Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5579

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5578 and Pf6N2E2_5579 overlap by 4 nucleotidesPf6N2E2_5579 and Pf6N2E2_5580 are separated by 403 nucleotidesPf6N2E2_5580 and Pf6N2E2_5581 are separated by 131 nucleotides Pf6N2E2_5578 - Ferric iron ABC transporter, ATP-binding protein, at 6,396,908 to 6,398,017 _5578 Pf6N2E2_5579 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 6,398,014 to 6,398,934 _5579 Pf6N2E2_5580 - FIG00954879: hypothetical protein, at 6,399,338 to 6,399,625 _5580 Pf6N2E2_5581 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 6,399,757 to 6,401,865 _5581 Position (kb) 6398 6399Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6397.098 kb on + strand, within Pf6N2E2_5578at 6397.098 kb on + strand, within Pf6N2E2_5578at 6397.099 kb on - strand, within Pf6N2E2_5578at 6397.133 kb on + strand, within Pf6N2E2_5578at 6397.164 kb on + strand, within Pf6N2E2_5578at 6397.165 kb on - strand, within Pf6N2E2_5578at 6397.221 kb on + strand, within Pf6N2E2_5578at 6397.221 kb on + strand, within Pf6N2E2_5578at 6397.222 kb on - strand, within Pf6N2E2_5578at 6397.222 kb on - strand, within Pf6N2E2_5578at 6397.296 kb on + strand, within Pf6N2E2_5578at 6397.296 kb on + strand, within Pf6N2E2_5578at 6397.296 kb on + strand, within Pf6N2E2_5578at 6397.296 kb on + strand, within Pf6N2E2_5578at 6397.344 kb on + strand, within Pf6N2E2_5578at 6397.344 kb on + strand, within Pf6N2E2_5578at 6397.345 kb on - strand, within Pf6N2E2_5578at 6397.345 kb on - strand, within Pf6N2E2_5578at 6397.354 kb on - strand, within Pf6N2E2_5578at 6397.354 kb on - strand, within Pf6N2E2_5578at 6397.354 kb on - strand, within Pf6N2E2_5578at 6397.746 kb on + strand, within Pf6N2E2_5578at 6397.746 kb on + strand, within Pf6N2E2_5578at 6397.746 kb on + strand, within Pf6N2E2_5578at 6397.746 kb on + strand, within Pf6N2E2_5578at 6397.746 kb on + strand, within Pf6N2E2_5578at 6397.746 kb on + strand, within Pf6N2E2_5578at 6397.746 kb on + strand, within Pf6N2E2_5578at 6397.746 kb on + strand, within Pf6N2E2_5578at 6397.746 kb on + strand, within Pf6N2E2_5578at 6397.747 kb on - strand, within Pf6N2E2_5578at 6398.027 kb on + strandat 6398.028 kb on - strandat 6398.378 kb on + strand, within Pf6N2E2_5579at 6398.431 kb on + strand, within Pf6N2E2_5579at 6398.431 kb on + strand, within Pf6N2E2_5579at 6398.431 kb on + strand, within Pf6N2E2_5579at 6398.431 kb on + strand, within Pf6N2E2_5579at 6398.431 kb on + strand, within Pf6N2E2_5579at 6398.431 kb on + strand, within Pf6N2E2_5579at 6398.431 kb on + strand, within Pf6N2E2_5579at 6398.432 kb on - strand, within Pf6N2E2_5579at 6398.432 kb on - strand, within Pf6N2E2_5579at 6398.432 kb on - strand, within Pf6N2E2_5579at 6398.432 kb on - strand, within Pf6N2E2_5579at 6398.432 kb on - strand, within Pf6N2E2_5579at 6398.432 kb on - strand, within Pf6N2E2_5579at 6398.432 kb on - strand, within Pf6N2E2_5579at 6398.432 kb on - strand, within Pf6N2E2_5579at 6398.432 kb on - strand, within Pf6N2E2_5579at 6398.432 kb on - strand, within Pf6N2E2_5579at 6398.433 kb on + strand, within Pf6N2E2_5579at 6398.433 kb on + strand, within Pf6N2E2_5579at 6398.434 kb on - strand, within Pf6N2E2_5579at 6398.434 kb on - strand, within Pf6N2E2_5579at 6398.435 kb on + strand, within Pf6N2E2_5579at 6398.435 kb on + strand, within Pf6N2E2_5579at 6398.435 kb on + strand, within Pf6N2E2_5579at 6398.435 kb on + strand, within Pf6N2E2_5579at 6398.435 kb on + strand, within Pf6N2E2_5579at 6398.435 kb on + strand, within Pf6N2E2_5579at 6398.436 kb on - strand, within Pf6N2E2_5579at 6398.436 kb on - strand, within Pf6N2E2_5579at 6398.623 kb on - strand, within Pf6N2E2_5579at 6398.830 kb on + strand, within Pf6N2E2_5579at 6398.831 kb on - strand, within Pf6N2E2_5579at 6398.831 kb on - strand, within Pf6N2E2_5579at 6398.831 kb on - strand, within Pf6N2E2_5579at 6398.953 kb on - strandat 6399.051 kb on + strandat 6399.051 kb on + strandat 6399.058 kb on - strandat 6399.072 kb on - strandat 6399.072 kb on - strandat 6399.131 kb on + strandat 6399.131 kb on + strandat 6399.131 kb on + strandat 6399.131 kb on + strandat 6399.131 kb on + strandat 6399.132 kb on - strandat 6399.132 kb on - strandat 6399.132 kb on - strandat 6399.132 kb on - strandat 6399.132 kb on - strandat 6399.169 kb on + strandat 6399.170 kb on - strandat 6399.305 kb on + strandat 6399.306 kb on - strandat 6399.307 kb on + strandat 6399.307 kb on + strandat 6399.307 kb on + strandat 6399.307 kb on + strandat 6399.307 kb on + strandat 6399.308 kb on - strandat 6399.308 kb on - strandat 6399.308 kb on - strandat 6399.308 kb on - strandat 6399.308 kb on - strandat 6399.308 kb on - strandat 6399.703 kb on + strandat 6399.703 kb on + strandat 6399.704 kb on - strandat 6399.704 kb on - strandat 6399.741 kb on - strandat 6399.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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6,397,098 + Pf6N2E2_5578 0.17 -1.1
6,397,098 + Pf6N2E2_5578 0.17 -1.5
6,397,099 - Pf6N2E2_5578 0.17 -0.3
6,397,133 + Pf6N2E2_5578 0.20 +0.5
6,397,164 + Pf6N2E2_5578 0.23 +1.4
6,397,165 - Pf6N2E2_5578 0.23 -1.7
6,397,221 + Pf6N2E2_5578 0.28 -0.7
6,397,221 + Pf6N2E2_5578 0.28 +1.0
6,397,222 - Pf6N2E2_5578 0.28 -0.9
6,397,222 - Pf6N2E2_5578 0.28 +0.1
6,397,296 + Pf6N2E2_5578 0.35 +1.9
6,397,296 + Pf6N2E2_5578 0.35 +0.6
6,397,296 + Pf6N2E2_5578 0.35 -0.1
6,397,296 + Pf6N2E2_5578 0.35 +1.4
6,397,344 + Pf6N2E2_5578 0.39 -0.3
6,397,344 + Pf6N2E2_5578 0.39 -0.5
6,397,345 - Pf6N2E2_5578 0.39 +0.2
6,397,345 - Pf6N2E2_5578 0.39 +0.4
6,397,354 - Pf6N2E2_5578 0.40 -0.3
6,397,354 - Pf6N2E2_5578 0.40 -0.5
6,397,354 - Pf6N2E2_5578 0.40 +0.5
6,397,746 + Pf6N2E2_5578 0.75 +1.1
6,397,746 + Pf6N2E2_5578 0.75 +0.1
6,397,746 + Pf6N2E2_5578 0.75 +0.8
6,397,746 + Pf6N2E2_5578 0.75 -0.6
6,397,746 + Pf6N2E2_5578 0.75 -0.7
6,397,746 + Pf6N2E2_5578 0.75 -0.4
6,397,746 + Pf6N2E2_5578 0.75 +0.5
6,397,746 + Pf6N2E2_5578 0.75 +0.5
6,397,746 + Pf6N2E2_5578 0.75 -0.8
6,397,747 - Pf6N2E2_5578 0.76 -1.4
6,398,027 + +0.5
6,398,028 - -1.5
6,398,378 + Pf6N2E2_5579 0.40 -2.2
6,398,431 + Pf6N2E2_5579 0.45 -3.5
6,398,431 + Pf6N2E2_5579 0.45 -1.5
6,398,431 + Pf6N2E2_5579 0.45 -1.2
6,398,431 + Pf6N2E2_5579 0.45 -0.7
6,398,431 + Pf6N2E2_5579 0.45 -1.9
6,398,431 + Pf6N2E2_5579 0.45 -2.0
6,398,431 + Pf6N2E2_5579 0.45 -1.3
6,398,432 - Pf6N2E2_5579 0.45 -2.4
6,398,432 - Pf6N2E2_5579 0.45 -0.9
6,398,432 - Pf6N2E2_5579 0.45 -1.3
6,398,432 - Pf6N2E2_5579 0.45 +0.7
6,398,432 - Pf6N2E2_5579 0.45 +0.1
6,398,432 - Pf6N2E2_5579 0.45 -0.9
6,398,432 - Pf6N2E2_5579 0.45 -0.5
6,398,432 - Pf6N2E2_5579 0.45 -3.0
6,398,432 - Pf6N2E2_5579 0.45 -0.2
6,398,432 - Pf6N2E2_5579 0.45 -1.9
6,398,433 + Pf6N2E2_5579 0.45 -2.4
6,398,433 + Pf6N2E2_5579 0.45 -2.2
6,398,434 - Pf6N2E2_5579 0.46 -0.4
6,398,434 - Pf6N2E2_5579 0.46 -2.4
6,398,435 + Pf6N2E2_5579 0.46 +0.2
6,398,435 + Pf6N2E2_5579 0.46 -0.0
6,398,435 + Pf6N2E2_5579 0.46 -0.9
6,398,435 + Pf6N2E2_5579 0.46 -0.7
6,398,435 + Pf6N2E2_5579 0.46 -2.3
6,398,435 + Pf6N2E2_5579 0.46 -0.5
6,398,436 - Pf6N2E2_5579 0.46 -2.6
6,398,436 - Pf6N2E2_5579 0.46 -1.3
6,398,623 - Pf6N2E2_5579 0.66 -1.5
6,398,830 + Pf6N2E2_5579 0.89 +1.1
6,398,831 - Pf6N2E2_5579 0.89 -1.6
6,398,831 - Pf6N2E2_5579 0.89 -2.9
6,398,831 - Pf6N2E2_5579 0.89 -0.3
6,398,953 - +1.6
6,399,051 + +0.5
6,399,051 + +1.2
6,399,058 - -0.1
6,399,072 - +0.3
6,399,072 - +0.7
6,399,131 + +1.2
6,399,131 + +0.6
6,399,131 + +2.0
6,399,131 + +2.4
6,399,131 + -0.0
6,399,132 - +0.1
6,399,132 - -0.5
6,399,132 - +0.6
6,399,132 - +0.1
6,399,132 - -0.1
6,399,169 + +2.0
6,399,170 - +0.7
6,399,305 + -0.1
6,399,306 - +1.2
6,399,307 + +0.5
6,399,307 + +0.4
6,399,307 + +1.1
6,399,307 + +0.7
6,399,307 + -0.2
6,399,308 - +0.2
6,399,308 - +1.1
6,399,308 - -0.0
6,399,308 - -1.8
6,399,308 - +1.0
6,399,308 - +0.7
6,399,703 + -0.5
6,399,703 + -0.5
6,399,704 - -0.1
6,399,704 - +1.1
6,399,741 - +0.0
6,399,931 - +0.5

Or see this region's nucleotide sequence