Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5943

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5942 and Pf6N2E2_5943 overlap by 21 nucleotidesPf6N2E2_5943 and Pf6N2E2_5944 are separated by 312 nucleotides Pf6N2E2_5942 - Ribonuclease E (EC 3.1.26.12), at 6,761,732 to 6,764,929 _5942 Pf6N2E2_5943 - hypothetical protein, at 6,764,909 to 6,765,313 _5943 Pf6N2E2_5944 - Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70), at 6,765,626 to 6,766,594 _5944 Position (kb) 6764 6765 6766Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6765.269 kb on - strand, within Pf6N2E2_5943at 6765.269 kb on - strand, within Pf6N2E2_5943at 6765.269 kb on - strand, within Pf6N2E2_5943at 6765.307 kb on - strandat 6765.307 kb on - strandat 6765.307 kb on - strandat 6765.307 kb on - strandat 6765.421 kb on - strandat 6765.598 kb on - strandat 6765.625 kb on + strandat 6765.646 kb on + strandat 6765.646 kb on + strandat 6765.646 kb on + strandat 6765.646 kb on + strandat 6765.647 kb on - strandat 6765.716 kb on - strandat 6765.818 kb on + strand, within Pf6N2E2_5944at 6765.928 kb on + strand, within Pf6N2E2_5944at 6765.928 kb on + strand, within Pf6N2E2_5944at 6765.928 kb on + strand, within Pf6N2E2_5944at 6765.932 kb on + strand, within Pf6N2E2_5944at 6765.932 kb on + strand, within Pf6N2E2_5944at 6765.932 kb on + strand, within Pf6N2E2_5944at 6765.973 kb on + strand, within Pf6N2E2_5944at 6766.170 kb on - strand, within Pf6N2E2_5944

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
6,765,269 - Pf6N2E2_5943 0.89 -3.2
6,765,269 - Pf6N2E2_5943 0.89 -1.0
6,765,269 - Pf6N2E2_5943 0.89 +0.8
6,765,307 - -0.2
6,765,307 - +0.7
6,765,307 - -2.0
6,765,307 - -0.8
6,765,421 - +0.0
6,765,598 - +0.0
6,765,625 + +1.8
6,765,646 + +2.0
6,765,646 + +1.7
6,765,646 + +2.5
6,765,646 + +2.1
6,765,647 - -0.4
6,765,716 - -0.3
6,765,818 + Pf6N2E2_5944 0.20 +2.9
6,765,928 + Pf6N2E2_5944 0.31 -0.1
6,765,928 + Pf6N2E2_5944 0.31 +1.4
6,765,928 + Pf6N2E2_5944 0.31 +0.7
6,765,932 + Pf6N2E2_5944 0.32 +1.0
6,765,932 + Pf6N2E2_5944 0.32 +0.4
6,765,932 + Pf6N2E2_5944 0.32 +1.0
6,765,973 + Pf6N2E2_5944 0.36 +0.4
6,766,170 - Pf6N2E2_5944 0.56 +0.4

Or see this region's nucleotide sequence