Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5343 and Pf6N2E2_5344 are separated by 102 nucleotides Pf6N2E2_5344 and Pf6N2E2_5345 overlap by 1 nucleotides Pf6N2E2_5345 and Pf6N2E2_5346 are separated by 341 nucleotides
Pf6N2E2_5343 - Phosphoheptose isomerase (EC 5.3.1.-), at 6,137,005 to 6,137,598
_5343
Pf6N2E2_5344 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 6,137,701 to 6,138,063
_5344
Pf6N2E2_5345 - LppC putative lipoprotein, at 6,138,063 to 6,139,874
_5345
Pf6N2E2_5346 - rRNA small subunit methyltransferase I, at 6,140,216 to 6,141,088
_5346
Position (kb)
6138
6139
6140 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6137.611 kb on - strand at 6137.611 kb on - strand at 6137.611 kb on - strand at 6137.611 kb on - strand at 6137.611 kb on - strand at 6137.611 kb on - strand at 6137.615 kb on - strand at 6137.814 kb on - strand, within Pf6N2E2_5344 at 6137.884 kb on - strand, within Pf6N2E2_5344 at 6137.912 kb on - strand, within Pf6N2E2_5344 at 6137.912 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.920 kb on - strand, within Pf6N2E2_5344 at 6137.920 kb on - strand, within Pf6N2E2_5344 at 6138.132 kb on + strand at 6138.237 kb on + strand at 6138.237 kb on + strand at 6138.250 kb on + strand, within Pf6N2E2_5345 at 6138.250 kb on + strand, within Pf6N2E2_5345 at 6138.370 kb on + strand, within Pf6N2E2_5345 at 6138.371 kb on - strand, within Pf6N2E2_5345 at 6138.416 kb on - strand, within Pf6N2E2_5345 at 6138.436 kb on + strand, within Pf6N2E2_5345 at 6138.437 kb on - strand, within Pf6N2E2_5345 at 6138.847 kb on + strand, within Pf6N2E2_5345 at 6138.847 kb on + strand, within Pf6N2E2_5345 at 6138.847 kb on + strand, within Pf6N2E2_5345 at 6138.848 kb on - strand, within Pf6N2E2_5345 at 6138.848 kb on - strand, within Pf6N2E2_5345 at 6138.848 kb on - strand, within Pf6N2E2_5345 at 6138.996 kb on + strand, within Pf6N2E2_5345 at 6138.997 kb on + strand, within Pf6N2E2_5345 at 6138.997 kb on + strand, within Pf6N2E2_5345 at 6138.998 kb on - strand, within Pf6N2E2_5345 at 6139.043 kb on - strand, within Pf6N2E2_5345 at 6139.043 kb on - strand, within Pf6N2E2_5345 at 6139.876 kb on + strand at 6139.876 kb on + strand at 6139.876 kb on + strand at 6139.876 kb on + strand at 6139.876 kb on + strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.877 kb on - strand at 6139.902 kb on + strand at 6139.916 kb on - strand at 6139.916 kb on - strand at 6139.944 kb on - strand at 6139.965 kb on + strand at 6139.966 kb on - strand at 6139.966 kb on - strand at 6140.069 kb on + strand at 6140.069 kb on + strand at 6140.069 kb on + strand at 6140.070 kb on - strand at 6140.098 kb on + strand at 6140.179 kb on + strand at 6140.179 kb on + strand at 6140.179 kb on + strand at 6140.194 kb on + strand at 6140.208 kb on + strand at 6140.208 kb on + strand at 6140.209 kb on - strand at 6140.258 kb on + strand at 6140.258 kb on + strand at 6140.258 kb on + strand at 6140.259 kb on - strand at 6140.259 kb on - strand at 6140.294 kb on - strand at 6140.689 kb on + strand, within Pf6N2E2_5346 at 6140.689 kb on + strand, within Pf6N2E2_5346 at 6140.689 kb on + strand, within Pf6N2E2_5346 at 6140.690 kb on - strand, within Pf6N2E2_5346 at 6140.721 kb on - strand, within Pf6N2E2_5346
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 6,137,611 - +0.1 6,137,611 - -0.5 6,137,611 - -0.7 6,137,611 - +0.4 6,137,611 - -1.2 6,137,611 - +0.5 6,137,615 - -0.2 6,137,814 - Pf6N2E2_5344 0.31 -1.5 6,137,884 - Pf6N2E2_5344 0.50 +0.5 6,137,912 - Pf6N2E2_5344 0.58 -1.2 6,137,912 - Pf6N2E2_5344 0.58 +0.8 6,137,915 - Pf6N2E2_5344 0.59 +0.3 6,137,915 - Pf6N2E2_5344 0.59 -0.2 6,137,915 - Pf6N2E2_5344 0.59 +0.2 6,137,915 - Pf6N2E2_5344 0.59 -0.2 6,137,915 - Pf6N2E2_5344 0.59 -1.0 6,137,915 - Pf6N2E2_5344 0.59 +0.9 6,137,920 - Pf6N2E2_5344 0.60 -0.3 6,137,920 - Pf6N2E2_5344 0.60 +2.0 6,138,132 + -0.1 6,138,237 + -1.3 6,138,237 + -1.1 6,138,250 + Pf6N2E2_5345 0.10 -0.0 6,138,250 + Pf6N2E2_5345 0.10 -1.3 6,138,370 + Pf6N2E2_5345 0.17 -1.3 6,138,371 - Pf6N2E2_5345 0.17 -1.9 6,138,416 - Pf6N2E2_5345 0.19 -2.1 6,138,436 + Pf6N2E2_5345 0.21 -2.2 6,138,437 - Pf6N2E2_5345 0.21 -0.8 6,138,847 + Pf6N2E2_5345 0.43 -0.7 6,138,847 + Pf6N2E2_5345 0.43 +0.2 6,138,847 + Pf6N2E2_5345 0.43 -2.3 6,138,848 - Pf6N2E2_5345 0.43 -2.5 6,138,848 - Pf6N2E2_5345 0.43 +0.7 6,138,848 - Pf6N2E2_5345 0.43 -1.5 6,138,996 + Pf6N2E2_5345 0.51 -3.2 6,138,997 + Pf6N2E2_5345 0.52 -1.4 6,138,997 + Pf6N2E2_5345 0.52 -1.4 6,138,998 - Pf6N2E2_5345 0.52 -0.3 6,139,043 - Pf6N2E2_5345 0.54 -0.9 6,139,043 - Pf6N2E2_5345 0.54 -1.9 6,139,876 + -0.9 6,139,876 + -0.7 6,139,876 + -2.3 6,139,876 + -0.7 6,139,876 + -0.5 6,139,877 - -1.8 6,139,877 - -1.4 6,139,877 - -1.3 6,139,877 - -2.8 6,139,877 - -0.9 6,139,877 - -1.1 6,139,877 - -1.9 6,139,877 - -2.7 6,139,877 - -0.6 6,139,877 - -1.9 6,139,877 - -1.1 6,139,877 - -1.3 6,139,877 - -1.0 6,139,902 + -1.7 6,139,916 - +0.1 6,139,916 - -1.1 6,139,944 - -1.0 6,139,965 + -1.8 6,139,966 - +2.1 6,139,966 - +3.6 6,140,069 + -0.7 6,140,069 + -1.0 6,140,069 + -0.4 6,140,070 - +1.4 6,140,098 + +0.0 6,140,179 + +0.3 6,140,179 + +0.1 6,140,179 + -2.0 6,140,194 + -0.9 6,140,208 + +0.4 6,140,208 + +0.5 6,140,209 - +0.3 6,140,258 + -0.6 6,140,258 + +1.1 6,140,258 + +0.3 6,140,259 - +0.5 6,140,259 - +1.5 6,140,294 - +1.8 6,140,689 + Pf6N2E2_5346 0.54 -0.2 6,140,689 + Pf6N2E2_5346 0.54 +0.3 6,140,689 + Pf6N2E2_5346 0.54 -0.9 6,140,690 - Pf6N2E2_5346 0.54 +2.1 6,140,721 - Pf6N2E2_5346 0.58 +1.0
Or see this region's nucleotide sequence