Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5730

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5729 and Pf6N2E2_5730 are separated by 313 nucleotidesPf6N2E2_5730 and Pf6N2E2_5731 are separated by 32 nucleotides Pf6N2E2_5729 - Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 6,545,655 to 6,546,764 _5729 Pf6N2E2_5730 - FIG00954480: hypothetical protein, at 6,547,078 to 6,548,136 _5730 Pf6N2E2_5731 - Putative permease often clustered with de novo purine synthesis, at 6,548,169 to 6,549,242 _5731 Position (kb) 6547 6548 6549Strain fitness (log2 ratio) -2 -1 0 1 2at 6546.880 kb on + strandat 6546.880 kb on + strandat 6546.880 kb on + strandat 6546.880 kb on + strandat 6546.880 kb on + strandat 6546.880 kb on + strandat 6546.881 kb on - strandat 6546.881 kb on - strandat 6546.881 kb on - strandat 6546.907 kb on + strandat 6546.907 kb on + strandat 6546.908 kb on - strandat 6546.908 kb on - strandat 6546.909 kb on + strandat 6546.909 kb on + strandat 6546.909 kb on + strandat 6546.909 kb on + strandat 6546.910 kb on - strandat 6546.910 kb on - strandat 6546.916 kb on - strandat 6546.933 kb on + strandat 6546.933 kb on + strandat 6546.933 kb on + strandat 6546.933 kb on + strandat 6546.933 kb on + strandat 6546.933 kb on + strandat 6546.934 kb on - strandat 6546.934 kb on - strandat 6546.935 kb on + strandat 6546.935 kb on + strandat 6546.935 kb on + strandat 6546.936 kb on - strandat 6546.936 kb on - strandat 6546.942 kb on + strandat 6546.943 kb on - strandat 6547.061 kb on - strandat 6547.101 kb on + strandat 6547.159 kb on + strandat 6547.325 kb on - strand, within Pf6N2E2_5730at 6547.330 kb on + strand, within Pf6N2E2_5730at 6547.330 kb on + strand, within Pf6N2E2_5730at 6547.646 kb on - strand, within Pf6N2E2_5730at 6548.149 kb on + strandat 6548.149 kb on + strandat 6548.149 kb on + strandat 6548.149 kb on + strandat 6548.149 kb on + strandat 6548.149 kb on + strandat 6548.149 kb on + strandat 6548.149 kb on + strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.150 kb on - strandat 6548.151 kb on + strandat 6548.151 kb on + strandat 6548.151 kb on + strandat 6548.151 kb on + strandat 6548.151 kb on + strandat 6548.151 kb on + strandat 6548.151 kb on + strandat 6548.151 kb on + strandat 6548.151 kb on + strandat 6548.151 kb on + strandat 6548.152 kb on - strandat 6548.152 kb on - strandat 6548.152 kb on - strandat 6548.152 kb on - strandat 6548.153 kb on + strandat 6548.153 kb on + strandat 6548.153 kb on + strandat 6548.153 kb on + strandat 6548.153 kb on + strandat 6548.154 kb on - strandat 6548.154 kb on - strandat 6548.154 kb on - strandat 6548.154 kb on - strandat 6548.154 kb on - strandat 6548.157 kb on + strandat 6548.157 kb on + strandat 6548.158 kb on - strandat 6548.158 kb on - strandat 6548.158 kb on - strandat 6548.158 kb on - strandat 6548.158 kb on - strandat 6548.158 kb on - strandat 6548.225 kb on + strandat 6548.225 kb on + strandat 6548.225 kb on + strandat 6548.225 kb on + strandat 6548.225 kb on + strandat 6548.226 kb on - strandat 6548.226 kb on - strandat 6548.226 kb on - strandat 6548.229 kb on + strandat 6548.229 kb on + strandat 6548.229 kb on + strandat 6548.229 kb on + strandat 6548.229 kb on + strandat 6548.230 kb on - strandat 6548.230 kb on - strandat 6548.230 kb on - strandat 6548.230 kb on - strandat 6548.280 kb on + strand, within Pf6N2E2_5731at 6548.281 kb on - strand, within Pf6N2E2_5731at 6548.281 kb on - strand, within Pf6N2E2_5731at 6548.281 kb on - strand, within Pf6N2E2_5731at 6548.351 kb on - strand, within Pf6N2E2_5731at 6548.351 kb on - strand, within Pf6N2E2_5731at 6548.497 kb on + strand, within Pf6N2E2_5731at 6548.498 kb on - strand, within Pf6N2E2_5731at 6548.498 kb on - strand, within Pf6N2E2_5731at 6548.555 kb on + strand, within Pf6N2E2_5731at 6548.555 kb on + strand, within Pf6N2E2_5731at 6548.556 kb on - strand, within Pf6N2E2_5731at 6548.556 kb on - strand, within Pf6N2E2_5731at 6548.667 kb on + strand, within Pf6N2E2_5731at 6548.667 kb on + strand, within Pf6N2E2_5731at 6548.667 kb on + strand, within Pf6N2E2_5731at 6548.667 kb on + strand, within Pf6N2E2_5731at 6548.667 kb on + strand, within Pf6N2E2_5731at 6548.668 kb on - strand, within Pf6N2E2_5731at 6548.668 kb on - strand, within Pf6N2E2_5731at 6548.668 kb on - strand, within Pf6N2E2_5731at 6548.668 kb on - strand, within Pf6N2E2_5731at 6548.826 kb on + strand, within Pf6N2E2_5731at 6548.826 kb on + strand, within Pf6N2E2_5731at 6548.826 kb on + strand, within Pf6N2E2_5731at 6548.826 kb on + strand, within Pf6N2E2_5731at 6548.826 kb on + strand, within Pf6N2E2_5731at 6548.826 kb on + strand, within Pf6N2E2_5731at 6548.826 kb on + strand, within Pf6N2E2_5731at 6548.848 kb on + strand, within Pf6N2E2_5731at 6548.907 kb on + strand, within Pf6N2E2_5731at 6548.907 kb on + strand, within Pf6N2E2_5731at 6548.907 kb on + strand, within Pf6N2E2_5731at 6548.907 kb on + strand, within Pf6N2E2_5731at 6548.907 kb on + strand, within Pf6N2E2_5731at 6548.907 kb on + strand, within Pf6N2E2_5731at 6548.907 kb on + strand, within Pf6N2E2_5731at 6548.908 kb on - strand, within Pf6N2E2_5731at 6548.908 kb on - strand, within Pf6N2E2_5731at 6548.908 kb on - strand, within Pf6N2E2_5731at 6548.927 kb on + strand, within Pf6N2E2_5731at 6549.062 kb on + strand, within Pf6N2E2_5731at 6549.062 kb on + strand, within Pf6N2E2_5731at 6549.063 kb on - strand, within Pf6N2E2_5731

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
6,546,880 + -0.9
6,546,880 + -0.3
6,546,880 + +1.3
6,546,880 + +1.0
6,546,880 + +0.4
6,546,880 + -0.2
6,546,881 - +0.6
6,546,881 - -0.5
6,546,881 - -1.9
6,546,907 + +0.6
6,546,907 + +0.6
6,546,908 - +0.2
6,546,908 - -0.8
6,546,909 + -0.5
6,546,909 + +0.5
6,546,909 + +0.0
6,546,909 + +1.6
6,546,910 - -0.2
6,546,910 - -0.9
6,546,916 - +0.5
6,546,933 + +0.5
6,546,933 + +1.7
6,546,933 + +1.3
6,546,933 + -1.0
6,546,933 + -1.0
6,546,933 + +2.6
6,546,934 - -1.2
6,546,934 - -1.1
6,546,935 + +1.3
6,546,935 + +0.9
6,546,935 + +0.2
6,546,936 - -0.7
6,546,936 - +1.1
6,546,942 + +0.7
6,546,943 - +1.0
6,547,061 - -0.3
6,547,101 + -0.8
6,547,159 + -0.1
6,547,325 - Pf6N2E2_5730 0.23 -1.1
6,547,330 + Pf6N2E2_5730 0.24 -1.0
6,547,330 + Pf6N2E2_5730 0.24 +0.2
6,547,646 - Pf6N2E2_5730 0.54 -0.6
6,548,149 + +1.0
6,548,149 + -0.2
6,548,149 + -0.1
6,548,149 + +0.4
6,548,149 + +0.7
6,548,149 + -0.5
6,548,149 + +0.7
6,548,149 + +0.0
6,548,150 - -0.8
6,548,150 - -1.6
6,548,150 - -1.0
6,548,150 - -0.3
6,548,150 - -0.1
6,548,150 - +0.3
6,548,150 - +0.8
6,548,150 - -1.7
6,548,150 - +0.3
6,548,150 - -0.1
6,548,150 - -0.5
6,548,150 - -0.6
6,548,150 - -2.0
6,548,150 - -0.1
6,548,150 - -0.6
6,548,151 + -0.6
6,548,151 + -0.2
6,548,151 + +0.2
6,548,151 + +0.3
6,548,151 + +0.7
6,548,151 + -0.4
6,548,151 + +1.0
6,548,151 + +0.4
6,548,151 + -0.2
6,548,151 + -0.2
6,548,152 - -0.0
6,548,152 - +0.2
6,548,152 - -0.9
6,548,152 - -0.5
6,548,153 + -1.1
6,548,153 + +0.5
6,548,153 + +0.1
6,548,153 + -0.2
6,548,153 + +0.6
6,548,154 - -0.5
6,548,154 - +0.0
6,548,154 - -0.7
6,548,154 - +1.5
6,548,154 - -0.5
6,548,157 + +0.9
6,548,157 + +1.1
6,548,158 - -1.0
6,548,158 - +0.5
6,548,158 - +0.3
6,548,158 - -0.5
6,548,158 - +0.0
6,548,158 - +0.8
6,548,225 + +0.3
6,548,225 + -0.7
6,548,225 + +0.2
6,548,225 + +0.8
6,548,225 + -0.3
6,548,226 - -0.9
6,548,226 - -1.4
6,548,226 - +0.7
6,548,229 + +0.5
6,548,229 + +0.2
6,548,229 + +0.6
6,548,229 + -0.5
6,548,229 + +0.3
6,548,230 - -0.6
6,548,230 - -0.8
6,548,230 - +0.0
6,548,230 - -1.5
6,548,280 + Pf6N2E2_5731 0.10 -0.1
6,548,281 - Pf6N2E2_5731 0.10 +0.3
6,548,281 - Pf6N2E2_5731 0.10 -0.0
6,548,281 - Pf6N2E2_5731 0.10 +1.0
6,548,351 - Pf6N2E2_5731 0.17 -0.4
6,548,351 - Pf6N2E2_5731 0.17 +0.5
6,548,497 + Pf6N2E2_5731 0.31 +0.1
6,548,498 - Pf6N2E2_5731 0.31 +0.5
6,548,498 - Pf6N2E2_5731 0.31 -0.5
6,548,555 + Pf6N2E2_5731 0.36 -1.0
6,548,555 + Pf6N2E2_5731 0.36 -0.4
6,548,556 - Pf6N2E2_5731 0.36 -0.3
6,548,556 - Pf6N2E2_5731 0.36 -1.5
6,548,667 + Pf6N2E2_5731 0.46 -1.8
6,548,667 + Pf6N2E2_5731 0.46 +0.7
6,548,667 + Pf6N2E2_5731 0.46 +0.2
6,548,667 + Pf6N2E2_5731 0.46 -1.1
6,548,667 + Pf6N2E2_5731 0.46 +0.6
6,548,668 - Pf6N2E2_5731 0.46 +1.2
6,548,668 - Pf6N2E2_5731 0.46 +0.0
6,548,668 - Pf6N2E2_5731 0.46 +1.1
6,548,668 - Pf6N2E2_5731 0.46 +0.5
6,548,826 + Pf6N2E2_5731 0.61 -0.1
6,548,826 + Pf6N2E2_5731 0.61 +0.4
6,548,826 + Pf6N2E2_5731 0.61 -1.4
6,548,826 + Pf6N2E2_5731 0.61 +1.5
6,548,826 + Pf6N2E2_5731 0.61 +0.7
6,548,826 + Pf6N2E2_5731 0.61 +0.5
6,548,826 + Pf6N2E2_5731 0.61 +0.5
6,548,848 + Pf6N2E2_5731 0.63 -0.1
6,548,907 + Pf6N2E2_5731 0.69 -0.5
6,548,907 + Pf6N2E2_5731 0.69 +0.2
6,548,907 + Pf6N2E2_5731 0.69 +0.5
6,548,907 + Pf6N2E2_5731 0.69 -0.7
6,548,907 + Pf6N2E2_5731 0.69 -0.8
6,548,907 + Pf6N2E2_5731 0.69 +0.8
6,548,907 + Pf6N2E2_5731 0.69 -0.2
6,548,908 - Pf6N2E2_5731 0.69 -0.3
6,548,908 - Pf6N2E2_5731 0.69 -0.6
6,548,908 - Pf6N2E2_5731 0.69 -0.2
6,548,927 + Pf6N2E2_5731 0.71 -0.8
6,549,062 + Pf6N2E2_5731 0.83 -2.3
6,549,062 + Pf6N2E2_5731 0.83 -0.6
6,549,063 - Pf6N2E2_5731 0.83 +1.5

Or see this region's nucleotide sequence