Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5500

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5498 and Pf6N2E2_5499 overlap by 4 nucleotidesPf6N2E2_5499 and Pf6N2E2_5500 are separated by 29 nucleotidesPf6N2E2_5500 and Pf6N2E2_5501 overlap by 4 nucleotides Pf6N2E2_5498 - POSSIBLE CONSERVED MEMBRANE PROTEIN, at 6,316,281 to 6,317,612 _5498 Pf6N2E2_5499 - hypothetical protein, at 6,317,609 to 6,317,758 _5499 Pf6N2E2_5500 - MoxR-like ATPases, at 6,317,788 to 6,318,792 _5500 Pf6N2E2_5501 - FIG00955538: hypothetical protein, at 6,318,789 to 6,319,952 _5501 Position (kb) 6317 6318 6319Strain fitness (log2 ratio) -1 0 1 2 3 4at 6316.795 kb on + strand, within Pf6N2E2_5498at 6316.795 kb on + strand, within Pf6N2E2_5498at 6316.795 kb on + strand, within Pf6N2E2_5498at 6316.796 kb on - strand, within Pf6N2E2_5498at 6316.796 kb on - strand, within Pf6N2E2_5498at 6317.092 kb on + strand, within Pf6N2E2_5498at 6317.093 kb on - strand, within Pf6N2E2_5498at 6317.093 kb on - strand, within Pf6N2E2_5498at 6317.114 kb on - strand, within Pf6N2E2_5498at 6317.418 kb on + strand, within Pf6N2E2_5498at 6317.666 kb on - strand, within Pf6N2E2_5499at 6317.744 kb on - strandat 6317.744 kb on - strandat 6317.785 kb on + strandat 6318.049 kb on + strand, within Pf6N2E2_5500at 6318.050 kb on - strand, within Pf6N2E2_5500at 6318.276 kb on - strand, within Pf6N2E2_5500at 6318.491 kb on + strand, within Pf6N2E2_5500at 6318.491 kb on + strand, within Pf6N2E2_5500at 6318.771 kb on + strandat 6318.792 kb on + strandat 6318.793 kb on - strandat 6318.921 kb on + strand, within Pf6N2E2_5501at 6318.922 kb on - strand, within Pf6N2E2_5501at 6318.922 kb on - strand, within Pf6N2E2_5501at 6319.015 kb on + strand, within Pf6N2E2_5501at 6319.015 kb on + strand, within Pf6N2E2_5501at 6319.183 kb on + strand, within Pf6N2E2_5501at 6319.184 kb on - strand, within Pf6N2E2_5501at 6319.258 kb on + strand, within Pf6N2E2_5501at 6319.282 kb on + strand, within Pf6N2E2_5501at 6319.282 kb on + strand, within Pf6N2E2_5501at 6319.282 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.474 kb on + strand, within Pf6N2E2_5501at 6319.474 kb on + strand, within Pf6N2E2_5501

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
6,316,795 + Pf6N2E2_5498 0.39 +0.3
6,316,795 + Pf6N2E2_5498 0.39 +1.2
6,316,795 + Pf6N2E2_5498 0.39 +0.6
6,316,796 - Pf6N2E2_5498 0.39 +1.1
6,316,796 - Pf6N2E2_5498 0.39 +1.0
6,317,092 + Pf6N2E2_5498 0.61 -0.1
6,317,093 - Pf6N2E2_5498 0.61 +0.1
6,317,093 - Pf6N2E2_5498 0.61 +0.6
6,317,114 - Pf6N2E2_5498 0.63 +2.0
6,317,418 + Pf6N2E2_5498 0.85 +0.3
6,317,666 - Pf6N2E2_5499 0.38 +0.4
6,317,744 - +4.3
6,317,744 - -0.2
6,317,785 + +0.7
6,318,049 + Pf6N2E2_5500 0.26 -0.5
6,318,050 - Pf6N2E2_5500 0.26 -0.8
6,318,276 - Pf6N2E2_5500 0.49 -0.4
6,318,491 + Pf6N2E2_5500 0.70 -0.8
6,318,491 + Pf6N2E2_5500 0.70 -0.5
6,318,771 + +0.1
6,318,792 + +1.0
6,318,793 - +1.0
6,318,921 + Pf6N2E2_5501 0.11 +0.4
6,318,922 - Pf6N2E2_5501 0.11 -0.2
6,318,922 - Pf6N2E2_5501 0.11 +0.4
6,319,015 + Pf6N2E2_5501 0.19 -1.5
6,319,015 + Pf6N2E2_5501 0.19 -0.9
6,319,183 + Pf6N2E2_5501 0.34 +0.4
6,319,184 - Pf6N2E2_5501 0.34 +0.7
6,319,258 + Pf6N2E2_5501 0.40 +0.1
6,319,282 + Pf6N2E2_5501 0.42 +0.4
6,319,282 + Pf6N2E2_5501 0.42 +0.3
6,319,282 + Pf6N2E2_5501 0.42 +0.3
6,319,447 + Pf6N2E2_5501 0.57 -1.1
6,319,447 + Pf6N2E2_5501 0.57 +0.4
6,319,447 + Pf6N2E2_5501 0.57 -1.3
6,319,447 + Pf6N2E2_5501 0.57 +0.8
6,319,448 - Pf6N2E2_5501 0.57 +1.0
6,319,448 - Pf6N2E2_5501 0.57 -0.7
6,319,448 - Pf6N2E2_5501 0.57 -0.5
6,319,448 - Pf6N2E2_5501 0.57 +0.6
6,319,448 - Pf6N2E2_5501 0.57 +0.6
6,319,448 - Pf6N2E2_5501 0.57 +0.5
6,319,474 + Pf6N2E2_5501 0.59 +0.8
6,319,474 + Pf6N2E2_5501 0.59 +0.4

Or see this region's nucleotide sequence