Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5555

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5553 and Pf6N2E2_5554 are separated by 234 nucleotidesPf6N2E2_5554 and Pf6N2E2_5555 are separated by 93 nucleotidesPf6N2E2_5555 and Pf6N2E2_5556 are separated by 394 nucleotides Pf6N2E2_5553 - Quinolinate synthetase (EC 2.5.1.72), at 6,369,055 to 6,370,113 _5553 Pf6N2E2_5554 - FIG023103: Predicted transmembrane protein, at 6,370,348 to 6,370,836 _5554 Pf6N2E2_5555 - Cold shock protein CspA, at 6,370,930 to 6,371,142 _5555 Pf6N2E2_5556 - Aminomethyltransferase (EC 2.1.2.10) (from data), at 6,371,537 to 6,372,661 _5556 Position (kb) 6370 6371 6372Strain fitness (log2 ratio) -2 -1 0 1 2at 6369.966 kb on + strand, within Pf6N2E2_5553at 6370.152 kb on + strandat 6370.152 kb on + strandat 6370.153 kb on - strandat 6370.153 kb on - strandat 6370.153 kb on - strandat 6370.154 kb on + strandat 6370.154 kb on + strandat 6370.155 kb on - strandat 6370.155 kb on - strandat 6370.155 kb on - strandat 6370.155 kb on - strandat 6370.155 kb on - strandat 6370.189 kb on + strandat 6370.189 kb on + strandat 6370.189 kb on + strandat 6370.190 kb on - strandat 6370.260 kb on + strandat 6370.271 kb on - strandat 6370.288 kb on + strandat 6370.289 kb on - strandat 6370.289 kb on - strandat 6370.289 kb on - strandat 6370.391 kb on + strandat 6370.392 kb on - strandat 6370.437 kb on + strand, within Pf6N2E2_5554at 6370.437 kb on + strand, within Pf6N2E2_5554at 6370.438 kb on - strand, within Pf6N2E2_5554at 6370.532 kb on - strand, within Pf6N2E2_5554at 6370.712 kb on + strand, within Pf6N2E2_5554at 6370.712 kb on + strand, within Pf6N2E2_5554at 6370.712 kb on + strand, within Pf6N2E2_5554at 6370.726 kb on - strand, within Pf6N2E2_5554at 6370.760 kb on + strand, within Pf6N2E2_5554at 6370.761 kb on - strand, within Pf6N2E2_5554at 6370.874 kb on + strandat 6370.874 kb on + strandat 6370.874 kb on + strandat 6370.883 kb on - strandat 6370.898 kb on - strandat 6370.898 kb on - strandat 6370.915 kb on + strandat 6370.932 kb on - strandat 6370.942 kb on + strandat 6370.943 kb on - strandat 6371.083 kb on - strand, within Pf6N2E2_5555at 6371.083 kb on - strand, within Pf6N2E2_5555at 6371.197 kb on + strandat 6371.198 kb on - strandat 6371.220 kb on + strandat 6371.220 kb on + strandat 6371.220 kb on + strandat 6371.221 kb on - strandat 6371.221 kb on - strandat 6371.221 kb on - strandat 6371.221 kb on - strandat 6371.221 kb on - strandat 6371.241 kb on + strandat 6371.241 kb on + strandat 6371.242 kb on - strandat 6371.253 kb on + strandat 6371.253 kb on + strandat 6371.253 kb on + strandat 6371.254 kb on - strandat 6371.254 kb on - strandat 6371.254 kb on - strandat 6371.254 kb on - strandat 6371.258 kb on + strandat 6371.320 kb on + strandat 6371.377 kb on + strandat 6371.377 kb on + strandat 6371.378 kb on - strandat 6371.378 kb on - strandat 6371.378 kb on - strandat 6371.378 kb on - strandat 6371.378 kb on - strandat 6371.378 kb on - strandat 6371.378 kb on - strandat 6371.378 kb on - strandat 6371.378 kb on - strandat 6371.378 kb on - strandat 6371.378 kb on - strandat 6371.381 kb on + strandat 6371.381 kb on + strandat 6371.382 kb on - strandat 6371.382 kb on - strandat 6371.382 kb on - strandat 6371.401 kb on - strandat 6371.401 kb on - strandat 6371.413 kb on - strandat 6371.413 kb on - strandat 6371.413 kb on - strandat 6371.434 kb on + strandat 6371.434 kb on + strandat 6371.435 kb on - strandat 6371.435 kb on - strandat 6371.437 kb on - strandat 6371.437 kb on - strandat 6371.454 kb on + strandat 6371.454 kb on + strandat 6371.454 kb on + strandat 6371.487 kb on - strandat 6371.502 kb on + strandat 6371.503 kb on - strandat 6371.503 kb on - strandat 6371.519 kb on - strandat 6371.524 kb on + strandat 6371.525 kb on - strandat 6371.550 kb on + strandat 6371.550 kb on + strandat 6371.551 kb on - strandat 6371.580 kb on - strandat 6371.585 kb on + strandat 6371.585 kb on + strandat 6371.585 kb on + strandat 6371.586 kb on - strandat 6371.640 kb on + strandat 6371.640 kb on + strandat 6371.641 kb on - strandat 6371.764 kb on + strand, within Pf6N2E2_5556at 6371.764 kb on + strand, within Pf6N2E2_5556at 6371.764 kb on + strand, within Pf6N2E2_5556at 6371.764 kb on + strand, within Pf6N2E2_5556at 6371.765 kb on - strand, within Pf6N2E2_5556at 6371.765 kb on - strand, within Pf6N2E2_5556at 6371.876 kb on + strand, within Pf6N2E2_5556at 6371.943 kb on + strand, within Pf6N2E2_5556at 6372.105 kb on + strand, within Pf6N2E2_5556at 6372.105 kb on + strand, within Pf6N2E2_5556at 6372.105 kb on + strand, within Pf6N2E2_5556at 6372.105 kb on + strand, within Pf6N2E2_5556at 6372.106 kb on - strand, within Pf6N2E2_5556at 6372.106 kb on - strand, within Pf6N2E2_5556at 6372.106 kb on - strand, within Pf6N2E2_5556at 6372.106 kb on - strand, within Pf6N2E2_5556

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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6,369,966 + Pf6N2E2_5553 0.86 -0.2
6,370,152 + +0.4
6,370,152 + -1.3
6,370,153 - -0.2
6,370,153 - +0.8
6,370,153 - +1.1
6,370,154 + +0.3
6,370,154 + +0.2
6,370,155 - -0.9
6,370,155 - +0.2
6,370,155 - -0.3
6,370,155 - -0.4
6,370,155 - +1.6
6,370,189 + +0.7
6,370,189 + +1.3
6,370,189 + +0.4
6,370,190 - +0.4
6,370,260 + +0.1
6,370,271 - +0.2
6,370,288 + +0.1
6,370,289 - -0.7
6,370,289 - -0.4
6,370,289 - +0.0
6,370,391 + +0.5
6,370,392 - +1.5
6,370,437 + Pf6N2E2_5554 0.18 +0.3
6,370,437 + Pf6N2E2_5554 0.18 +0.4
6,370,438 - Pf6N2E2_5554 0.18 +1.2
6,370,532 - Pf6N2E2_5554 0.38 +1.4
6,370,712 + Pf6N2E2_5554 0.74 +0.3
6,370,712 + Pf6N2E2_5554 0.74 -1.0
6,370,712 + Pf6N2E2_5554 0.74 +1.0
6,370,726 - Pf6N2E2_5554 0.77 +0.5
6,370,760 + Pf6N2E2_5554 0.84 +1.5
6,370,761 - Pf6N2E2_5554 0.84 +1.4
6,370,874 + -0.6
6,370,874 + +0.3
6,370,874 + -1.4
6,370,883 - -0.4
6,370,898 - +0.3
6,370,898 - +0.5
6,370,915 + -1.7
6,370,932 - +0.0
6,370,942 + +0.7
6,370,943 - -1.7
6,371,083 - Pf6N2E2_5555 0.72 -1.2
6,371,083 - Pf6N2E2_5555 0.72 -1.6
6,371,197 + -0.7
6,371,198 - +1.3
6,371,220 + -1.3
6,371,220 + -0.1
6,371,220 + -1.0
6,371,221 - +0.8
6,371,221 - +1.2
6,371,221 - -1.8
6,371,221 - -0.0
6,371,221 - -0.9
6,371,241 + -0.6
6,371,241 + +0.7
6,371,242 - -0.2
6,371,253 + +0.1
6,371,253 + -1.2
6,371,253 + -0.5
6,371,254 - -2.4
6,371,254 - -1.0
6,371,254 - +0.3
6,371,254 - +0.9
6,371,258 + -0.8
6,371,320 + +0.4
6,371,377 + +1.0
6,371,377 + +1.5
6,371,378 - -0.3
6,371,378 - +0.5
6,371,378 - -0.5
6,371,378 - -0.4
6,371,378 - +0.6
6,371,378 - -0.6
6,371,378 - +0.7
6,371,378 - +1.1
6,371,378 - -1.1
6,371,378 - -2.7
6,371,378 - -0.7
6,371,381 + -0.3
6,371,381 + +0.8
6,371,382 - +0.8
6,371,382 - +0.6
6,371,382 - -0.4
6,371,401 - +0.0
6,371,401 - -0.7
6,371,413 - -0.9
6,371,413 - -0.1
6,371,413 - +0.5
6,371,434 + -0.7
6,371,434 + -0.0
6,371,435 - -1.7
6,371,435 - +0.1
6,371,437 - +0.6
6,371,437 - -1.1
6,371,454 + -0.5
6,371,454 + -0.2
6,371,454 + -0.0
6,371,487 - +1.2
6,371,502 + +0.9
6,371,503 - -0.1
6,371,503 - +0.2
6,371,519 - -0.8
6,371,524 + +0.0
6,371,525 - -1.1
6,371,550 + -1.0
6,371,550 + -0.3
6,371,551 - -0.1
6,371,580 - -0.1
6,371,585 + +0.0
6,371,585 + +1.8
6,371,585 + +0.2
6,371,586 - +0.1
6,371,640 + -0.8
6,371,640 + -1.4
6,371,641 - -1.1
6,371,764 + Pf6N2E2_5556 0.20 +1.1
6,371,764 + Pf6N2E2_5556 0.20 -0.3
6,371,764 + Pf6N2E2_5556 0.20 +0.1
6,371,764 + Pf6N2E2_5556 0.20 -1.3
6,371,765 - Pf6N2E2_5556 0.20 -0.2
6,371,765 - Pf6N2E2_5556 0.20 +0.3
6,371,876 + Pf6N2E2_5556 0.30 -1.5
6,371,943 + Pf6N2E2_5556 0.36 -0.6
6,372,105 + Pf6N2E2_5556 0.50 +0.4
6,372,105 + Pf6N2E2_5556 0.50 +0.4
6,372,105 + Pf6N2E2_5556 0.50 -1.6
6,372,105 + Pf6N2E2_5556 0.50 -0.1
6,372,106 - Pf6N2E2_5556 0.51 -1.4
6,372,106 - Pf6N2E2_5556 0.51 -0.1
6,372,106 - Pf6N2E2_5556 0.51 -0.3
6,372,106 - Pf6N2E2_5556 0.51 -0.7

Or see this region's nucleotide sequence