Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5553 and Pf6N2E2_5554 are separated by 234 nucleotides Pf6N2E2_5554 and Pf6N2E2_5555 are separated by 93 nucleotides Pf6N2E2_5555 and Pf6N2E2_5556 are separated by 394 nucleotides
Pf6N2E2_5553 - Quinolinate synthetase (EC 2.5.1.72), at 6,369,055 to 6,370,113
_5553
Pf6N2E2_5554 - FIG023103: Predicted transmembrane protein, at 6,370,348 to 6,370,836
_5554
Pf6N2E2_5555 - Cold shock protein CspA, at 6,370,930 to 6,371,142
_5555
Pf6N2E2_5556 - Aminomethyltransferase (EC 2.1.2.10) (from data) , at 6,371,537 to 6,372,661
_5556
Position (kb)
6370
6371
6372 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6369.966 kb on + strand, within Pf6N2E2_5553 at 6370.152 kb on + strand at 6370.152 kb on + strand at 6370.153 kb on - strand at 6370.153 kb on - strand at 6370.153 kb on - strand at 6370.154 kb on + strand at 6370.154 kb on + strand at 6370.155 kb on - strand at 6370.155 kb on - strand at 6370.155 kb on - strand at 6370.155 kb on - strand at 6370.155 kb on - strand at 6370.189 kb on + strand at 6370.189 kb on + strand at 6370.189 kb on + strand at 6370.190 kb on - strand at 6370.260 kb on + strand at 6370.271 kb on - strand at 6370.288 kb on + strand at 6370.289 kb on - strand at 6370.289 kb on - strand at 6370.289 kb on - strand at 6370.391 kb on + strand at 6370.392 kb on - strand at 6370.437 kb on + strand, within Pf6N2E2_5554 at 6370.437 kb on + strand, within Pf6N2E2_5554 at 6370.438 kb on - strand, within Pf6N2E2_5554 at 6370.532 kb on - strand, within Pf6N2E2_5554 at 6370.712 kb on + strand, within Pf6N2E2_5554 at 6370.712 kb on + strand, within Pf6N2E2_5554 at 6370.712 kb on + strand, within Pf6N2E2_5554 at 6370.726 kb on - strand, within Pf6N2E2_5554 at 6370.760 kb on + strand, within Pf6N2E2_5554 at 6370.761 kb on - strand, within Pf6N2E2_5554 at 6370.874 kb on + strand at 6370.874 kb on + strand at 6370.874 kb on + strand at 6370.883 kb on - strand at 6370.898 kb on - strand at 6370.898 kb on - strand at 6370.915 kb on + strand at 6370.932 kb on - strand at 6370.942 kb on + strand at 6370.943 kb on - strand at 6371.083 kb on - strand, within Pf6N2E2_5555 at 6371.083 kb on - strand, within Pf6N2E2_5555 at 6371.197 kb on + strand at 6371.198 kb on - strand at 6371.220 kb on + strand at 6371.220 kb on + strand at 6371.220 kb on + strand at 6371.221 kb on - strand at 6371.221 kb on - strand at 6371.221 kb on - strand at 6371.221 kb on - strand at 6371.221 kb on - strand at 6371.241 kb on + strand at 6371.241 kb on + strand at 6371.242 kb on - strand at 6371.253 kb on + strand at 6371.253 kb on + strand at 6371.253 kb on + strand at 6371.254 kb on - strand at 6371.254 kb on - strand at 6371.254 kb on - strand at 6371.254 kb on - strand at 6371.258 kb on + strand at 6371.320 kb on + strand at 6371.377 kb on + strand at 6371.377 kb on + strand at 6371.378 kb on - strand at 6371.378 kb on - strand at 6371.378 kb on - strand at 6371.378 kb on - strand at 6371.378 kb on - strand at 6371.378 kb on - strand at 6371.378 kb on - strand at 6371.378 kb on - strand at 6371.378 kb on - strand at 6371.378 kb on - strand at 6371.378 kb on - strand at 6371.381 kb on + strand at 6371.381 kb on + strand at 6371.382 kb on - strand at 6371.382 kb on - strand at 6371.382 kb on - strand at 6371.401 kb on - strand at 6371.401 kb on - strand at 6371.413 kb on - strand at 6371.413 kb on - strand at 6371.413 kb on - strand at 6371.434 kb on + strand at 6371.434 kb on + strand at 6371.435 kb on - strand at 6371.435 kb on - strand at 6371.437 kb on - strand at 6371.437 kb on - strand at 6371.454 kb on + strand at 6371.454 kb on + strand at 6371.454 kb on + strand at 6371.487 kb on - strand at 6371.502 kb on + strand at 6371.503 kb on - strand at 6371.503 kb on - strand at 6371.519 kb on - strand at 6371.524 kb on + strand at 6371.525 kb on - strand at 6371.550 kb on + strand at 6371.550 kb on + strand at 6371.551 kb on - strand at 6371.580 kb on - strand at 6371.585 kb on + strand at 6371.585 kb on + strand at 6371.585 kb on + strand at 6371.586 kb on - strand at 6371.640 kb on + strand at 6371.640 kb on + strand at 6371.641 kb on - strand at 6371.764 kb on + strand, within Pf6N2E2_5556 at 6371.764 kb on + strand, within Pf6N2E2_5556 at 6371.764 kb on + strand, within Pf6N2E2_5556 at 6371.764 kb on + strand, within Pf6N2E2_5556 at 6371.765 kb on - strand, within Pf6N2E2_5556 at 6371.765 kb on - strand, within Pf6N2E2_5556 at 6371.876 kb on + strand, within Pf6N2E2_5556 at 6371.943 kb on + strand, within Pf6N2E2_5556 at 6372.105 kb on + strand, within Pf6N2E2_5556 at 6372.105 kb on + strand, within Pf6N2E2_5556 at 6372.105 kb on + strand, within Pf6N2E2_5556 at 6372.105 kb on + strand, within Pf6N2E2_5556 at 6372.106 kb on - strand, within Pf6N2E2_5556 at 6372.106 kb on - strand, within Pf6N2E2_5556 at 6372.106 kb on - strand, within Pf6N2E2_5556 at 6372.106 kb on - strand, within Pf6N2E2_5556
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 6,369,966 + Pf6N2E2_5553 0.86 -0.2 6,370,152 + +0.4 6,370,152 + -1.3 6,370,153 - -0.2 6,370,153 - +0.8 6,370,153 - +1.1 6,370,154 + +0.3 6,370,154 + +0.2 6,370,155 - -0.9 6,370,155 - +0.2 6,370,155 - -0.3 6,370,155 - -0.4 6,370,155 - +1.6 6,370,189 + +0.7 6,370,189 + +1.3 6,370,189 + +0.4 6,370,190 - +0.4 6,370,260 + +0.1 6,370,271 - +0.2 6,370,288 + +0.1 6,370,289 - -0.7 6,370,289 - -0.4 6,370,289 - +0.0 6,370,391 + +0.5 6,370,392 - +1.5 6,370,437 + Pf6N2E2_5554 0.18 +0.3 6,370,437 + Pf6N2E2_5554 0.18 +0.4 6,370,438 - Pf6N2E2_5554 0.18 +1.2 6,370,532 - Pf6N2E2_5554 0.38 +1.4 6,370,712 + Pf6N2E2_5554 0.74 +0.3 6,370,712 + Pf6N2E2_5554 0.74 -1.0 6,370,712 + Pf6N2E2_5554 0.74 +1.0 6,370,726 - Pf6N2E2_5554 0.77 +0.5 6,370,760 + Pf6N2E2_5554 0.84 +1.5 6,370,761 - Pf6N2E2_5554 0.84 +1.4 6,370,874 + -0.6 6,370,874 + +0.3 6,370,874 + -1.4 6,370,883 - -0.4 6,370,898 - +0.3 6,370,898 - +0.5 6,370,915 + -1.7 6,370,932 - +0.0 6,370,942 + +0.7 6,370,943 - -1.7 6,371,083 - Pf6N2E2_5555 0.72 -1.2 6,371,083 - Pf6N2E2_5555 0.72 -1.6 6,371,197 + -0.7 6,371,198 - +1.3 6,371,220 + -1.3 6,371,220 + -0.1 6,371,220 + -1.0 6,371,221 - +0.8 6,371,221 - +1.2 6,371,221 - -1.8 6,371,221 - -0.0 6,371,221 - -0.9 6,371,241 + -0.6 6,371,241 + +0.7 6,371,242 - -0.2 6,371,253 + +0.1 6,371,253 + -1.2 6,371,253 + -0.5 6,371,254 - -2.4 6,371,254 - -1.0 6,371,254 - +0.3 6,371,254 - +0.9 6,371,258 + -0.8 6,371,320 + +0.4 6,371,377 + +1.0 6,371,377 + +1.5 6,371,378 - -0.3 6,371,378 - +0.5 6,371,378 - -0.5 6,371,378 - -0.4 6,371,378 - +0.6 6,371,378 - -0.6 6,371,378 - +0.7 6,371,378 - +1.1 6,371,378 - -1.1 6,371,378 - -2.7 6,371,378 - -0.7 6,371,381 + -0.3 6,371,381 + +0.8 6,371,382 - +0.8 6,371,382 - +0.6 6,371,382 - -0.4 6,371,401 - +0.0 6,371,401 - -0.7 6,371,413 - -0.9 6,371,413 - -0.1 6,371,413 - +0.5 6,371,434 + -0.7 6,371,434 + -0.0 6,371,435 - -1.7 6,371,435 - +0.1 6,371,437 - +0.6 6,371,437 - -1.1 6,371,454 + -0.5 6,371,454 + -0.2 6,371,454 + -0.0 6,371,487 - +1.2 6,371,502 + +0.9 6,371,503 - -0.1 6,371,503 - +0.2 6,371,519 - -0.8 6,371,524 + +0.0 6,371,525 - -1.1 6,371,550 + -1.0 6,371,550 + -0.3 6,371,551 - -0.1 6,371,580 - -0.1 6,371,585 + +0.0 6,371,585 + +1.8 6,371,585 + +0.2 6,371,586 - +0.1 6,371,640 + -0.8 6,371,640 + -1.4 6,371,641 - -1.1 6,371,764 + Pf6N2E2_5556 0.20 +1.1 6,371,764 + Pf6N2E2_5556 0.20 -0.3 6,371,764 + Pf6N2E2_5556 0.20 +0.1 6,371,764 + Pf6N2E2_5556 0.20 -1.3 6,371,765 - Pf6N2E2_5556 0.20 -0.2 6,371,765 - Pf6N2E2_5556 0.20 +0.3 6,371,876 + Pf6N2E2_5556 0.30 -1.5 6,371,943 + Pf6N2E2_5556 0.36 -0.6 6,372,105 + Pf6N2E2_5556 0.50 +0.4 6,372,105 + Pf6N2E2_5556 0.50 +0.4 6,372,105 + Pf6N2E2_5556 0.50 -1.6 6,372,105 + Pf6N2E2_5556 0.50 -0.1 6,372,106 - Pf6N2E2_5556 0.51 -1.4 6,372,106 - Pf6N2E2_5556 0.51 -0.1 6,372,106 - Pf6N2E2_5556 0.51 -0.3 6,372,106 - Pf6N2E2_5556 0.51 -0.7
Or see this region's nucleotide sequence