Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5176

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5175 and Pf6N2E2_5176 are separated by 2 nucleotidesPf6N2E2_5176 and Pf6N2E2_5177 are separated by 45 nucleotides Pf6N2E2_5175 - Acetolactate synthase large subunit (EC 2.2.1.6), at 5,963,258 to 5,964,991 _5175 Pf6N2E2_5176 - Acetolactate synthase small subunit (EC 2.2.1.6), at 5,964,994 to 5,965,485 _5176 Pf6N2E2_5177 - Ketol-acid reductoisomerase (EC 1.1.1.86), at 5,965,531 to 5,966,547 _5177 Position (kb) 5964 5965 5966Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5964.034 kb on + strand, within Pf6N2E2_5175at 5964.035 kb on - strand, within Pf6N2E2_5175at 5964.035 kb on - strand, within Pf6N2E2_5175at 5964.056 kb on + strand, within Pf6N2E2_5175at 5964.056 kb on + strand, within Pf6N2E2_5175at 5964.057 kb on - strand, within Pf6N2E2_5175at 5964.237 kb on + strand, within Pf6N2E2_5175at 5964.238 kb on - strand, within Pf6N2E2_5175at 5964.292 kb on + strand, within Pf6N2E2_5175at 5964.292 kb on + strand, within Pf6N2E2_5175at 5964.293 kb on - strand, within Pf6N2E2_5175at 5964.363 kb on - strand, within Pf6N2E2_5175at 5964.363 kb on - strand, within Pf6N2E2_5175at 5964.485 kb on + strand, within Pf6N2E2_5175at 5964.485 kb on + strand, within Pf6N2E2_5175at 5964.486 kb on - strand, within Pf6N2E2_5175at 5964.486 kb on - strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.489 kb on - strand, within Pf6N2E2_5175at 5964.489 kb on - strand, within Pf6N2E2_5175at 5964.489 kb on - strand, within Pf6N2E2_5175at 5964.489 kb on - strand, within Pf6N2E2_5175at 5964.662 kb on + strand, within Pf6N2E2_5175at 5964.663 kb on - strand, within Pf6N2E2_5175at 5964.737 kb on + strand, within Pf6N2E2_5175at 5964.738 kb on - strand, within Pf6N2E2_5175at 5964.761 kb on + strand, within Pf6N2E2_5175at 5964.761 kb on + strand, within Pf6N2E2_5175at 5964.761 kb on + strand, within Pf6N2E2_5175at 5964.761 kb on + strand, within Pf6N2E2_5175at 5964.761 kb on + strand, within Pf6N2E2_5175at 5964.762 kb on - strand, within Pf6N2E2_5175at 5964.762 kb on - strand, within Pf6N2E2_5175at 5964.803 kb on + strand, within Pf6N2E2_5175at 5964.961 kb on + strandat 5964.961 kb on + strandat 5964.985 kb on + strandat 5964.985 kb on + strandat 5964.985 kb on + strandat 5964.986 kb on - strandat 5964.989 kb on + strandat 5964.989 kb on + strandat 5964.989 kb on + strandat 5964.989 kb on + strandat 5964.989 kb on + strandat 5964.990 kb on - strandat 5964.990 kb on - strandat 5964.990 kb on - strandat 5964.990 kb on - strandat 5965.005 kb on + strandat 5965.005 kb on + strandat 5965.006 kb on - strandat 5965.006 kb on - strandat 5965.006 kb on - strandat 5965.006 kb on - strandat 5965.052 kb on + strand, within Pf6N2E2_5176at 5965.052 kb on + strand, within Pf6N2E2_5176at 5965.052 kb on + strand, within Pf6N2E2_5176at 5965.052 kb on + strand, within Pf6N2E2_5176at 5965.052 kb on + strand, within Pf6N2E2_5176at 5965.075 kb on + strand, within Pf6N2E2_5176at 5965.075 kb on + strand, within Pf6N2E2_5176at 5965.075 kb on + strand, within Pf6N2E2_5176at 5965.076 kb on - strand, within Pf6N2E2_5176at 5965.076 kb on - strand, within Pf6N2E2_5176at 5965.076 kb on - strand, within Pf6N2E2_5176at 5965.076 kb on - strand, within Pf6N2E2_5176at 5965.076 kb on - strand, within Pf6N2E2_5176at 5965.302 kb on + strand, within Pf6N2E2_5176at 5965.303 kb on - strand, within Pf6N2E2_5176at 5965.303 kb on - strand, within Pf6N2E2_5176at 5965.303 kb on - strand, within Pf6N2E2_5176at 5965.303 kb on - strand, within Pf6N2E2_5176at 5965.305 kb on + strand, within Pf6N2E2_5176at 5965.305 kb on + strand, within Pf6N2E2_5176at 5965.312 kb on - strand, within Pf6N2E2_5176at 5965.316 kb on - strand, within Pf6N2E2_5176at 5965.316 kb on - strand, within Pf6N2E2_5176at 5965.316 kb on - strand, within Pf6N2E2_5176at 5965.351 kb on + strand, within Pf6N2E2_5176at 5965.351 kb on + strand, within Pf6N2E2_5176at 5965.351 kb on + strand, within Pf6N2E2_5176at 5965.351 kb on + strand, within Pf6N2E2_5176at 5965.351 kb on + strand, within Pf6N2E2_5176at 5965.352 kb on - strand, within Pf6N2E2_5176at 5965.352 kb on - strand, within Pf6N2E2_5176at 5965.352 kb on - strand, within Pf6N2E2_5176at 5965.353 kb on + strand, within Pf6N2E2_5176at 5965.472 kb on + strandat 5965.472 kb on + strandat 5965.472 kb on + strandat 5965.472 kb on + strandat 5965.473 kb on - strandat 5965.473 kb on - strandat 5965.473 kb on - strandat 5965.483 kb on + strandat 5965.484 kb on - strandat 5965.484 kb on - strandat 5965.493 kb on + strandat 5965.543 kb on + strandat 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.868 kb on - strand, within Pf6N2E2_5177at 5965.988 kb on - strand, within Pf6N2E2_5177at 5965.988 kb on - strand, within Pf6N2E2_5177at 5965.988 kb on - strand, within Pf6N2E2_5177at 5966.030 kb on - strand, within Pf6N2E2_5177at 5966.055 kb on + strand, within Pf6N2E2_5177at 5966.182 kb on + strand, within Pf6N2E2_5177at 5966.200 kb on + strand, within Pf6N2E2_5177at 5966.200 kb on + strand, within Pf6N2E2_5177at 5966.200 kb on + strand, within Pf6N2E2_5177at 5966.200 kb on + strand, within Pf6N2E2_5177at 5966.201 kb on - strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.246 kb on - strand, within Pf6N2E2_5177at 5966.246 kb on - strand, within Pf6N2E2_5177at 5966.246 kb on - strand, within Pf6N2E2_5177at 5966.272 kb on + strand, within Pf6N2E2_5177at 5966.272 kb on + strand, within Pf6N2E2_5177at 5966.273 kb on - strand, within Pf6N2E2_5177at 5966.273 kb on - strand, within Pf6N2E2_5177at 5966.273 kb on - strand, within Pf6N2E2_5177at 5966.305 kb on + strand, within Pf6N2E2_5177at 5966.386 kb on + strand, within Pf6N2E2_5177

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,964,034 + Pf6N2E2_5175 0.45 -2.6
5,964,035 - Pf6N2E2_5175 0.45 -2.0
5,964,035 - Pf6N2E2_5175 0.45 -0.9
5,964,056 + Pf6N2E2_5175 0.46 -1.6
5,964,056 + Pf6N2E2_5175 0.46 -3.4
5,964,057 - Pf6N2E2_5175 0.46 -3.5
5,964,237 + Pf6N2E2_5175 0.56 -2.2
5,964,238 - Pf6N2E2_5175 0.57 -2.0
5,964,292 + Pf6N2E2_5175 0.60 -2.6
5,964,292 + Pf6N2E2_5175 0.60 -2.4
5,964,293 - Pf6N2E2_5175 0.60 -3.9
5,964,363 - Pf6N2E2_5175 0.64 -0.9
5,964,363 - Pf6N2E2_5175 0.64 -2.2
5,964,485 + Pf6N2E2_5175 0.71 -1.7
5,964,485 + Pf6N2E2_5175 0.71 -0.8
5,964,486 - Pf6N2E2_5175 0.71 -1.8
5,964,486 - Pf6N2E2_5175 0.71 -3.3
5,964,488 + Pf6N2E2_5175 0.71 -2.6
5,964,488 + Pf6N2E2_5175 0.71 -2.1
5,964,488 + Pf6N2E2_5175 0.71 -2.5
5,964,488 + Pf6N2E2_5175 0.71 -1.9
5,964,488 + Pf6N2E2_5175 0.71 -1.9
5,964,488 + Pf6N2E2_5175 0.71 -2.4
5,964,489 - Pf6N2E2_5175 0.71 -2.6
5,964,489 - Pf6N2E2_5175 0.71 -2.4
5,964,489 - Pf6N2E2_5175 0.71 -1.7
5,964,489 - Pf6N2E2_5175 0.71 -2.3
5,964,662 + Pf6N2E2_5175 0.81 -3.3
5,964,663 - Pf6N2E2_5175 0.81 -1.1
5,964,737 + Pf6N2E2_5175 0.85 -2.4
5,964,738 - Pf6N2E2_5175 0.85 -1.9
5,964,761 + Pf6N2E2_5175 0.87 -3.3
5,964,761 + Pf6N2E2_5175 0.87 -1.7
5,964,761 + Pf6N2E2_5175 0.87 -2.3
5,964,761 + Pf6N2E2_5175 0.87 -0.1
5,964,761 + Pf6N2E2_5175 0.87 +0.1
5,964,762 - Pf6N2E2_5175 0.87 -0.8
5,964,762 - Pf6N2E2_5175 0.87 -3.1
5,964,803 + Pf6N2E2_5175 0.89 -2.1
5,964,961 + -1.8
5,964,961 + -2.7
5,964,985 + +0.5
5,964,985 + -0.2
5,964,985 + +0.8
5,964,986 - -3.4
5,964,989 + +1.4
5,964,989 + -1.9
5,964,989 + -1.1
5,964,989 + -2.0
5,964,989 + -1.3
5,964,990 - -1.3
5,964,990 - -0.3
5,964,990 - -0.4
5,964,990 - -1.8
5,965,005 + -1.9
5,965,005 + -2.5
5,965,006 - -1.8
5,965,006 - +0.8
5,965,006 - -1.1
5,965,006 - -0.9
5,965,052 + Pf6N2E2_5176 0.12 -2.5
5,965,052 + Pf6N2E2_5176 0.12 -2.6
5,965,052 + Pf6N2E2_5176 0.12 -2.8
5,965,052 + Pf6N2E2_5176 0.12 -1.8
5,965,052 + Pf6N2E2_5176 0.12 -2.4
5,965,075 + Pf6N2E2_5176 0.16 -3.0
5,965,075 + Pf6N2E2_5176 0.16 -3.4
5,965,075 + Pf6N2E2_5176 0.16 -2.2
5,965,076 - Pf6N2E2_5176 0.17 -0.9
5,965,076 - Pf6N2E2_5176 0.17 +2.4
5,965,076 - Pf6N2E2_5176 0.17 -3.3
5,965,076 - Pf6N2E2_5176 0.17 -2.3
5,965,076 - Pf6N2E2_5176 0.17 -2.9
5,965,302 + Pf6N2E2_5176 0.63 -1.2
5,965,303 - Pf6N2E2_5176 0.63 -2.8
5,965,303 - Pf6N2E2_5176 0.63 -1.7
5,965,303 - Pf6N2E2_5176 0.63 -2.5
5,965,303 - Pf6N2E2_5176 0.63 -3.3
5,965,305 + Pf6N2E2_5176 0.63 -0.6
5,965,305 + Pf6N2E2_5176 0.63 -2.2
5,965,312 - Pf6N2E2_5176 0.65 -1.8
5,965,316 - Pf6N2E2_5176 0.65 -2.7
5,965,316 - Pf6N2E2_5176 0.65 -3.2
5,965,316 - Pf6N2E2_5176 0.65 -0.2
5,965,351 + Pf6N2E2_5176 0.73 -2.5
5,965,351 + Pf6N2E2_5176 0.73 -1.1
5,965,351 + Pf6N2E2_5176 0.73 -3.4
5,965,351 + Pf6N2E2_5176 0.73 -3.1
5,965,351 + Pf6N2E2_5176 0.73 -2.3
5,965,352 - Pf6N2E2_5176 0.73 -3.0
5,965,352 - Pf6N2E2_5176 0.73 -1.6
5,965,352 - Pf6N2E2_5176 0.73 -0.8
5,965,353 + Pf6N2E2_5176 0.73 +0.8
5,965,472 + +1.9
5,965,472 + +2.2
5,965,472 + +2.0
5,965,472 + +2.2
5,965,473 - -2.6
5,965,473 - -1.2
5,965,473 - -2.6
5,965,483 + +0.1
5,965,484 - -2.7
5,965,484 - -2.2
5,965,493 + -1.4
5,965,543 + -0.9
5,965,867 + Pf6N2E2_5177 0.33 +0.4
5,965,867 + Pf6N2E2_5177 0.33 -0.5
5,965,867 + Pf6N2E2_5177 0.33 -3.9
5,965,867 + Pf6N2E2_5177 0.33 -2.7
5,965,867 + Pf6N2E2_5177 0.33 -2.5
5,965,868 - Pf6N2E2_5177 0.33 -2.6
5,965,988 - Pf6N2E2_5177 0.45 -1.9
5,965,988 - Pf6N2E2_5177 0.45 -2.8
5,965,988 - Pf6N2E2_5177 0.45 -2.6
5,966,030 - Pf6N2E2_5177 0.49 -2.6
5,966,055 + Pf6N2E2_5177 0.52 -3.7
5,966,182 + Pf6N2E2_5177 0.64 -1.6
5,966,200 + Pf6N2E2_5177 0.66 -1.8
5,966,200 + Pf6N2E2_5177 0.66 -2.9
5,966,200 + Pf6N2E2_5177 0.66 -1.9
5,966,200 + Pf6N2E2_5177 0.66 -3.0
5,966,201 - Pf6N2E2_5177 0.66 -1.9
5,966,245 + Pf6N2E2_5177 0.70 -0.8
5,966,245 + Pf6N2E2_5177 0.70 -1.3
5,966,245 + Pf6N2E2_5177 0.70 -2.6
5,966,245 + Pf6N2E2_5177 0.70 -2.0
5,966,245 + Pf6N2E2_5177 0.70 -2.0
5,966,245 + Pf6N2E2_5177 0.70 -3.7
5,966,245 + Pf6N2E2_5177 0.70 -2.1
5,966,245 + Pf6N2E2_5177 0.70 -3.4
5,966,246 - Pf6N2E2_5177 0.70 -1.4
5,966,246 - Pf6N2E2_5177 0.70 -1.9
5,966,246 - Pf6N2E2_5177 0.70 -3.7
5,966,272 + Pf6N2E2_5177 0.73 -1.6
5,966,272 + Pf6N2E2_5177 0.73 -2.3
5,966,273 - Pf6N2E2_5177 0.73 -2.5
5,966,273 - Pf6N2E2_5177 0.73 -1.9
5,966,273 - Pf6N2E2_5177 0.73 -2.4
5,966,305 + Pf6N2E2_5177 0.76 -2.7
5,966,386 + Pf6N2E2_5177 0.84 -3.3

Or see this region's nucleotide sequence