Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5175

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5173 and Pf6N2E2_5174 are separated by 6 nucleotidesPf6N2E2_5174 and Pf6N2E2_5175 are separated by 398 nucleotidesPf6N2E2_5175 and Pf6N2E2_5176 are separated by 2 nucleotidesPf6N2E2_5176 and Pf6N2E2_5177 are separated by 45 nucleotides Pf6N2E2_5173 - Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C), at 5,962,107 to 5,962,436 _5173 Pf6N2E2_5174 - Glycosyltransferase, at 5,962,443 to 5,962,859 _5174 Pf6N2E2_5175 - Acetolactate synthase large subunit (EC 2.2.1.6), at 5,963,258 to 5,964,991 _5175 Pf6N2E2_5176 - Acetolactate synthase small subunit (EC 2.2.1.6), at 5,964,994 to 5,965,485 _5176 Pf6N2E2_5177 - Ketol-acid reductoisomerase (EC 1.1.1.86), at 5,965,531 to 5,966,547 _5177 Position (kb) 5963 5964 5965Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5962.293 kb on - strand, within Pf6N2E2_5173at 5962.356 kb on + strand, within Pf6N2E2_5173at 5962.356 kb on + strand, within Pf6N2E2_5173at 5962.357 kb on - strand, within Pf6N2E2_5173at 5962.357 kb on - strand, within Pf6N2E2_5173at 5962.357 kb on - strand, within Pf6N2E2_5173at 5962.357 kb on - strand, within Pf6N2E2_5173at 5962.542 kb on + strand, within Pf6N2E2_5174at 5962.543 kb on - strand, within Pf6N2E2_5174at 5962.602 kb on + strand, within Pf6N2E2_5174at 5962.603 kb on - strand, within Pf6N2E2_5174at 5962.603 kb on - strand, within Pf6N2E2_5174at 5962.795 kb on + strand, within Pf6N2E2_5174at 5962.916 kb on + strandat 5962.946 kb on + strandat 5962.947 kb on - strandat 5962.947 kb on - strandat 5962.964 kb on + strandat 5962.964 kb on + strandat 5962.964 kb on + strandat 5962.965 kb on - strandat 5963.015 kb on - strandat 5963.078 kb on + strandat 5963.079 kb on - strandat 5963.079 kb on - strandat 5963.079 kb on - strandat 5963.142 kb on + strandat 5963.142 kb on + strandat 5963.143 kb on - strandat 5963.165 kb on + strandat 5963.165 kb on + strandat 5963.165 kb on + strandat 5963.166 kb on - strandat 5963.203 kb on + strandat 5963.203 kb on + strandat 5963.203 kb on + strandat 5963.203 kb on + strandat 5963.203 kb on + strandat 5963.203 kb on + strandat 5963.203 kb on + strandat 5963.203 kb on + strandat 5963.204 kb on - strandat 5963.209 kb on + strandat 5963.209 kb on + strandat 5963.209 kb on + strandat 5963.209 kb on + strandat 5963.209 kb on + strandat 5963.209 kb on + strandat 5963.209 kb on + strandat 5963.209 kb on + strandat 5963.210 kb on - strandat 5963.210 kb on - strandat 5963.212 kb on + strandat 5963.212 kb on + strandat 5963.212 kb on + strandat 5963.212 kb on + strandat 5963.213 kb on - strandat 5963.213 kb on - strandat 5963.213 kb on - strandat 5963.213 kb on - strandat 5963.278 kb on - strandat 5963.278 kb on - strandat 5963.327 kb on + strandat 5963.327 kb on + strandat 5963.327 kb on + strandat 5963.327 kb on + strandat 5963.327 kb on + strandat 5963.327 kb on + strandat 5963.327 kb on + strandat 5963.328 kb on - strandat 5963.328 kb on - strandat 5963.328 kb on - strandat 5963.328 kb on - strandat 5963.329 kb on + strandat 5963.329 kb on + strandat 5963.329 kb on + strandat 5963.329 kb on + strandat 5963.330 kb on - strandat 5963.333 kb on + strandat 5963.366 kb on + strandat 5963.366 kb on + strandat 5963.366 kb on + strandat 5963.367 kb on - strandat 5963.367 kb on - strandat 5963.367 kb on - strandat 5963.367 kb on - strandat 5963.367 kb on - strandat 5963.434 kb on + strand, within Pf6N2E2_5175at 5963.434 kb on + strand, within Pf6N2E2_5175at 5963.434 kb on + strand, within Pf6N2E2_5175at 5963.478 kb on + strand, within Pf6N2E2_5175at 5963.479 kb on - strand, within Pf6N2E2_5175at 5963.534 kb on + strand, within Pf6N2E2_5175at 5963.535 kb on - strand, within Pf6N2E2_5175at 5963.535 kb on - strand, within Pf6N2E2_5175at 5963.535 kb on - strand, within Pf6N2E2_5175at 5963.705 kb on + strand, within Pf6N2E2_5175at 5963.706 kb on - strand, within Pf6N2E2_5175at 5963.706 kb on - strand, within Pf6N2E2_5175at 5963.706 kb on - strand, within Pf6N2E2_5175at 5963.782 kb on - strand, within Pf6N2E2_5175at 5963.786 kb on + strand, within Pf6N2E2_5175at 5963.786 kb on + strand, within Pf6N2E2_5175at 5963.786 kb on + strand, within Pf6N2E2_5175at 5963.787 kb on - strand, within Pf6N2E2_5175at 5963.787 kb on - strand, within Pf6N2E2_5175at 5963.787 kb on - strand, within Pf6N2E2_5175at 5963.787 kb on - strand, within Pf6N2E2_5175at 5963.819 kb on + strand, within Pf6N2E2_5175at 5963.819 kb on + strand, within Pf6N2E2_5175at 5963.820 kb on - strand, within Pf6N2E2_5175at 5963.900 kb on + strand, within Pf6N2E2_5175at 5963.900 kb on + strand, within Pf6N2E2_5175at 5963.900 kb on + strand, within Pf6N2E2_5175at 5963.983 kb on + strand, within Pf6N2E2_5175at 5963.984 kb on - strand, within Pf6N2E2_5175at 5964.034 kb on + strand, within Pf6N2E2_5175at 5964.035 kb on - strand, within Pf6N2E2_5175at 5964.035 kb on - strand, within Pf6N2E2_5175at 5964.056 kb on + strand, within Pf6N2E2_5175at 5964.056 kb on + strand, within Pf6N2E2_5175at 5964.057 kb on - strand, within Pf6N2E2_5175at 5964.237 kb on + strand, within Pf6N2E2_5175at 5964.238 kb on - strand, within Pf6N2E2_5175at 5964.292 kb on + strand, within Pf6N2E2_5175at 5964.292 kb on + strand, within Pf6N2E2_5175at 5964.293 kb on - strand, within Pf6N2E2_5175at 5964.363 kb on - strand, within Pf6N2E2_5175at 5964.363 kb on - strand, within Pf6N2E2_5175at 5964.485 kb on + strand, within Pf6N2E2_5175at 5964.485 kb on + strand, within Pf6N2E2_5175at 5964.486 kb on - strand, within Pf6N2E2_5175at 5964.486 kb on - strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.488 kb on + strand, within Pf6N2E2_5175at 5964.489 kb on - strand, within Pf6N2E2_5175at 5964.489 kb on - strand, within Pf6N2E2_5175at 5964.489 kb on - strand, within Pf6N2E2_5175at 5964.489 kb on - strand, within Pf6N2E2_5175at 5964.662 kb on + strand, within Pf6N2E2_5175at 5964.663 kb on - strand, within Pf6N2E2_5175at 5964.737 kb on + strand, within Pf6N2E2_5175at 5964.738 kb on - strand, within Pf6N2E2_5175at 5964.761 kb on + strand, within Pf6N2E2_5175at 5964.761 kb on + strand, within Pf6N2E2_5175at 5964.761 kb on + strand, within Pf6N2E2_5175at 5964.761 kb on + strand, within Pf6N2E2_5175at 5964.761 kb on + strand, within Pf6N2E2_5175at 5964.762 kb on - strand, within Pf6N2E2_5175at 5964.762 kb on - strand, within Pf6N2E2_5175at 5964.803 kb on + strand, within Pf6N2E2_5175at 5964.961 kb on + strandat 5964.961 kb on + strandat 5964.985 kb on + strandat 5964.985 kb on + strandat 5964.985 kb on + strandat 5964.986 kb on - strandat 5964.989 kb on + strandat 5964.989 kb on + strandat 5964.989 kb on + strandat 5964.989 kb on + strandat 5964.989 kb on + strandat 5964.990 kb on - strandat 5964.990 kb on - strandat 5964.990 kb on - strandat 5964.990 kb on - strandat 5965.005 kb on + strandat 5965.005 kb on + strandat 5965.006 kb on - strandat 5965.006 kb on - strandat 5965.006 kb on - strandat 5965.006 kb on - strandat 5965.052 kb on + strand, within Pf6N2E2_5176at 5965.052 kb on + strand, within Pf6N2E2_5176at 5965.052 kb on + strand, within Pf6N2E2_5176at 5965.052 kb on + strand, within Pf6N2E2_5176at 5965.052 kb on + strand, within Pf6N2E2_5176at 5965.075 kb on + strand, within Pf6N2E2_5176at 5965.075 kb on + strand, within Pf6N2E2_5176at 5965.075 kb on + strand, within Pf6N2E2_5176at 5965.076 kb on - strand, within Pf6N2E2_5176at 5965.076 kb on - strand, within Pf6N2E2_5176at 5965.076 kb on - strand, within Pf6N2E2_5176at 5965.076 kb on - strand, within Pf6N2E2_5176at 5965.076 kb on - strand, within Pf6N2E2_5176at 5965.302 kb on + strand, within Pf6N2E2_5176at 5965.303 kb on - strand, within Pf6N2E2_5176at 5965.303 kb on - strand, within Pf6N2E2_5176at 5965.303 kb on - strand, within Pf6N2E2_5176at 5965.303 kb on - strand, within Pf6N2E2_5176at 5965.305 kb on + strand, within Pf6N2E2_5176at 5965.305 kb on + strand, within Pf6N2E2_5176at 5965.312 kb on - strand, within Pf6N2E2_5176at 5965.316 kb on - strand, within Pf6N2E2_5176at 5965.316 kb on - strand, within Pf6N2E2_5176at 5965.316 kb on - strand, within Pf6N2E2_5176at 5965.351 kb on + strand, within Pf6N2E2_5176at 5965.351 kb on + strand, within Pf6N2E2_5176at 5965.351 kb on + strand, within Pf6N2E2_5176at 5965.351 kb on + strand, within Pf6N2E2_5176at 5965.351 kb on + strand, within Pf6N2E2_5176at 5965.352 kb on - strand, within Pf6N2E2_5176at 5965.352 kb on - strand, within Pf6N2E2_5176at 5965.352 kb on - strand, within Pf6N2E2_5176at 5965.353 kb on + strand, within Pf6N2E2_5176at 5965.472 kb on + strandat 5965.472 kb on + strandat 5965.472 kb on + strandat 5965.472 kb on + strandat 5965.473 kb on - strandat 5965.473 kb on - strandat 5965.473 kb on - strandat 5965.483 kb on + strandat 5965.484 kb on - strandat 5965.484 kb on - strandat 5965.493 kb on + strandat 5965.543 kb on + strandat 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.868 kb on - strand, within Pf6N2E2_5177at 5965.988 kb on - strand, within Pf6N2E2_5177at 5965.988 kb on - strand, within Pf6N2E2_5177at 5965.988 kb on - strand, within Pf6N2E2_5177

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,962,293 - Pf6N2E2_5173 0.56 -0.2
5,962,356 + Pf6N2E2_5173 0.75 +0.4
5,962,356 + Pf6N2E2_5173 0.75 +0.4
5,962,357 - Pf6N2E2_5173 0.76 -0.6
5,962,357 - Pf6N2E2_5173 0.76 +0.5
5,962,357 - Pf6N2E2_5173 0.76 +0.7
5,962,357 - Pf6N2E2_5173 0.76 +0.6
5,962,542 + Pf6N2E2_5174 0.24 -0.3
5,962,543 - Pf6N2E2_5174 0.24 -0.6
5,962,602 + Pf6N2E2_5174 0.38 -0.5
5,962,603 - Pf6N2E2_5174 0.38 +1.4
5,962,603 - Pf6N2E2_5174 0.38 +1.2
5,962,795 + Pf6N2E2_5174 0.84 +0.3
5,962,916 + -2.5
5,962,946 + +0.1
5,962,947 - -2.9
5,962,947 - -2.8
5,962,964 + +0.8
5,962,964 + -1.4
5,962,964 + -0.9
5,962,965 - -2.6
5,963,015 - -2.9
5,963,078 + +1.2
5,963,079 - -3.1
5,963,079 - -1.9
5,963,079 - -0.9
5,963,142 + +0.8
5,963,142 + -0.0
5,963,143 - -2.1
5,963,165 + -1.0
5,963,165 + +0.4
5,963,165 + +0.7
5,963,166 - -0.8
5,963,203 + -1.9
5,963,203 + -0.9
5,963,203 + -0.3
5,963,203 + -0.4
5,963,203 + +0.1
5,963,203 + -1.0
5,963,203 + -0.0
5,963,203 + -0.3
5,963,204 - -2.0
5,963,209 + -0.3
5,963,209 + -0.2
5,963,209 + -0.6
5,963,209 + -0.3
5,963,209 + -0.3
5,963,209 + -2.8
5,963,209 + +0.2
5,963,209 + +0.1
5,963,210 - -2.9
5,963,210 - -2.2
5,963,212 + +1.0
5,963,212 + +0.4
5,963,212 + -1.2
5,963,212 + +0.9
5,963,213 - -2.3
5,963,213 - -3.1
5,963,213 - -2.3
5,963,213 - -0.9
5,963,278 - -0.6
5,963,278 - -1.9
5,963,327 + -2.3
5,963,327 + -2.3
5,963,327 + -2.7
5,963,327 + -2.8
5,963,327 + -1.9
5,963,327 + -3.1
5,963,327 + -0.1
5,963,328 - -2.5
5,963,328 - -2.2
5,963,328 - -0.2
5,963,328 - -0.9
5,963,329 + -2.4
5,963,329 + -2.0
5,963,329 + -2.1
5,963,329 + -1.6
5,963,330 - -3.5
5,963,333 + -1.4
5,963,366 + -2.7
5,963,366 + -2.5
5,963,366 + -1.9
5,963,367 - -0.9
5,963,367 - -1.1
5,963,367 - -2.3
5,963,367 - -2.3
5,963,367 - -2.1
5,963,434 + Pf6N2E2_5175 0.10 -2.0
5,963,434 + Pf6N2E2_5175 0.10 -1.9
5,963,434 + Pf6N2E2_5175 0.10 -3.0
5,963,478 + Pf6N2E2_5175 0.13 -2.7
5,963,479 - Pf6N2E2_5175 0.13 -2.5
5,963,534 + Pf6N2E2_5175 0.16 -2.7
5,963,535 - Pf6N2E2_5175 0.16 -3.7
5,963,535 - Pf6N2E2_5175 0.16 -1.1
5,963,535 - Pf6N2E2_5175 0.16 -3.6
5,963,705 + Pf6N2E2_5175 0.26 -2.8
5,963,706 - Pf6N2E2_5175 0.26 -1.0
5,963,706 - Pf6N2E2_5175 0.26 -1.7
5,963,706 - Pf6N2E2_5175 0.26 -2.8
5,963,782 - Pf6N2E2_5175 0.30 -0.9
5,963,786 + Pf6N2E2_5175 0.30 -2.8
5,963,786 + Pf6N2E2_5175 0.30 -1.4
5,963,786 + Pf6N2E2_5175 0.30 -1.8
5,963,787 - Pf6N2E2_5175 0.31 -1.6
5,963,787 - Pf6N2E2_5175 0.31 -2.6
5,963,787 - Pf6N2E2_5175 0.31 -3.0
5,963,787 - Pf6N2E2_5175 0.31 -3.0
5,963,819 + Pf6N2E2_5175 0.32 -2.9
5,963,819 + Pf6N2E2_5175 0.32 -2.7
5,963,820 - Pf6N2E2_5175 0.32 -1.4
5,963,900 + Pf6N2E2_5175 0.37 -2.4
5,963,900 + Pf6N2E2_5175 0.37 -1.6
5,963,900 + Pf6N2E2_5175 0.37 -3.1
5,963,983 + Pf6N2E2_5175 0.42 -0.6
5,963,984 - Pf6N2E2_5175 0.42 -1.3
5,964,034 + Pf6N2E2_5175 0.45 -2.6
5,964,035 - Pf6N2E2_5175 0.45 -2.0
5,964,035 - Pf6N2E2_5175 0.45 -0.9
5,964,056 + Pf6N2E2_5175 0.46 -1.6
5,964,056 + Pf6N2E2_5175 0.46 -3.4
5,964,057 - Pf6N2E2_5175 0.46 -3.5
5,964,237 + Pf6N2E2_5175 0.56 -2.2
5,964,238 - Pf6N2E2_5175 0.57 -2.0
5,964,292 + Pf6N2E2_5175 0.60 -2.6
5,964,292 + Pf6N2E2_5175 0.60 -2.4
5,964,293 - Pf6N2E2_5175 0.60 -3.9
5,964,363 - Pf6N2E2_5175 0.64 -0.9
5,964,363 - Pf6N2E2_5175 0.64 -2.2
5,964,485 + Pf6N2E2_5175 0.71 -1.7
5,964,485 + Pf6N2E2_5175 0.71 -0.8
5,964,486 - Pf6N2E2_5175 0.71 -1.8
5,964,486 - Pf6N2E2_5175 0.71 -3.3
5,964,488 + Pf6N2E2_5175 0.71 -2.6
5,964,488 + Pf6N2E2_5175 0.71 -2.1
5,964,488 + Pf6N2E2_5175 0.71 -2.5
5,964,488 + Pf6N2E2_5175 0.71 -1.9
5,964,488 + Pf6N2E2_5175 0.71 -1.9
5,964,488 + Pf6N2E2_5175 0.71 -2.4
5,964,489 - Pf6N2E2_5175 0.71 -2.6
5,964,489 - Pf6N2E2_5175 0.71 -2.4
5,964,489 - Pf6N2E2_5175 0.71 -1.7
5,964,489 - Pf6N2E2_5175 0.71 -2.3
5,964,662 + Pf6N2E2_5175 0.81 -3.3
5,964,663 - Pf6N2E2_5175 0.81 -1.1
5,964,737 + Pf6N2E2_5175 0.85 -2.4
5,964,738 - Pf6N2E2_5175 0.85 -1.9
5,964,761 + Pf6N2E2_5175 0.87 -3.3
5,964,761 + Pf6N2E2_5175 0.87 -1.7
5,964,761 + Pf6N2E2_5175 0.87 -2.3
5,964,761 + Pf6N2E2_5175 0.87 -0.1
5,964,761 + Pf6N2E2_5175 0.87 +0.1
5,964,762 - Pf6N2E2_5175 0.87 -0.8
5,964,762 - Pf6N2E2_5175 0.87 -3.1
5,964,803 + Pf6N2E2_5175 0.89 -2.1
5,964,961 + -1.8
5,964,961 + -2.7
5,964,985 + +0.5
5,964,985 + -0.2
5,964,985 + +0.8
5,964,986 - -3.4
5,964,989 + +1.4
5,964,989 + -1.9
5,964,989 + -1.1
5,964,989 + -2.0
5,964,989 + -1.3
5,964,990 - -1.3
5,964,990 - -0.3
5,964,990 - -0.4
5,964,990 - -1.8
5,965,005 + -1.9
5,965,005 + -2.5
5,965,006 - -1.8
5,965,006 - +0.8
5,965,006 - -1.1
5,965,006 - -0.9
5,965,052 + Pf6N2E2_5176 0.12 -2.5
5,965,052 + Pf6N2E2_5176 0.12 -2.6
5,965,052 + Pf6N2E2_5176 0.12 -2.8
5,965,052 + Pf6N2E2_5176 0.12 -1.8
5,965,052 + Pf6N2E2_5176 0.12 -2.4
5,965,075 + Pf6N2E2_5176 0.16 -3.0
5,965,075 + Pf6N2E2_5176 0.16 -3.4
5,965,075 + Pf6N2E2_5176 0.16 -2.2
5,965,076 - Pf6N2E2_5176 0.17 -0.9
5,965,076 - Pf6N2E2_5176 0.17 +2.4
5,965,076 - Pf6N2E2_5176 0.17 -3.3
5,965,076 - Pf6N2E2_5176 0.17 -2.3
5,965,076 - Pf6N2E2_5176 0.17 -2.9
5,965,302 + Pf6N2E2_5176 0.63 -1.2
5,965,303 - Pf6N2E2_5176 0.63 -2.8
5,965,303 - Pf6N2E2_5176 0.63 -1.7
5,965,303 - Pf6N2E2_5176 0.63 -2.5
5,965,303 - Pf6N2E2_5176 0.63 -3.3
5,965,305 + Pf6N2E2_5176 0.63 -0.6
5,965,305 + Pf6N2E2_5176 0.63 -2.2
5,965,312 - Pf6N2E2_5176 0.65 -1.8
5,965,316 - Pf6N2E2_5176 0.65 -2.7
5,965,316 - Pf6N2E2_5176 0.65 -3.2
5,965,316 - Pf6N2E2_5176 0.65 -0.2
5,965,351 + Pf6N2E2_5176 0.73 -2.5
5,965,351 + Pf6N2E2_5176 0.73 -1.1
5,965,351 + Pf6N2E2_5176 0.73 -3.4
5,965,351 + Pf6N2E2_5176 0.73 -3.1
5,965,351 + Pf6N2E2_5176 0.73 -2.3
5,965,352 - Pf6N2E2_5176 0.73 -3.0
5,965,352 - Pf6N2E2_5176 0.73 -1.6
5,965,352 - Pf6N2E2_5176 0.73 -0.8
5,965,353 + Pf6N2E2_5176 0.73 +0.8
5,965,472 + +1.9
5,965,472 + +2.2
5,965,472 + +2.0
5,965,472 + +2.2
5,965,473 - -2.6
5,965,473 - -1.2
5,965,473 - -2.6
5,965,483 + +0.1
5,965,484 - -2.7
5,965,484 - -2.2
5,965,493 + -1.4
5,965,543 + -0.9
5,965,867 + Pf6N2E2_5177 0.33 +0.4
5,965,867 + Pf6N2E2_5177 0.33 -0.5
5,965,867 + Pf6N2E2_5177 0.33 -3.9
5,965,867 + Pf6N2E2_5177 0.33 -2.7
5,965,867 + Pf6N2E2_5177 0.33 -2.5
5,965,868 - Pf6N2E2_5177 0.33 -2.6
5,965,988 - Pf6N2E2_5177 0.45 -1.9
5,965,988 - Pf6N2E2_5177 0.45 -2.8
5,965,988 - Pf6N2E2_5177 0.45 -2.6

Or see this region's nucleotide sequence