Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6137 and Pf6N2E2_6138 are separated by 80 nucleotides Pf6N2E2_6138 and Pf6N2E2_6139 are separated by 33 nucleotides Pf6N2E2_6139 and Pf6N2E2_6140 are separated by 247 nucleotides Pf6N2E2_6140 and Pf6N2E2_6141 are separated by 166 nucleotides Pf6N2E2_6141 and Pf6N2E2_4841 are separated by 44 nucleotides
Pf6N2E2_6137 - Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA, at 5,594,492 to 5,596,019
_6137
Pf6N2E2_6138 - tRNA-Ile-GAT, at 5,596,100 to 5,596,173
_6138
Pf6N2E2_6139 - tRNA-Ala-TGC, at 5,596,207 to 5,596,279
_6139
Pf6N2E2_6140 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 5,596,527 to 5,599,419
_6140
Pf6N2E2_6141 - 5S RNA, at 5,599,586 to 5,599,705
_6141
Pf6N2E2_4841 - Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15), at 5,599,750 to 5,600,793
_4841
Position (kb)
5596
5597
5598
5599
5600 Strain fitness (log2 ratio)
-2
-1
0
1 at 5596.034 kb on + strand at 5596.920 kb on + strand, within Pf6N2E2_6140 at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.438 kb on + strand at 5599.438 kb on + strand at 5599.438 kb on + strand at 5599.737 kb on + strand at 5599.737 kb on + strand at 5599.779 kb on + strand at 5599.779 kb on + strand at 5599.780 kb on - strand at 5599.780 kb on - strand at 5599.780 kb on - strand at 5599.850 kb on + strand at 5599.850 kb on + strand at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.974 kb on + strand, within Pf6N2E2_4841 at 5599.986 kb on + strand, within Pf6N2E2_4841 at 5599.993 kb on + strand, within Pf6N2E2_4841 at 5600.004 kb on + strand, within Pf6N2E2_4841
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,596,034 + +1.2 5,596,920 + Pf6N2E2_6140 0.14 -0.9 5,599,418 + -0.8 5,599,418 + -0.3 5,599,418 + +0.2 5,599,418 + -1.8 5,599,418 + -1.4 5,599,418 + -1.0 5,599,418 + -0.1 5,599,438 + -1.4 5,599,438 + -0.1 5,599,438 + -1.2 5,599,737 + +1.7 5,599,737 + +0.5 5,599,779 + +1.3 5,599,779 + +1.1 5,599,780 - -1.5 5,599,780 - -1.5 5,599,780 - +1.0 5,599,850 + +0.5 5,599,850 + +0.7 5,599,917 + Pf6N2E2_4841 0.16 +0.6 5,599,917 + Pf6N2E2_4841 0.16 +0.1 5,599,917 + Pf6N2E2_4841 0.16 +0.5 5,599,917 + Pf6N2E2_4841 0.16 -0.8 5,599,958 + Pf6N2E2_4841 0.20 +0.6 5,599,958 + Pf6N2E2_4841 0.20 -0.1 5,599,958 + Pf6N2E2_4841 0.20 -1.0 5,599,958 + Pf6N2E2_4841 0.20 -0.6 5,599,958 + Pf6N2E2_4841 0.20 +1.4 5,599,974 + Pf6N2E2_4841 0.21 -0.4 5,599,986 + Pf6N2E2_4841 0.23 -0.2 5,599,993 + Pf6N2E2_4841 0.23 -0.0 5,600,004 + Pf6N2E2_4841 0.24 -2.4
Or see this region's nucleotide sequence