Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6140

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6137 and Pf6N2E2_6138 are separated by 80 nucleotidesPf6N2E2_6138 and Pf6N2E2_6139 are separated by 33 nucleotidesPf6N2E2_6139 and Pf6N2E2_6140 are separated by 247 nucleotidesPf6N2E2_6140 and Pf6N2E2_6141 are separated by 166 nucleotidesPf6N2E2_6141 and Pf6N2E2_4841 are separated by 44 nucleotides Pf6N2E2_6137 - Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA, at 5,594,492 to 5,596,019 _6137 Pf6N2E2_6138 - tRNA-Ile-GAT, at 5,596,100 to 5,596,173 _6138 Pf6N2E2_6139 - tRNA-Ala-TGC, at 5,596,207 to 5,596,279 _6139 Pf6N2E2_6140 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 5,596,527 to 5,599,419 _6140 Pf6N2E2_6141 - 5S RNA, at 5,599,586 to 5,599,705 _6141 Pf6N2E2_4841 - Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15), at 5,599,750 to 5,600,793 _4841 Position (kb) 5596 5597 5598 5599 5600Strain fitness (log2 ratio) -2 -1 0 1at 5596.034 kb on + strandat 5596.920 kb on + strand, within Pf6N2E2_6140at 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.418 kb on + strandat 5599.438 kb on + strandat 5599.438 kb on + strandat 5599.438 kb on + strandat 5599.737 kb on + strandat 5599.737 kb on + strandat 5599.779 kb on + strandat 5599.779 kb on + strandat 5599.780 kb on - strandat 5599.780 kb on - strandat 5599.780 kb on - strandat 5599.850 kb on + strandat 5599.850 kb on + strandat 5599.917 kb on + strand, within Pf6N2E2_4841at 5599.917 kb on + strand, within Pf6N2E2_4841at 5599.917 kb on + strand, within Pf6N2E2_4841at 5599.917 kb on + strand, within Pf6N2E2_4841at 5599.958 kb on + strand, within Pf6N2E2_4841at 5599.958 kb on + strand, within Pf6N2E2_4841at 5599.958 kb on + strand, within Pf6N2E2_4841at 5599.958 kb on + strand, within Pf6N2E2_4841at 5599.958 kb on + strand, within Pf6N2E2_4841at 5599.974 kb on + strand, within Pf6N2E2_4841at 5599.986 kb on + strand, within Pf6N2E2_4841at 5599.993 kb on + strand, within Pf6N2E2_4841at 5600.004 kb on + strand, within Pf6N2E2_4841

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,596,034 + +1.2
5,596,920 + Pf6N2E2_6140 0.14 -0.9
5,599,418 + -0.8
5,599,418 + -0.3
5,599,418 + +0.2
5,599,418 + -1.8
5,599,418 + -1.4
5,599,418 + -1.0
5,599,418 + -0.1
5,599,438 + -1.4
5,599,438 + -0.1
5,599,438 + -1.2
5,599,737 + +1.7
5,599,737 + +0.5
5,599,779 + +1.3
5,599,779 + +1.1
5,599,780 - -1.5
5,599,780 - -1.5
5,599,780 - +1.0
5,599,850 + +0.5
5,599,850 + +0.7
5,599,917 + Pf6N2E2_4841 0.16 +0.6
5,599,917 + Pf6N2E2_4841 0.16 +0.1
5,599,917 + Pf6N2E2_4841 0.16 +0.5
5,599,917 + Pf6N2E2_4841 0.16 -0.8
5,599,958 + Pf6N2E2_4841 0.20 +0.6
5,599,958 + Pf6N2E2_4841 0.20 -0.1
5,599,958 + Pf6N2E2_4841 0.20 -1.0
5,599,958 + Pf6N2E2_4841 0.20 -0.6
5,599,958 + Pf6N2E2_4841 0.20 +1.4
5,599,974 + Pf6N2E2_4841 0.21 -0.4
5,599,986 + Pf6N2E2_4841 0.23 -0.2
5,599,993 + Pf6N2E2_4841 0.23 -0.0
5,600,004 + Pf6N2E2_4841 0.24 -2.4

Or see this region's nucleotide sequence