2.9
706,782 + Pf6N2E2_620 0.70 -0.7
706,836 + Pf6N2E2_620 0.74 -2.1
706,836 + Pf6N2E2_620 0.74 -1.2
706,836 + Pf6N2E2_620 0.74 -2.4
706,836 + Pf6N2E2_620 0.74 -1.4
706,836 + Pf6N2E2_620 0.74 -0.4
706,836 + Pf6N2E2_620 0.74 +0.0
706,836 + Pf6N2E2_620 0.74 -2.2
706,836 + Pf6N2E2_620 0.74 -1.3
706,836 + Pf6N2E2_620 0.74 -2.6
706,836 + Pf6N2E2_620 0.74 -3.2
706,837 - Pf6N2E2_620 0.74 +1.8
706,837 - Pf6N2E2_620 0.74 +0.8
706,837 - Pf6N2E2_620 0.74 -1.2
706,837 - Pf6N2E2_620 0.74 -3.1
707,247 + +1.9
707,247 + -3.0
707,248 - -3.4
707,248 - +0.3
707,313 + -2.3
707,458 + Pf6N2E2_621 0.11 -0.1
707,458 + Pf6N2E2_621 0.11 -2.0
707,458 + Pf6N2E2_621 0.11 -2.0
707,459 - Pf6N2E2_621 0.11 -1.6
707,723 + Pf6N2E2_621 0.26 -2.5
707,723 + Pf6N2E2_621 0.26 -1.1
707,723 + Pf6N2E2_621 0.26 -1.2
707,723 + Pf6N2E2_621 0.26 -1.3
707,780 + Pf6N2E2_621 0.30 -2.7
707,780 + Pf6N2E2_621 0.30 -1.7
707,781 - Pf6N2E2_621 0.30 -1.5
707,995 + Pf6N2E2_621 0.42 -0.8
707,995 + Pf6N2E2_621 0.42 -1.8
707,996 - Pf6N2E2_621 0.42 -2.2
708,275 + Pf6N2E2_621 0.58 -1.7
708,567 + Pf6N2E2_621 0.75 -0.7
708,634 + Pf6N2E2_621 0.79 -1.2
708,634 + Pf6N2E2_621 0.79 -2.1
708,635 - Pf6N2E2_621 0.79 -0.8
708,861 + +0.2
708,862 - -1.4
708,862 - -0.8
708,950 - -1.2
708,950 - -1.4
708,958 + -2.3
708,959 - -0.5
709,165 + Pf6N2E2_622 0.16 -2.0
709,166 - Pf6N2E2_622 0.16 -0.8
709,245 + Pf6N2E2_622 0.23 -2.0
709,639 + Pf6N2E2_622 0.60 -1.8
709,639 + Pf6N2E2_622 0.60 -2.5
709,640 - Pf6N2E2_622 0.60 -0.2

Or see this region's nucleotide sequence