Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5345

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5343 and Pf6N2E2_5344 are separated by 102 nucleotidesPf6N2E2_5344 and Pf6N2E2_5345 overlap by 1 nucleotidesPf6N2E2_5345 and Pf6N2E2_5346 are separated by 341 nucleotides Pf6N2E2_5343 - Phosphoheptose isomerase (EC 5.3.1.-), at 6,137,005 to 6,137,598 _5343 Pf6N2E2_5344 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 6,137,701 to 6,138,063 _5344 Pf6N2E2_5345 - LppC putative lipoprotein, at 6,138,063 to 6,139,874 _5345 Pf6N2E2_5346 - rRNA small subunit methyltransferase I, at 6,140,216 to 6,141,088 _5346 Position (kb) 6138 6139 6140Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6137.611 kb on - strandat 6137.611 kb on - strandat 6137.611 kb on - strandat 6137.611 kb on - strandat 6137.611 kb on - strandat 6137.611 kb on - strandat 6137.615 kb on - strandat 6137.814 kb on - strand, within Pf6N2E2_5344at 6137.884 kb on - strand, within Pf6N2E2_5344at 6137.912 kb on - strand, within Pf6N2E2_5344at 6137.912 kb on - strand, within Pf6N2E2_5344at 6137.915 kb on - strand, within Pf6N2E2_5344at 6137.915 kb on - strand, within Pf6N2E2_5344at 6137.915 kb on - strand, within Pf6N2E2_5344at 6137.915 kb on - strand, within Pf6N2E2_5344at 6137.915 kb on - strand, within Pf6N2E2_5344at 6137.915 kb on - strand, within Pf6N2E2_5344at 6137.920 kb on - strand, within Pf6N2E2_5344at 6137.920 kb on - strand, within Pf6N2E2_5344at 6138.132 kb on + strandat 6138.237 kb on + strandat 6138.237 kb on + strandat 6138.250 kb on + strand, within Pf6N2E2_5345at 6138.250 kb on + strand, within Pf6N2E2_5345at 6138.370 kb on + strand, within Pf6N2E2_5345at 6138.371 kb on - strand, within Pf6N2E2_5345at 6138.416 kb on - strand, within Pf6N2E2_5345at 6138.436 kb on + strand, within Pf6N2E2_5345at 6138.437 kb on - strand, within Pf6N2E2_5345at 6138.847 kb on + strand, within Pf6N2E2_5345at 6138.847 kb on + strand, within Pf6N2E2_5345at 6138.847 kb on + strand, within Pf6N2E2_5345at 6138.848 kb on - strand, within Pf6N2E2_5345at 6138.848 kb on - strand, within Pf6N2E2_5345at 6138.848 kb on - strand, within Pf6N2E2_5345at 6138.996 kb on + strand, within Pf6N2E2_5345at 6138.997 kb on + strand, within Pf6N2E2_5345at 6138.997 kb on + strand, within Pf6N2E2_5345at 6138.998 kb on - strand, within Pf6N2E2_5345at 6139.043 kb on - strand, within Pf6N2E2_5345at 6139.043 kb on - strand, within Pf6N2E2_5345at 6139.876 kb on + strandat 6139.876 kb on + strandat 6139.876 kb on + strandat 6139.876 kb on + strandat 6139.876 kb on + strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.877 kb on - strandat 6139.902 kb on + strandat 6139.916 kb on - strandat 6139.916 kb on - strandat 6139.944 kb on - strandat 6139.965 kb on + strandat 6139.966 kb on - strandat 6139.966 kb on - strandat 6140.069 kb on + strandat 6140.069 kb on + strandat 6140.069 kb on + strandat 6140.070 kb on - strandat 6140.098 kb on + strandat 6140.179 kb on + strandat 6140.179 kb on + strandat 6140.179 kb on + strandat 6140.194 kb on + strandat 6140.208 kb on + strandat 6140.208 kb on + strandat 6140.209 kb on - strandat 6140.258 kb on + strandat 6140.258 kb on + strandat 6140.258 kb on + strandat 6140.259 kb on - strandat 6140.259 kb on - strandat 6140.294 kb on - strandat 6140.689 kb on + strand, within Pf6N2E2_5346at 6140.689 kb on + strand, within Pf6N2E2_5346at 6140.689 kb on + strand, within Pf6N2E2_5346at 6140.690 kb on - strand, within Pf6N2E2_5346at 6140.721 kb on - strand, within Pf6N2E2_5346

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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6,137,611 - +0.1
6,137,611 - -0.5
6,137,611 - -0.7
6,137,611 - +0.4
6,137,611 - -1.2
6,137,611 - +0.5
6,137,615 - -0.2
6,137,814 - Pf6N2E2_5344 0.31 -1.5
6,137,884 - Pf6N2E2_5344 0.50 +0.5
6,137,912 - Pf6N2E2_5344 0.58 -1.2
6,137,912 - Pf6N2E2_5344 0.58 +0.8
6,137,915 - Pf6N2E2_5344 0.59 +0.3
6,137,915 - Pf6N2E2_5344 0.59 -0.2
6,137,915 - Pf6N2E2_5344 0.59 +0.2
6,137,915 - Pf6N2E2_5344 0.59 -0.2
6,137,915 - Pf6N2E2_5344 0.59 -1.0
6,137,915 - Pf6N2E2_5344 0.59 +0.9
6,137,920 - Pf6N2E2_5344 0.60 -0.3
6,137,920 - Pf6N2E2_5344 0.60 +2.0
6,138,132 + -0.1
6,138,237 + -1.3
6,138,237 + -1.1
6,138,250 + Pf6N2E2_5345 0.10 -0.0
6,138,250 + Pf6N2E2_5345 0.10 -1.3
6,138,370 + Pf6N2E2_5345 0.17 -1.3
6,138,371 - Pf6N2E2_5345 0.17 -1.9
6,138,416 - Pf6N2E2_5345 0.19 -2.1
6,138,436 + Pf6N2E2_5345 0.21 -2.2
6,138,437 - Pf6N2E2_5345 0.21 -0.8
6,138,847 + Pf6N2E2_5345 0.43 -0.7
6,138,847 + Pf6N2E2_5345 0.43 +0.2
6,138,847 + Pf6N2E2_5345 0.43 -2.3
6,138,848 - Pf6N2E2_5345 0.43 -2.5
6,138,848 - Pf6N2E2_5345 0.43 +0.7
6,138,848 - Pf6N2E2_5345 0.43 -1.5
6,138,996 + Pf6N2E2_5345 0.51 -3.2
6,138,997 + Pf6N2E2_5345 0.52 -1.4
6,138,997 + Pf6N2E2_5345 0.52 -1.4
6,138,998 - Pf6N2E2_5345 0.52 -0.3
6,139,043 - Pf6N2E2_5345 0.54 -0.9
6,139,043 - Pf6N2E2_5345 0.54 -1.9
6,139,876 + -0.9
6,139,876 + -0.7
6,139,876 + -2.3
6,139,876 + -0.7
6,139,876 + -0.5
6,139,877 - -1.8
6,139,877 - -1.4
6,139,877 - -1.3
6,139,877 - -2.8
6,139,877 - -0.9
6,139,877 - -1.1
6,139,877 - -1.9
6,139,877 - -2.7
6,139,877 - -0.6
6,139,877 - -1.9
6,139,877 - -1.1
6,139,877 - -1.3
6,139,877 - -1.0
6,139,902 + -1.7
6,139,916 - +0.1
6,139,916 - -1.1
6,139,944 - -1.0
6,139,965 + -1.8
6,139,966 - +2.1
6,139,966 - +3.6
6,140,069 + -0.7
6,140,069 + -1.0
6,140,069 + -0.4
6,140,070 - +1.4
6,140,098 + +0.0
6,140,179 + +0.3
6,140,179 + +0.1
6,140,179 + -2.0
6,140,194 + -0.9
6,140,208 + +0.4
6,140,208 + +0.5
6,140,209 - +0.3
6,140,258 + -0.6
6,140,258 + +1.1
6,140,258 + +0.3
6,140,259 - +0.5
6,140,259 - +1.5
6,140,294 - +1.8
6,140,689 + Pf6N2E2_5346 0.54 -0.2
6,140,689 + Pf6N2E2_5346 0.54 +0.3
6,140,689 + Pf6N2E2_5346 0.54 -0.9
6,140,690 - Pf6N2E2_5346 0.54 +2.1
6,140,721 - Pf6N2E2_5346 0.58 +1.0

Or see this region's nucleotide sequence