Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5729 and Pf6N2E2_5730 are separated by 313 nucleotides Pf6N2E2_5730 and Pf6N2E2_5731 are separated by 32 nucleotides
Pf6N2E2_5729 - Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 6,545,655 to 6,546,764
_5729
Pf6N2E2_5730 - FIG00954480: hypothetical protein, at 6,547,078 to 6,548,136
_5730
Pf6N2E2_5731 - Putative permease often clustered with de novo purine synthesis, at 6,548,169 to 6,549,242
_5731
Position (kb)
6547
6548
6549 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6546.880 kb on + strand at 6546.880 kb on + strand at 6546.880 kb on + strand at 6546.880 kb on + strand at 6546.880 kb on + strand at 6546.880 kb on + strand at 6546.881 kb on - strand at 6546.881 kb on - strand at 6546.881 kb on - strand at 6546.907 kb on + strand at 6546.907 kb on + strand at 6546.908 kb on - strand at 6546.908 kb on - strand at 6546.909 kb on + strand at 6546.909 kb on + strand at 6546.909 kb on + strand at 6546.909 kb on + strand at 6546.910 kb on - strand at 6546.910 kb on - strand at 6546.916 kb on - strand at 6546.933 kb on + strand at 6546.933 kb on + strand at 6546.933 kb on + strand at 6546.933 kb on + strand at 6546.933 kb on + strand at 6546.933 kb on + strand at 6546.934 kb on - strand at 6546.934 kb on - strand at 6546.935 kb on + strand at 6546.935 kb on + strand at 6546.935 kb on + strand at 6546.936 kb on - strand at 6546.936 kb on - strand at 6546.942 kb on + strand at 6546.943 kb on - strand at 6547.061 kb on - strand at 6547.101 kb on + strand at 6547.159 kb on + strand at 6547.325 kb on - strand, within Pf6N2E2_5730 at 6547.330 kb on + strand, within Pf6N2E2_5730 at 6547.330 kb on + strand, within Pf6N2E2_5730 at 6547.646 kb on - strand, within Pf6N2E2_5730 at 6548.149 kb on + strand at 6548.149 kb on + strand at 6548.149 kb on + strand at 6548.149 kb on + strand at 6548.149 kb on + strand at 6548.149 kb on + strand at 6548.149 kb on + strand at 6548.149 kb on + strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.150 kb on - strand at 6548.151 kb on + strand at 6548.151 kb on + strand at 6548.151 kb on + strand at 6548.151 kb on + strand at 6548.151 kb on + strand at 6548.151 kb on + strand at 6548.151 kb on + strand at 6548.151 kb on + strand at 6548.151 kb on + strand at 6548.151 kb on + strand at 6548.152 kb on - strand at 6548.152 kb on - strand at 6548.152 kb on - strand at 6548.152 kb on - strand at 6548.153 kb on + strand at 6548.153 kb on + strand at 6548.153 kb on + strand at 6548.153 kb on + strand at 6548.153 kb on + strand at 6548.154 kb on - strand at 6548.154 kb on - strand at 6548.154 kb on - strand at 6548.154 kb on - strand at 6548.154 kb on - strand at 6548.157 kb on + strand at 6548.157 kb on + strand at 6548.158 kb on - strand at 6548.158 kb on - strand at 6548.158 kb on - strand at 6548.158 kb on - strand at 6548.158 kb on - strand at 6548.158 kb on - strand at 6548.225 kb on + strand at 6548.225 kb on + strand at 6548.225 kb on + strand at 6548.225 kb on + strand at 6548.225 kb on + strand at 6548.226 kb on - strand at 6548.226 kb on - strand at 6548.226 kb on - strand at 6548.229 kb on + strand at 6548.229 kb on + strand at 6548.229 kb on + strand at 6548.229 kb on + strand at 6548.229 kb on + strand at 6548.230 kb on - strand at 6548.230 kb on - strand at 6548.230 kb on - strand at 6548.230 kb on - strand at 6548.280 kb on + strand, within Pf6N2E2_5731 at 6548.281 kb on - strand, within Pf6N2E2_5731 at 6548.281 kb on - strand, within Pf6N2E2_5731 at 6548.281 kb on - strand, within Pf6N2E2_5731 at 6548.351 kb on - strand, within Pf6N2E2_5731 at 6548.351 kb on - strand, within Pf6N2E2_5731 at 6548.497 kb on + strand, within Pf6N2E2_5731 at 6548.498 kb on - strand, within Pf6N2E2_5731 at 6548.498 kb on - strand, within Pf6N2E2_5731 at 6548.555 kb on + strand, within Pf6N2E2_5731 at 6548.555 kb on + strand, within Pf6N2E2_5731 at 6548.556 kb on - strand, within Pf6N2E2_5731 at 6548.556 kb on - strand, within Pf6N2E2_5731 at 6548.667 kb on + strand, within Pf6N2E2_5731 at 6548.667 kb on + strand, within Pf6N2E2_5731 at 6548.667 kb on + strand, within Pf6N2E2_5731 at 6548.667 kb on + strand, within Pf6N2E2_5731 at 6548.667 kb on + strand, within Pf6N2E2_5731 at 6548.668 kb on - strand, within Pf6N2E2_5731 at 6548.668 kb on - strand, within Pf6N2E2_5731 at 6548.668 kb on - strand, within Pf6N2E2_5731 at 6548.668 kb on - strand, within Pf6N2E2_5731 at 6548.826 kb on + strand, within Pf6N2E2_5731 at 6548.826 kb on + strand, within Pf6N2E2_5731 at 6548.826 kb on + strand, within Pf6N2E2_5731 at 6548.826 kb on + strand, within Pf6N2E2_5731 at 6548.826 kb on + strand, within Pf6N2E2_5731 at 6548.826 kb on + strand, within Pf6N2E2_5731 at 6548.826 kb on + strand, within Pf6N2E2_5731 at 6548.848 kb on + strand, within Pf6N2E2_5731 at 6548.907 kb on + strand, within Pf6N2E2_5731 at 6548.907 kb on + strand, within Pf6N2E2_5731 at 6548.907 kb on + strand, within Pf6N2E2_5731 at 6548.907 kb on + strand, within Pf6N2E2_5731 at 6548.907 kb on + strand, within Pf6N2E2_5731 at 6548.907 kb on + strand, within Pf6N2E2_5731 at 6548.907 kb on + strand, within Pf6N2E2_5731 at 6548.908 kb on - strand, within Pf6N2E2_5731 at 6548.908 kb on - strand, within Pf6N2E2_5731 at 6548.908 kb on - strand, within Pf6N2E2_5731 at 6548.927 kb on + strand, within Pf6N2E2_5731 at 6549.062 kb on + strand, within Pf6N2E2_5731 at 6549.062 kb on + strand, within Pf6N2E2_5731 at 6549.063 kb on - strand, within Pf6N2E2_5731
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 6,546,880 + -0.9 6,546,880 + -0.3 6,546,880 + +1.3 6,546,880 + +1.0 6,546,880 + +0.4 6,546,880 + -0.2 6,546,881 - +0.6 6,546,881 - -0.5 6,546,881 - -1.9 6,546,907 + +0.6 6,546,907 + +0.6 6,546,908 - +0.2 6,546,908 - -0.8 6,546,909 + -0.5 6,546,909 + +0.5 6,546,909 + +0.0 6,546,909 + +1.6 6,546,910 - -0.2 6,546,910 - -0.9 6,546,916 - +0.5 6,546,933 + +0.5 6,546,933 + +1.7 6,546,933 + +1.3 6,546,933 + -1.0 6,546,933 + -1.0 6,546,933 + +2.6 6,546,934 - -1.2 6,546,934 - -1.1 6,546,935 + +1.3 6,546,935 + +0.9 6,546,935 + +0.2 6,546,936 - -0.7 6,546,936 - +1.1 6,546,942 + +0.7 6,546,943 - +1.0 6,547,061 - -0.3 6,547,101 + -0.8 6,547,159 + -0.1 6,547,325 - Pf6N2E2_5730 0.23 -1.1 6,547,330 + Pf6N2E2_5730 0.24 -1.0 6,547,330 + Pf6N2E2_5730 0.24 +0.2 6,547,646 - Pf6N2E2_5730 0.54 -0.6 6,548,149 + +1.0 6,548,149 + -0.2 6,548,149 + -0.1 6,548,149 + +0.4 6,548,149 + +0.7 6,548,149 + -0.5 6,548,149 + +0.7 6,548,149 + +0.0 6,548,150 - -0.8 6,548,150 - -1.6 6,548,150 - -1.0 6,548,150 - -0.3 6,548,150 - -0.1 6,548,150 - +0.3 6,548,150 - +0.8 6,548,150 - -1.7 6,548,150 - +0.3 6,548,150 - -0.1 6,548,150 - -0.5 6,548,150 - -0.6 6,548,150 - -2.0 6,548,150 - -0.1 6,548,150 - -0.6 6,548,151 + -0.6 6,548,151 + -0.2 6,548,151 + +0.2 6,548,151 + +0.3 6,548,151 + +0.7 6,548,151 + -0.4 6,548,151 + +1.0 6,548,151 + +0.4 6,548,151 + -0.2 6,548,151 + -0.2 6,548,152 - -0.0 6,548,152 - +0.2 6,548,152 - -0.9 6,548,152 - -0.5 6,548,153 + -1.1 6,548,153 + +0.5 6,548,153 + +0.1 6,548,153 + -0.2 6,548,153 + +0.6 6,548,154 - -0.5 6,548,154 - +0.0 6,548,154 - -0.7 6,548,154 - +1.5 6,548,154 - -0.5 6,548,157 + +0.9 6,548,157 + +1.1 6,548,158 - -1.0 6,548,158 - +0.5 6,548,158 - +0.3 6,548,158 - -0.5 6,548,158 - +0.0 6,548,158 - +0.8 6,548,225 + +0.3 6,548,225 + -0.7 6,548,225 + +0.2 6,548,225 + +0.8 6,548,225 + -0.3 6,548,226 - -0.9 6,548,226 - -1.4 6,548,226 - +0.7 6,548,229 + +0.5 6,548,229 + +0.2 6,548,229 + +0.6 6,548,229 + -0.5 6,548,229 + +0.3 6,548,230 - -0.6 6,548,230 - -0.8 6,548,230 - +0.0 6,548,230 - -1.5 6,548,280 + Pf6N2E2_5731 0.10 -0.1 6,548,281 - Pf6N2E2_5731 0.10 +0.3 6,548,281 - Pf6N2E2_5731 0.10 -0.0 6,548,281 - Pf6N2E2_5731 0.10 +1.0 6,548,351 - Pf6N2E2_5731 0.17 -0.4 6,548,351 - Pf6N2E2_5731 0.17 +0.5 6,548,497 + Pf6N2E2_5731 0.31 +0.1 6,548,498 - Pf6N2E2_5731 0.31 +0.5 6,548,498 - Pf6N2E2_5731 0.31 -0.5 6,548,555 + Pf6N2E2_5731 0.36 -1.0 6,548,555 + Pf6N2E2_5731 0.36 -0.4 6,548,556 - Pf6N2E2_5731 0.36 -0.3 6,548,556 - Pf6N2E2_5731 0.36 -1.5 6,548,667 + Pf6N2E2_5731 0.46 -1.8 6,548,667 + Pf6N2E2_5731 0.46 +0.7 6,548,667 + Pf6N2E2_5731 0.46 +0.2 6,548,667 + Pf6N2E2_5731 0.46 -1.1 6,548,667 + Pf6N2E2_5731 0.46 +0.6 6,548,668 - Pf6N2E2_5731 0.46 +1.2 6,548,668 - Pf6N2E2_5731 0.46 +0.0 6,548,668 - Pf6N2E2_5731 0.46 +1.1 6,548,668 - Pf6N2E2_5731 0.46 +0.5 6,548,826 + Pf6N2E2_5731 0.61 -0.1 6,548,826 + Pf6N2E2_5731 0.61 +0.4 6,548,826 + Pf6N2E2_5731 0.61 -1.4 6,548,826 + Pf6N2E2_5731 0.61 +1.5 6,548,826 + Pf6N2E2_5731 0.61 +0.7 6,548,826 + Pf6N2E2_5731 0.61 +0.5 6,548,826 + Pf6N2E2_5731 0.61 +0.5 6,548,848 + Pf6N2E2_5731 0.63 -0.1 6,548,907 + Pf6N2E2_5731 0.69 -0.5 6,548,907 + Pf6N2E2_5731 0.69 +0.2 6,548,907 + Pf6N2E2_5731 0.69 +0.5 6,548,907 + Pf6N2E2_5731 0.69 -0.7 6,548,907 + Pf6N2E2_5731 0.69 -0.8 6,548,907 + Pf6N2E2_5731 0.69 +0.8 6,548,907 + Pf6N2E2_5731 0.69 -0.2 6,548,908 - Pf6N2E2_5731 0.69 -0.3 6,548,908 - Pf6N2E2_5731 0.69 -0.6 6,548,908 - Pf6N2E2_5731 0.69 -0.2 6,548,927 + Pf6N2E2_5731 0.71 -0.8 6,549,062 + Pf6N2E2_5731 0.83 -2.3 6,549,062 + Pf6N2E2_5731 0.83 -0.6 6,549,063 - Pf6N2E2_5731 0.83 +1.5
Or see this region's nucleotide sequence