Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5578 and Pf6N2E2_5579 overlap by 4 nucleotides Pf6N2E2_5579 and Pf6N2E2_5580 are separated by 403 nucleotides Pf6N2E2_5580 and Pf6N2E2_5581 are separated by 131 nucleotides
Pf6N2E2_5578 - Ferric iron ABC transporter, ATP-binding protein, at 6,396,908 to 6,398,017
_5578
Pf6N2E2_5579 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 6,398,014 to 6,398,934
_5579
Pf6N2E2_5580 - FIG00954879: hypothetical protein, at 6,399,338 to 6,399,625
_5580
Pf6N2E2_5581 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 6,399,757 to 6,401,865
_5581
Position (kb)
6398
6399 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6397.098 kb on + strand, within Pf6N2E2_5578 at 6397.098 kb on + strand, within Pf6N2E2_5578 at 6397.099 kb on - strand, within Pf6N2E2_5578 at 6397.133 kb on + strand, within Pf6N2E2_5578 at 6397.164 kb on + strand, within Pf6N2E2_5578 at 6397.165 kb on - strand, within Pf6N2E2_5578 at 6397.221 kb on + strand, within Pf6N2E2_5578 at 6397.221 kb on + strand, within Pf6N2E2_5578 at 6397.222 kb on - strand, within Pf6N2E2_5578 at 6397.222 kb on - strand, within Pf6N2E2_5578 at 6397.296 kb on + strand, within Pf6N2E2_5578 at 6397.296 kb on + strand, within Pf6N2E2_5578 at 6397.296 kb on + strand, within Pf6N2E2_5578 at 6397.296 kb on + strand, within Pf6N2E2_5578 at 6397.344 kb on + strand, within Pf6N2E2_5578 at 6397.344 kb on + strand, within Pf6N2E2_5578 at 6397.345 kb on - strand, within Pf6N2E2_5578 at 6397.345 kb on - strand, within Pf6N2E2_5578 at 6397.354 kb on - strand, within Pf6N2E2_5578 at 6397.354 kb on - strand, within Pf6N2E2_5578 at 6397.354 kb on - strand, within Pf6N2E2_5578 at 6397.746 kb on + strand, within Pf6N2E2_5578 at 6397.746 kb on + strand, within Pf6N2E2_5578 at 6397.746 kb on + strand, within Pf6N2E2_5578 at 6397.746 kb on + strand, within Pf6N2E2_5578 at 6397.746 kb on + strand, within Pf6N2E2_5578 at 6397.746 kb on + strand, within Pf6N2E2_5578 at 6397.746 kb on + strand, within Pf6N2E2_5578 at 6397.746 kb on + strand, within Pf6N2E2_5578 at 6397.746 kb on + strand, within Pf6N2E2_5578 at 6397.747 kb on - strand, within Pf6N2E2_5578 at 6398.027 kb on + strand at 6398.028 kb on - strand at 6398.378 kb on + strand, within Pf6N2E2_5579 at 6398.431 kb on + strand, within Pf6N2E2_5579 at 6398.431 kb on + strand, within Pf6N2E2_5579 at 6398.431 kb on + strand, within Pf6N2E2_5579 at 6398.431 kb on + strand, within Pf6N2E2_5579 at 6398.431 kb on + strand, within Pf6N2E2_5579 at 6398.431 kb on + strand, within Pf6N2E2_5579 at 6398.431 kb on + strand, within Pf6N2E2_5579 at 6398.432 kb on - strand, within Pf6N2E2_5579 at 6398.432 kb on - strand, within Pf6N2E2_5579 at 6398.432 kb on - strand, within Pf6N2E2_5579 at 6398.432 kb on - strand, within Pf6N2E2_5579 at 6398.432 kb on - strand, within Pf6N2E2_5579 at 6398.432 kb on - strand, within Pf6N2E2_5579 at 6398.432 kb on - strand, within Pf6N2E2_5579 at 6398.432 kb on - strand, within Pf6N2E2_5579 at 6398.432 kb on - strand, within Pf6N2E2_5579 at 6398.432 kb on - strand, within Pf6N2E2_5579 at 6398.433 kb on + strand, within Pf6N2E2_5579 at 6398.433 kb on + strand, within Pf6N2E2_5579 at 6398.434 kb on - strand, within Pf6N2E2_5579 at 6398.434 kb on - strand, within Pf6N2E2_5579 at 6398.435 kb on + strand, within Pf6N2E2_5579 at 6398.435 kb on + strand, within Pf6N2E2_5579 at 6398.435 kb on + strand, within Pf6N2E2_5579 at 6398.435 kb on + strand, within Pf6N2E2_5579 at 6398.435 kb on + strand, within Pf6N2E2_5579 at 6398.435 kb on + strand, within Pf6N2E2_5579 at 6398.436 kb on - strand, within Pf6N2E2_5579 at 6398.436 kb on - strand, within Pf6N2E2_5579 at 6398.623 kb on - strand, within Pf6N2E2_5579 at 6398.830 kb on + strand, within Pf6N2E2_5579 at 6398.831 kb on - strand, within Pf6N2E2_5579 at 6398.831 kb on - strand, within Pf6N2E2_5579 at 6398.831 kb on - strand, within Pf6N2E2_5579 at 6398.953 kb on - strand at 6399.051 kb on + strand at 6399.051 kb on + strand at 6399.058 kb on - strand at 6399.072 kb on - strand at 6399.072 kb on - strand at 6399.131 kb on + strand at 6399.131 kb on + strand at 6399.131 kb on + strand at 6399.131 kb on + strand at 6399.131 kb on + strand at 6399.132 kb on - strand at 6399.132 kb on - strand at 6399.132 kb on - strand at 6399.132 kb on - strand at 6399.132 kb on - strand at 6399.169 kb on + strand at 6399.170 kb on - strand at 6399.305 kb on + strand at 6399.306 kb on - strand at 6399.307 kb on + strand at 6399.307 kb on + strand at 6399.307 kb on + strand at 6399.307 kb on + strand at 6399.307 kb on + strand at 6399.308 kb on - strand at 6399.308 kb on - strand at 6399.308 kb on - strand at 6399.308 kb on - strand at 6399.308 kb on - strand at 6399.308 kb on - strand at 6399.703 kb on + strand at 6399.703 kb on + strand at 6399.704 kb on - strand at 6399.704 kb on - strand at 6399.741 kb on - strand at 6399.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 6,397,098 + Pf6N2E2_5578 0.17 -1.1 6,397,098 + Pf6N2E2_5578 0.17 -1.5 6,397,099 - Pf6N2E2_5578 0.17 -0.3 6,397,133 + Pf6N2E2_5578 0.20 +0.5 6,397,164 + Pf6N2E2_5578 0.23 +1.4 6,397,165 - Pf6N2E2_5578 0.23 -1.7 6,397,221 + Pf6N2E2_5578 0.28 -0.7 6,397,221 + Pf6N2E2_5578 0.28 +1.0 6,397,222 - Pf6N2E2_5578 0.28 -0.9 6,397,222 - Pf6N2E2_5578 0.28 +0.1 6,397,296 + Pf6N2E2_5578 0.35 +1.9 6,397,296 + Pf6N2E2_5578 0.35 +0.6 6,397,296 + Pf6N2E2_5578 0.35 -0.1 6,397,296 + Pf6N2E2_5578 0.35 +1.4 6,397,344 + Pf6N2E2_5578 0.39 -0.3 6,397,344 + Pf6N2E2_5578 0.39 -0.5 6,397,345 - Pf6N2E2_5578 0.39 +0.2 6,397,345 - Pf6N2E2_5578 0.39 +0.4 6,397,354 - Pf6N2E2_5578 0.40 -0.3 6,397,354 - Pf6N2E2_5578 0.40 -0.5 6,397,354 - Pf6N2E2_5578 0.40 +0.5 6,397,746 + Pf6N2E2_5578 0.75 +1.1 6,397,746 + Pf6N2E2_5578 0.75 +0.1 6,397,746 + Pf6N2E2_5578 0.75 +0.8 6,397,746 + Pf6N2E2_5578 0.75 -0.6 6,397,746 + Pf6N2E2_5578 0.75 -0.7 6,397,746 + Pf6N2E2_5578 0.75 -0.4 6,397,746 + Pf6N2E2_5578 0.75 +0.5 6,397,746 + Pf6N2E2_5578 0.75 +0.5 6,397,746 + Pf6N2E2_5578 0.75 -0.8 6,397,747 - Pf6N2E2_5578 0.76 -1.4 6,398,027 + +0.5 6,398,028 - -1.5 6,398,378 + Pf6N2E2_5579 0.40 -2.2 6,398,431 + Pf6N2E2_5579 0.45 -3.5 6,398,431 + Pf6N2E2_5579 0.45 -1.5 6,398,431 + Pf6N2E2_5579 0.45 -1.2 6,398,431 + Pf6N2E2_5579 0.45 -0.7 6,398,431 + Pf6N2E2_5579 0.45 -1.9 6,398,431 + Pf6N2E2_5579 0.45 -2.0 6,398,431 + Pf6N2E2_5579 0.45 -1.3 6,398,432 - Pf6N2E2_5579 0.45 -2.4 6,398,432 - Pf6N2E2_5579 0.45 -0.9 6,398,432 - Pf6N2E2_5579 0.45 -1.3 6,398,432 - Pf6N2E2_5579 0.45 +0.7 6,398,432 - Pf6N2E2_5579 0.45 +0.1 6,398,432 - Pf6N2E2_5579 0.45 -0.9 6,398,432 - Pf6N2E2_5579 0.45 -0.5 6,398,432 - Pf6N2E2_5579 0.45 -3.0 6,398,432 - Pf6N2E2_5579 0.45 -0.2 6,398,432 - Pf6N2E2_5579 0.45 -1.9 6,398,433 + Pf6N2E2_5579 0.45 -2.4 6,398,433 + Pf6N2E2_5579 0.45 -2.2 6,398,434 - Pf6N2E2_5579 0.46 -0.4 6,398,434 - Pf6N2E2_5579 0.46 -2.4 6,398,435 + Pf6N2E2_5579 0.46 +0.2 6,398,435 + Pf6N2E2_5579 0.46 -0.0 6,398,435 + Pf6N2E2_5579 0.46 -0.9 6,398,435 + Pf6N2E2_5579 0.46 -0.7 6,398,435 + Pf6N2E2_5579 0.46 -2.3 6,398,435 + Pf6N2E2_5579 0.46 -0.5 6,398,436 - Pf6N2E2_5579 0.46 -2.6 6,398,436 - Pf6N2E2_5579 0.46 -1.3 6,398,623 - Pf6N2E2_5579 0.66 -1.5 6,398,830 + Pf6N2E2_5579 0.89 +1.1 6,398,831 - Pf6N2E2_5579 0.89 -1.6 6,398,831 - Pf6N2E2_5579 0.89 -2.9 6,398,831 - Pf6N2E2_5579 0.89 -0.3 6,398,953 - +1.6 6,399,051 + +0.5 6,399,051 + +1.2 6,399,058 - -0.1 6,399,072 - +0.3 6,399,072 - +0.7 6,399,131 + +1.2 6,399,131 + +0.6 6,399,131 + +2.0 6,399,131 + +2.4 6,399,131 + -0.0 6,399,132 - +0.1 6,399,132 - -0.5 6,399,132 - +0.6 6,399,132 - +0.1 6,399,132 - -0.1 6,399,169 + +2.0 6,399,170 - +0.7 6,399,305 + -0.1 6,399,306 - +1.2 6,399,307 + +0.5 6,399,307 + +0.4 6,399,307 + +1.1 6,399,307 + +0.7 6,399,307 + -0.2 6,399,308 - +0.2 6,399,308 - +1.1 6,399,308 - -0.0 6,399,308 - -1.8 6,399,308 - +1.0 6,399,308 - +0.7 6,399,703 + -0.5 6,399,703 + -0.5 6,399,704 - -0.1 6,399,704 - +1.1 6,399,741 - +0.0 6,399,931 - +0.5
Or see this region's nucleotide sequence