Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5771

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5770 and Pf6N2E2_5771 are separated by 269 nucleotidesPf6N2E2_5771 and Pf6N2E2_5772 are separated by 294 nucleotidesPf6N2E2_5772 and Pf6N2E2_5773 are separated by 90 nucleotides Pf6N2E2_5770 - FIG00959155: hypothetical protein, at 6,586,109 to 6,587,914 _5770 Pf6N2E2_5771 - FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8), at 6,588,184 to 6,588,897 _5771 Pf6N2E2_5772 - DUF1232 domain-containing protein, at 6,589,192 to 6,589,647 _5772 Pf6N2E2_5773 - Transcriptional regulator, Cro/CI family, at 6,589,738 to 6,590,103 _5773 Position (kb) 6588 6589Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6587.319 kb on + strand, within Pf6N2E2_5770at 6587.320 kb on - strand, within Pf6N2E2_5770at 6587.320 kb on - strand, within Pf6N2E2_5770at 6587.320 kb on - strand, within Pf6N2E2_5770at 6587.370 kb on + strand, within Pf6N2E2_5770at 6587.370 kb on + strand, within Pf6N2E2_5770at 6587.370 kb on + strand, within Pf6N2E2_5770at 6587.370 kb on + strand, within Pf6N2E2_5770at 6587.371 kb on - strand, within Pf6N2E2_5770at 6587.371 kb on - strand, within Pf6N2E2_5770at 6587.371 kb on - strand, within Pf6N2E2_5770at 6587.371 kb on - strand, within Pf6N2E2_5770at 6587.371 kb on - strand, within Pf6N2E2_5770at 6587.371 kb on - strand, within Pf6N2E2_5770at 6587.373 kb on + strand, within Pf6N2E2_5770at 6587.373 kb on + strand, within Pf6N2E2_5770at 6587.374 kb on - strand, within Pf6N2E2_5770at 6587.374 kb on - strand, within Pf6N2E2_5770at 6587.374 kb on - strand, within Pf6N2E2_5770at 6587.374 kb on - strand, within Pf6N2E2_5770at 6587.377 kb on + strand, within Pf6N2E2_5770at 6587.378 kb on - strand, within Pf6N2E2_5770at 6587.378 kb on - strand, within Pf6N2E2_5770at 6587.428 kb on + strand, within Pf6N2E2_5770at 6587.428 kb on + strand, within Pf6N2E2_5770at 6587.428 kb on + strand, within Pf6N2E2_5770at 6587.428 kb on + strand, within Pf6N2E2_5770at 6587.428 kb on + strand, within Pf6N2E2_5770at 6587.428 kb on + strand, within Pf6N2E2_5770at 6587.429 kb on - strand, within Pf6N2E2_5770at 6587.429 kb on - strand, within Pf6N2E2_5770at 6587.429 kb on - strand, within Pf6N2E2_5770at 6587.429 kb on - strand, within Pf6N2E2_5770at 6587.429 kb on - strand, within Pf6N2E2_5770at 6587.653 kb on - strand, within Pf6N2E2_5770at 6587.653 kb on - strand, within Pf6N2E2_5770at 6587.751 kb on + strandat 6587.751 kb on + strandat 6587.751 kb on + strandat 6587.751 kb on + strandat 6587.751 kb on + strandat 6587.752 kb on - strandat 6587.752 kb on - strandat 6587.752 kb on - strandat 6587.752 kb on - strandat 6587.752 kb on - strandat 6587.754 kb on + strandat 6587.754 kb on + strandat 6587.754 kb on + strandat 6587.754 kb on + strandat 6587.755 kb on - strandat 6587.755 kb on - strandat 6587.755 kb on - strandat 6587.755 kb on - strandat 6587.755 kb on - strandat 6587.791 kb on - strandat 6587.791 kb on - strandat 6587.815 kb on - strandat 6587.841 kb on + strandat 6587.841 kb on + strandat 6587.841 kb on + strandat 6587.842 kb on - strandat 6587.842 kb on - strandat 6587.842 kb on - strandat 6587.844 kb on + strandat 6587.844 kb on + strandat 6587.844 kb on + strandat 6587.845 kb on - strandat 6587.845 kb on - strandat 6587.945 kb on + strandat 6587.945 kb on + strandat 6588.017 kb on + strandat 6588.018 kb on - strandat 6588.018 kb on - strandat 6588.021 kb on + strandat 6588.022 kb on - strandat 6588.079 kb on + strandat 6588.079 kb on + strandat 6588.079 kb on + strandat 6588.079 kb on + strandat 6588.079 kb on + strandat 6588.079 kb on + strandat 6588.080 kb on - strandat 6588.131 kb on + strandat 6588.132 kb on - strandat 6588.180 kb on + strandat 6588.180 kb on + strandat 6588.180 kb on + strandat 6588.181 kb on - strandat 6588.181 kb on - strandat 6588.230 kb on + strandat 6588.231 kb on - strandat 6588.261 kb on - strand, within Pf6N2E2_5771at 6588.540 kb on + strand, within Pf6N2E2_5771at 6588.565 kb on + strand, within Pf6N2E2_5771at 6588.614 kb on + strand, within Pf6N2E2_5771at 6588.614 kb on + strand, within Pf6N2E2_5771at 6588.628 kb on + strand, within Pf6N2E2_5771at 6588.628 kb on + strandat 6588.629 kb on - strand, within Pf6N2E2_5771at 6588.760 kb on + strand, within Pf6N2E2_5771at 6588.760 kb on + strand, within Pf6N2E2_5771at 6588.760 kb on + strand, within Pf6N2E2_5771at 6588.760 kb on + strand, within Pf6N2E2_5771at 6588.760 kb on + strand, within Pf6N2E2_5771at 6588.760 kb on + strand, within Pf6N2E2_5771at 6588.761 kb on - strand, within Pf6N2E2_5771at 6588.761 kb on - strand, within Pf6N2E2_5771at 6588.769 kb on + strand, within Pf6N2E2_5771at 6588.769 kb on + strand, within Pf6N2E2_5771at 6588.769 kb on + strand, within Pf6N2E2_5771at 6588.769 kb on + strand, within Pf6N2E2_5771at 6588.769 kb on + strand, within Pf6N2E2_5771at 6588.769 kb on + strand, within Pf6N2E2_5771at 6588.895 kb on + strandat 6588.895 kb on + strandat 6588.896 kb on - strandat 6588.896 kb on - strandat 6588.896 kb on - strandat 6588.908 kb on + strandat 6588.908 kb on + strandat 6588.908 kb on + strandat 6588.909 kb on - strandat 6588.909 kb on - strandat 6588.909 kb on - strandat 6588.909 kb on - strandat 6588.909 kb on - strandat 6588.995 kb on - strandat 6588.995 kb on - strandat 6588.995 kb on - strandat 6588.995 kb on - strandat 6588.995 kb on - strandat 6588.996 kb on + strandat 6588.996 kb on + strandat 6588.996 kb on + strandat 6588.996 kb on + strandat 6588.996 kb on + strandat 6588.997 kb on - strandat 6588.997 kb on - strandat 6588.997 kb on - strandat 6588.997 kb on - strandat 6589.003 kb on - strandat 6589.003 kb on - strandat 6589.003 kb on - strandat 6589.003 kb on - strandat 6589.003 kb on - strandat 6589.009 kb on + strandat 6589.010 kb on - strandat 6589.023 kb on + strandat 6589.054 kb on + strandat 6589.067 kb on + strandat 6589.104 kb on + strandat 6589.151 kb on + strandat 6589.363 kb on + strand, within Pf6N2E2_5772at 6589.429 kb on + strand, within Pf6N2E2_5772at 6589.429 kb on + strand, within Pf6N2E2_5772at 6589.429 kb on + strand, within Pf6N2E2_5772at 6589.430 kb on - strand, within Pf6N2E2_5772at 6589.430 kb on - strand, within Pf6N2E2_5772at 6589.461 kb on + strand, within Pf6N2E2_5772at 6589.461 kb on + strand, within Pf6N2E2_5772at 6589.462 kb on - strand, within Pf6N2E2_5772at 6589.700 kb on + strandat 6589.700 kb on - strandat 6589.701 kb on - strandat 6589.701 kb on - strandat 6589.706 kb on + strandat 6589.714 kb on + strandat 6589.715 kb on - strandat 6589.735 kb on + strandat 6589.757 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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6,587,319 + Pf6N2E2_5770 0.67 -0.4
6,587,320 - Pf6N2E2_5770 0.67 +1.2
6,587,320 - Pf6N2E2_5770 0.67 -0.8
6,587,320 - Pf6N2E2_5770 0.67 +0.7
6,587,370 + Pf6N2E2_5770 0.70 +0.4
6,587,370 + Pf6N2E2_5770 0.70 -0.8
6,587,370 + Pf6N2E2_5770 0.70 +0.4
6,587,370 + Pf6N2E2_5770 0.70 -2.6
6,587,371 - Pf6N2E2_5770 0.70 +0.0
6,587,371 - Pf6N2E2_5770 0.70 +0.2
6,587,371 - Pf6N2E2_5770 0.70 +0.0
6,587,371 - Pf6N2E2_5770 0.70 +0.3
6,587,371 - Pf6N2E2_5770 0.70 +0.6
6,587,371 - Pf6N2E2_5770 0.70 +0.6
6,587,373 + Pf6N2E2_5770 0.70 -0.6
6,587,373 + Pf6N2E2_5770 0.70 +0.2
6,587,374 - Pf6N2E2_5770 0.70 +0.3
6,587,374 - Pf6N2E2_5770 0.70 -0.8
6,587,374 - Pf6N2E2_5770 0.70 +0.2
6,587,374 - Pf6N2E2_5770 0.70 +0.8
6,587,377 + Pf6N2E2_5770 0.70 -1.2
6,587,378 - Pf6N2E2_5770 0.70 +0.2
6,587,378 - Pf6N2E2_5770 0.70 +1.0
6,587,428 + Pf6N2E2_5770 0.73 -0.0
6,587,428 + Pf6N2E2_5770 0.73 -0.2
6,587,428 + Pf6N2E2_5770 0.73 -0.8
6,587,428 + Pf6N2E2_5770 0.73 -0.3
6,587,428 + Pf6N2E2_5770 0.73 +0.9
6,587,428 + Pf6N2E2_5770 0.73 +0.8
6,587,429 - Pf6N2E2_5770 0.73 -0.4
6,587,429 - Pf6N2E2_5770 0.73 -0.8
6,587,429 - Pf6N2E2_5770 0.73 -0.2
6,587,429 - Pf6N2E2_5770 0.73 +0.4
6,587,429 - Pf6N2E2_5770 0.73 +0.5
6,587,653 - Pf6N2E2_5770 0.85 +0.5
6,587,653 - Pf6N2E2_5770 0.85 +0.2
6,587,751 + -0.7
6,587,751 + +1.0
6,587,751 + +0.9
6,587,751 + -0.3
6,587,751 + -0.1
6,587,752 - -1.2
6,587,752 - +0.3
6,587,752 - +0.9
6,587,752 - +0.4
6,587,752 - +0.2
6,587,754 + -0.1
6,587,754 + +1.0
6,587,754 + -0.7
6,587,754 + +0.8
6,587,755 - +2.0
6,587,755 - -0.3
6,587,755 - +0.4
6,587,755 - +0.7
6,587,755 - +0.1
6,587,791 - +1.0
6,587,791 - +0.9
6,587,815 - -0.3
6,587,841 + -0.3
6,587,841 + +0.0
6,587,841 + +0.3
6,587,842 - -0.1
6,587,842 - -0.1
6,587,842 - -0.0
6,587,844 + +1.3
6,587,844 + +0.6
6,587,844 + -0.5
6,587,845 - +0.8
6,587,845 - +0.8
6,587,945 + -0.2
6,587,945 + -0.2
6,588,017 + -0.4
6,588,018 - +0.5
6,588,018 - -0.1
6,588,021 + -2.3
6,588,022 - -0.4
6,588,079 + +1.0
6,588,079 + +0.1
6,588,079 + -1.2
6,588,079 + +0.6
6,588,079 + +0.3
6,588,079 + -1.5
6,588,080 - +3.0
6,588,131 + +0.4
6,588,132 - +0.2
6,588,180 + -2.8
6,588,180 + -1.5
6,588,180 + -1.7
6,588,181 - -0.9
6,588,181 - +0.6
6,588,230 + -0.8
6,588,231 - -0.4
6,588,261 - Pf6N2E2_5771 0.11 -0.1
6,588,540 + Pf6N2E2_5771 0.50 -2.0
6,588,565 + Pf6N2E2_5771 0.53 -0.4
6,588,614 + Pf6N2E2_5771 0.60 +0.3
6,588,614 + Pf6N2E2_5771 0.60 -1.1
6,588,628 + Pf6N2E2_5771 0.62 -1.3
6,588,628 + +1.0
6,588,629 - Pf6N2E2_5771 0.62 -1.0
6,588,760 + Pf6N2E2_5771 0.81 -1.5
6,588,760 + Pf6N2E2_5771 0.81 -1.4
6,588,760 + Pf6N2E2_5771 0.81 -1.6
6,588,760 + Pf6N2E2_5771 0.81 +1.4
6,588,760 + Pf6N2E2_5771 0.81 -1.3
6,588,760 + Pf6N2E2_5771 0.81 -0.5
6,588,761 - Pf6N2E2_5771 0.81 -1.4
6,588,761 - Pf6N2E2_5771 0.81 -1.1
6,588,769 + Pf6N2E2_5771 0.82 -1.5
6,588,769 + Pf6N2E2_5771 0.82 -1.8
6,588,769 + Pf6N2E2_5771 0.82 -0.3
6,588,769 + Pf6N2E2_5771 0.82 -1.1
6,588,769 + Pf6N2E2_5771 0.82 -0.8
6,588,769 + Pf6N2E2_5771 0.82 +1.0
6,588,895 + -1.9
6,588,895 + -0.8
6,588,896 - +0.0
6,588,896 - -0.6
6,588,896 - +0.5
6,588,908 + -0.8
6,588,908 + +0.2
6,588,908 + -1.1
6,588,909 - -0.6
6,588,909 - +1.5
6,588,909 - +0.7
6,588,909 - -0.4
6,588,909 - +1.3
6,588,995 - -1.6
6,588,995 - -2.1
6,588,995 - -1.2
6,588,995 - -0.8
6,588,995 - -1.0
6,588,996 + +0.2
6,588,996 + -0.7
6,588,996 + -1.6
6,588,996 + +1.4
6,588,996 + -0.2
6,588,997 - -0.6
6,588,997 - -0.5
6,588,997 - -0.6
6,588,997 - -2.3
6,589,003 - -0.5
6,589,003 - -0.9
6,589,003 - -0.5
6,589,003 - -0.9
6,589,003 - +0.5
6,589,009 + +0.1
6,589,010 - -0.8
6,589,023 + +0.4
6,589,054 + -1.7
6,589,067 + -1.0
6,589,104 + -0.1
6,589,151 + -1.2
6,589,363 + Pf6N2E2_5772 0.38 +1.2
6,589,429 + Pf6N2E2_5772 0.52 +1.3
6,589,429 + Pf6N2E2_5772 0.52 -0.7
6,589,429 + Pf6N2E2_5772 0.52 +1.5
6,589,430 - Pf6N2E2_5772 0.52 -0.8
6,589,430 - Pf6N2E2_5772 0.52 +0.3
6,589,461 + Pf6N2E2_5772 0.59 -0.5
6,589,461 + Pf6N2E2_5772 0.59 -0.3
6,589,462 - Pf6N2E2_5772 0.59 -0.3
6,589,700 + +3.0
6,589,700 - +0.4
6,589,701 - -0.3
6,589,701 - +1.0
6,589,706 + +0.5
6,589,714 + +0.3
6,589,715 - -1.7
6,589,735 + -1.0
6,589,757 + -0.7

Or see this region's nucleotide sequence