Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5173 and Pf6N2E2_5174 are separated by 6 nucleotides Pf6N2E2_5174 and Pf6N2E2_5175 are separated by 398 nucleotides Pf6N2E2_5175 and Pf6N2E2_5176 are separated by 2 nucleotides Pf6N2E2_5176 and Pf6N2E2_5177 are separated by 45 nucleotides
Pf6N2E2_5173 - Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C), at 5,962,107 to 5,962,436
_5173
Pf6N2E2_5174 - Glycosyltransferase, at 5,962,443 to 5,962,859
_5174
Pf6N2E2_5175 - Acetolactate synthase large subunit (EC 2.2.1.6), at 5,963,258 to 5,964,991
_5175
Pf6N2E2_5176 - Acetolactate synthase small subunit (EC 2.2.1.6), at 5,964,994 to 5,965,485
_5176
Pf6N2E2_5177 - Ketol-acid reductoisomerase (EC 1.1.1.86), at 5,965,531 to 5,966,547
_5177
Position (kb)
5963
5964
5965 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5962.293 kb on - strand, within Pf6N2E2_5173 at 5962.356 kb on + strand, within Pf6N2E2_5173 at 5962.356 kb on + strand, within Pf6N2E2_5173 at 5962.357 kb on - strand, within Pf6N2E2_5173 at 5962.357 kb on - strand, within Pf6N2E2_5173 at 5962.357 kb on - strand, within Pf6N2E2_5173 at 5962.357 kb on - strand, within Pf6N2E2_5173 at 5962.542 kb on + strand, within Pf6N2E2_5174 at 5962.543 kb on - strand, within Pf6N2E2_5174 at 5962.602 kb on + strand, within Pf6N2E2_5174 at 5962.603 kb on - strand, within Pf6N2E2_5174 at 5962.603 kb on - strand, within Pf6N2E2_5174 at 5962.795 kb on + strand, within Pf6N2E2_5174 at 5962.916 kb on + strand at 5962.946 kb on + strand at 5962.947 kb on - strand at 5962.947 kb on - strand at 5962.964 kb on + strand at 5962.964 kb on + strand at 5962.964 kb on + strand at 5962.965 kb on - strand at 5963.015 kb on - strand at 5963.078 kb on + strand at 5963.079 kb on - strand at 5963.079 kb on - strand at 5963.079 kb on - strand at 5963.142 kb on + strand at 5963.142 kb on + strand at 5963.143 kb on - strand at 5963.165 kb on + strand at 5963.165 kb on + strand at 5963.165 kb on + strand at 5963.166 kb on - strand at 5963.203 kb on + strand at 5963.203 kb on + strand at 5963.203 kb on + strand at 5963.203 kb on + strand at 5963.203 kb on + strand at 5963.203 kb on + strand at 5963.203 kb on + strand at 5963.203 kb on + strand at 5963.204 kb on - strand at 5963.209 kb on + strand at 5963.209 kb on + strand at 5963.209 kb on + strand at 5963.209 kb on + strand at 5963.209 kb on + strand at 5963.209 kb on + strand at 5963.209 kb on + strand at 5963.209 kb on + strand at 5963.210 kb on - strand at 5963.210 kb on - strand at 5963.212 kb on + strand at 5963.212 kb on + strand at 5963.212 kb on + strand at 5963.212 kb on + strand at 5963.213 kb on - strand at 5963.213 kb on - strand at 5963.213 kb on - strand at 5963.213 kb on - strand at 5963.278 kb on - strand at 5963.278 kb on - strand at 5963.327 kb on + strand at 5963.327 kb on + strand at 5963.327 kb on + strand at 5963.327 kb on + strand at 5963.327 kb on + strand at 5963.327 kb on + strand at 5963.327 kb on + strand at 5963.328 kb on - strand at 5963.328 kb on - strand at 5963.328 kb on - strand at 5963.328 kb on - strand at 5963.329 kb on + strand at 5963.329 kb on + strand at 5963.329 kb on + strand at 5963.329 kb on + strand at 5963.330 kb on - strand at 5963.333 kb on + strand at 5963.366 kb on + strand at 5963.366 kb on + strand at 5963.366 kb on + strand at 5963.367 kb on - strand at 5963.367 kb on - strand at 5963.367 kb on - strand at 5963.367 kb on - strand at 5963.367 kb on - strand at 5963.434 kb on + strand, within Pf6N2E2_5175 at 5963.434 kb on + strand, within Pf6N2E2_5175 at 5963.434 kb on + strand, within Pf6N2E2_5175 at 5963.478 kb on + strand, within Pf6N2E2_5175 at 5963.479 kb on - strand, within Pf6N2E2_5175 at 5963.534 kb on + strand, within Pf6N2E2_5175 at 5963.535 kb on - strand, within Pf6N2E2_5175 at 5963.535 kb on - strand, within Pf6N2E2_5175 at 5963.535 kb on - strand, within Pf6N2E2_5175 at 5963.705 kb on + strand, within Pf6N2E2_5175 at 5963.706 kb on - strand, within Pf6N2E2_5175 at 5963.706 kb on - strand, within Pf6N2E2_5175 at 5963.706 kb on - strand, within Pf6N2E2_5175 at 5963.782 kb on - strand, within Pf6N2E2_5175 at 5963.786 kb on + strand, within Pf6N2E2_5175 at 5963.786 kb on + strand, within Pf6N2E2_5175 at 5963.786 kb on + strand, within Pf6N2E2_5175 at 5963.787 kb on - strand, within Pf6N2E2_5175 at 5963.787 kb on - strand, within Pf6N2E2_5175 at 5963.787 kb on - strand, within Pf6N2E2_5175 at 5963.787 kb on - strand, within Pf6N2E2_5175 at 5963.819 kb on + strand, within Pf6N2E2_5175 at 5963.819 kb on + strand, within Pf6N2E2_5175 at 5963.820 kb on - strand, within Pf6N2E2_5175 at 5963.900 kb on + strand, within Pf6N2E2_5175 at 5963.900 kb on + strand, within Pf6N2E2_5175 at 5963.900 kb on + strand, within Pf6N2E2_5175 at 5963.983 kb on + strand, within Pf6N2E2_5175 at 5963.984 kb on - strand, within Pf6N2E2_5175 at 5964.034 kb on + strand, within Pf6N2E2_5175 at 5964.035 kb on - strand, within Pf6N2E2_5175 at 5964.035 kb on - strand, within Pf6N2E2_5175 at 5964.056 kb on + strand, within Pf6N2E2_5175 at 5964.056 kb on + strand, within Pf6N2E2_5175 at 5964.057 kb on - strand, within Pf6N2E2_5175 at 5964.237 kb on + strand, within Pf6N2E2_5175 at 5964.238 kb on - strand, within Pf6N2E2_5175 at 5964.292 kb on + strand, within Pf6N2E2_5175 at 5964.292 kb on + strand, within Pf6N2E2_5175 at 5964.293 kb on - strand, within Pf6N2E2_5175 at 5964.363 kb on - strand, within Pf6N2E2_5175 at 5964.363 kb on - strand, within Pf6N2E2_5175 at 5964.485 kb on + strand, within Pf6N2E2_5175 at 5964.485 kb on + strand, within Pf6N2E2_5175 at 5964.486 kb on - strand, within Pf6N2E2_5175 at 5964.486 kb on - strand, within Pf6N2E2_5175 at 5964.488 kb on + strand, within Pf6N2E2_5175 at 5964.488 kb on + strand, within Pf6N2E2_5175 at 5964.488 kb on + strand, within Pf6N2E2_5175 at 5964.488 kb on + strand, within Pf6N2E2_5175 at 5964.488 kb on + strand, within Pf6N2E2_5175 at 5964.488 kb on + strand, within Pf6N2E2_5175 at 5964.489 kb on - strand, within Pf6N2E2_5175 at 5964.489 kb on - strand, within Pf6N2E2_5175 at 5964.489 kb on - strand, within Pf6N2E2_5175 at 5964.489 kb on - strand, within Pf6N2E2_5175 at 5964.662 kb on + strand, within Pf6N2E2_5175 at 5964.663 kb on - strand, within Pf6N2E2_5175 at 5964.737 kb on + strand, within Pf6N2E2_5175 at 5964.738 kb on - strand, within Pf6N2E2_5175 at 5964.761 kb on + strand, within Pf6N2E2_5175 at 5964.761 kb on + strand, within Pf6N2E2_5175 at 5964.761 kb on + strand, within Pf6N2E2_5175 at 5964.761 kb on + strand, within Pf6N2E2_5175 at 5964.761 kb on + strand, within Pf6N2E2_5175 at 5964.762 kb on - strand, within Pf6N2E2_5175 at 5964.762 kb on - strand, within Pf6N2E2_5175 at 5964.803 kb on + strand, within Pf6N2E2_5175 at 5964.961 kb on + strand at 5964.961 kb on + strand at 5964.985 kb on + strand at 5964.985 kb on + strand at 5964.985 kb on + strand at 5964.986 kb on - strand at 5964.989 kb on + strand at 5964.989 kb on + strand at 5964.989 kb on + strand at 5964.989 kb on + strand at 5964.989 kb on + strand at 5964.990 kb on - strand at 5964.990 kb on - strand at 5964.990 kb on - strand at 5964.990 kb on - strand at 5965.005 kb on + strand at 5965.005 kb on + strand at 5965.006 kb on - strand at 5965.006 kb on - strand at 5965.006 kb on - strand at 5965.006 kb on - strand at 5965.052 kb on + strand, within Pf6N2E2_5176 at 5965.052 kb on + strand, within Pf6N2E2_5176 at 5965.052 kb on + strand, within Pf6N2E2_5176 at 5965.052 kb on + strand, within Pf6N2E2_5176 at 5965.052 kb on + strand, within Pf6N2E2_5176 at 5965.075 kb on + strand, within Pf6N2E2_5176 at 5965.075 kb on + strand, within Pf6N2E2_5176 at 5965.075 kb on + strand, within Pf6N2E2_5176 at 5965.076 kb on - strand, within Pf6N2E2_5176 at 5965.076 kb on - strand, within Pf6N2E2_5176 at 5965.076 kb on - strand, within Pf6N2E2_5176 at 5965.076 kb on - strand, within Pf6N2E2_5176 at 5965.076 kb on - strand, within Pf6N2E2_5176 at 5965.302 kb on + strand, within Pf6N2E2_5176 at 5965.303 kb on - strand, within Pf6N2E2_5176 at 5965.303 kb on - strand, within Pf6N2E2_5176 at 5965.303 kb on - strand, within Pf6N2E2_5176 at 5965.303 kb on - strand, within Pf6N2E2_5176 at 5965.305 kb on + strand, within Pf6N2E2_5176 at 5965.305 kb on + strand, within Pf6N2E2_5176 at 5965.312 kb on - strand, within Pf6N2E2_5176 at 5965.316 kb on - strand, within Pf6N2E2_5176 at 5965.316 kb on - strand, within Pf6N2E2_5176 at 5965.316 kb on - strand, within Pf6N2E2_5176 at 5965.351 kb on + strand, within Pf6N2E2_5176 at 5965.351 kb on + strand, within Pf6N2E2_5176 at 5965.351 kb on + strand, within Pf6N2E2_5176 at 5965.351 kb on + strand, within Pf6N2E2_5176 at 5965.351 kb on + strand, within Pf6N2E2_5176 at 5965.352 kb on - strand, within Pf6N2E2_5176 at 5965.352 kb on - strand, within Pf6N2E2_5176 at 5965.352 kb on - strand, within Pf6N2E2_5176 at 5965.353 kb on + strand, within Pf6N2E2_5176 at 5965.472 kb on + strand at 5965.472 kb on + strand at 5965.472 kb on + strand at 5965.472 kb on + strand at 5965.473 kb on - strand at 5965.473 kb on - strand at 5965.473 kb on - strand at 5965.483 kb on + strand at 5965.484 kb on - strand at 5965.484 kb on - strand at 5965.493 kb on + strand at 5965.543 kb on + strand at 5965.867 kb on + strand, within Pf6N2E2_5177 at 5965.867 kb on + strand, within Pf6N2E2_5177 at 5965.867 kb on + strand, within Pf6N2E2_5177 at 5965.867 kb on + strand, within Pf6N2E2_5177 at 5965.867 kb on + strand, within Pf6N2E2_5177 at 5965.868 kb on - strand, within Pf6N2E2_5177 at 5965.988 kb on - strand, within Pf6N2E2_5177 at 5965.988 kb on - strand, within Pf6N2E2_5177 at 5965.988 kb on - strand, within Pf6N2E2_5177
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,962,293 - Pf6N2E2_5173 0.56 -0.2 5,962,356 + Pf6N2E2_5173 0.75 +0.4 5,962,356 + Pf6N2E2_5173 0.75 +0.4 5,962,357 - Pf6N2E2_5173 0.76 -0.6 5,962,357 - Pf6N2E2_5173 0.76 +0.5 5,962,357 - Pf6N2E2_5173 0.76 +0.7 5,962,357 - Pf6N2E2_5173 0.76 +0.6 5,962,542 + Pf6N2E2_5174 0.24 -0.3 5,962,543 - Pf6N2E2_5174 0.24 -0.6 5,962,602 + Pf6N2E2_5174 0.38 -0.5 5,962,603 - Pf6N2E2_5174 0.38 +1.4 5,962,603 - Pf6N2E2_5174 0.38 +1.2 5,962,795 + Pf6N2E2_5174 0.84 +0.3 5,962,916 + -2.5 5,962,946 + +0.1 5,962,947 - -2.9 5,962,947 - -2.8 5,962,964 + +0.8 5,962,964 + -1.4 5,962,964 + -0.9 5,962,965 - -2.6 5,963,015 - -2.9 5,963,078 + +1.2 5,963,079 - -3.1 5,963,079 - -1.9 5,963,079 - -0.9 5,963,142 + +0.8 5,963,142 + -0.0 5,963,143 - -2.1 5,963,165 + -1.0 5,963,165 + +0.4 5,963,165 + +0.7 5,963,166 - -0.8 5,963,203 + -1.9 5,963,203 + -0.9 5,963,203 + -0.3 5,963,203 + -0.4 5,963,203 + +0.1 5,963,203 + -1.0 5,963,203 + -0.0 5,963,203 + -0.3 5,963,204 - -2.0 5,963,209 + -0.3 5,963,209 + -0.2 5,963,209 + -0.6 5,963,209 + -0.3 5,963,209 + -0.3 5,963,209 + -2.8 5,963,209 + +0.2 5,963,209 + +0.1 5,963,210 - -2.9 5,963,210 - -2.2 5,963,212 + +1.0 5,963,212 + +0.4 5,963,212 + -1.2 5,963,212 + +0.9 5,963,213 - -2.3 5,963,213 - -3.1 5,963,213 - -2.3 5,963,213 - -0.9 5,963,278 - -0.6 5,963,278 - -1.9 5,963,327 + -2.3 5,963,327 + -2.3 5,963,327 + -2.7 5,963,327 + -2.8 5,963,327 + -1.9 5,963,327 + -3.1 5,963,327 + -0.1 5,963,328 - -2.5 5,963,328 - -2.2 5,963,328 - -0.2 5,963,328 - -0.9 5,963,329 + -2.4 5,963,329 + -2.0 5,963,329 + -2.1 5,963,329 + -1.6 5,963,330 - -3.5 5,963,333 + -1.4 5,963,366 + -2.7 5,963,366 + -2.5 5,963,366 + -1.9 5,963,367 - -0.9 5,963,367 - -1.1 5,963,367 - -2.3 5,963,367 - -2.3 5,963,367 - -2.1 5,963,434 + Pf6N2E2_5175 0.10 -2.0 5,963,434 + Pf6N2E2_5175 0.10 -1.9 5,963,434 + Pf6N2E2_5175 0.10 -3.0 5,963,478 + Pf6N2E2_5175 0.13 -2.7 5,963,479 - Pf6N2E2_5175 0.13 -2.5 5,963,534 + Pf6N2E2_5175 0.16 -2.7 5,963,535 - Pf6N2E2_5175 0.16 -3.7 5,963,535 - Pf6N2E2_5175 0.16 -1.1 5,963,535 - Pf6N2E2_5175 0.16 -3.6 5,963,705 + Pf6N2E2_5175 0.26 -2.8 5,963,706 - Pf6N2E2_5175 0.26 -1.0 5,963,706 - Pf6N2E2_5175 0.26 -1.7 5,963,706 - Pf6N2E2_5175 0.26 -2.8 5,963,782 - Pf6N2E2_5175 0.30 -0.9 5,963,786 + Pf6N2E2_5175 0.30 -2.8 5,963,786 + Pf6N2E2_5175 0.30 -1.4 5,963,786 + Pf6N2E2_5175 0.30 -1.8 5,963,787 - Pf6N2E2_5175 0.31 -1.6 5,963,787 - Pf6N2E2_5175 0.31 -2.6 5,963,787 - Pf6N2E2_5175 0.31 -3.0 5,963,787 - Pf6N2E2_5175 0.31 -3.0 5,963,819 + Pf6N2E2_5175 0.32 -2.9 5,963,819 + Pf6N2E2_5175 0.32 -2.7 5,963,820 - Pf6N2E2_5175 0.32 -1.4 5,963,900 + Pf6N2E2_5175 0.37 -2.4 5,963,900 + Pf6N2E2_5175 0.37 -1.6 5,963,900 + Pf6N2E2_5175 0.37 -3.1 5,963,983 + Pf6N2E2_5175 0.42 -0.6 5,963,984 - Pf6N2E2_5175 0.42 -1.3 5,964,034 + Pf6N2E2_5175 0.45 -2.6 5,964,035 - Pf6N2E2_5175 0.45 -2.0 5,964,035 - Pf6N2E2_5175 0.45 -0.9 5,964,056 + Pf6N2E2_5175 0.46 -1.6 5,964,056 + Pf6N2E2_5175 0.46 -3.4 5,964,057 - Pf6N2E2_5175 0.46 -3.5 5,964,237 + Pf6N2E2_5175 0.56 -2.2 5,964,238 - Pf6N2E2_5175 0.57 -2.0 5,964,292 + Pf6N2E2_5175 0.60 -2.6 5,964,292 + Pf6N2E2_5175 0.60 -2.4 5,964,293 - Pf6N2E2_5175 0.60 -3.9 5,964,363 - Pf6N2E2_5175 0.64 -0.9 5,964,363 - Pf6N2E2_5175 0.64 -2.2 5,964,485 + Pf6N2E2_5175 0.71 -1.7 5,964,485 + Pf6N2E2_5175 0.71 -0.8 5,964,486 - Pf6N2E2_5175 0.71 -1.8 5,964,486 - Pf6N2E2_5175 0.71 -3.3 5,964,488 + Pf6N2E2_5175 0.71 -2.6 5,964,488 + Pf6N2E2_5175 0.71 -2.1 5,964,488 + Pf6N2E2_5175 0.71 -2.5 5,964,488 + Pf6N2E2_5175 0.71 -1.9 5,964,488 + Pf6N2E2_5175 0.71 -1.9 5,964,488 + Pf6N2E2_5175 0.71 -2.4 5,964,489 - Pf6N2E2_5175 0.71 -2.6 5,964,489 - Pf6N2E2_5175 0.71 -2.4 5,964,489 - Pf6N2E2_5175 0.71 -1.7 5,964,489 - Pf6N2E2_5175 0.71 -2.3 5,964,662 + Pf6N2E2_5175 0.81 -3.3 5,964,663 - Pf6N2E2_5175 0.81 -1.1 5,964,737 + Pf6N2E2_5175 0.85 -2.4 5,964,738 - Pf6N2E2_5175 0.85 -1.9 5,964,761 + Pf6N2E2_5175 0.87 -3.3 5,964,761 + Pf6N2E2_5175 0.87 -1.7 5,964,761 + Pf6N2E2_5175 0.87 -2.3 5,964,761 + Pf6N2E2_5175 0.87 -0.1 5,964,761 + Pf6N2E2_5175 0.87 +0.1 5,964,762 - Pf6N2E2_5175 0.87 -0.8 5,964,762 - Pf6N2E2_5175 0.87 -3.1 5,964,803 + Pf6N2E2_5175 0.89 -2.1 5,964,961 + -1.8 5,964,961 + -2.7 5,964,985 + +0.5 5,964,985 + -0.2 5,964,985 + +0.8 5,964,986 - -3.4 5,964,989 + +1.4 5,964,989 + -1.9 5,964,989 + -1.1 5,964,989 + -2.0 5,964,989 + -1.3 5,964,990 - -1.3 5,964,990 - -0.3 5,964,990 - -0.4 5,964,990 - -1.8 5,965,005 + -1.9 5,965,005 + -2.5 5,965,006 - -1.8 5,965,006 - +0.8 5,965,006 - -1.1 5,965,006 - -0.9 5,965,052 + Pf6N2E2_5176 0.12 -2.5 5,965,052 + Pf6N2E2_5176 0.12 -2.6 5,965,052 + Pf6N2E2_5176 0.12 -2.8 5,965,052 + Pf6N2E2_5176 0.12 -1.8 5,965,052 + Pf6N2E2_5176 0.12 -2.4 5,965,075 + Pf6N2E2_5176 0.16 -3.0 5,965,075 + Pf6N2E2_5176 0.16 -3.4 5,965,075 + Pf6N2E2_5176 0.16 -2.2 5,965,076 - Pf6N2E2_5176 0.17 -0.9 5,965,076 - Pf6N2E2_5176 0.17 +2.4 5,965,076 - Pf6N2E2_5176 0.17 -3.3 5,965,076 - Pf6N2E2_5176 0.17 -2.3 5,965,076 - Pf6N2E2_5176 0.17 -2.9 5,965,302 + Pf6N2E2_5176 0.63 -1.2 5,965,303 - Pf6N2E2_5176 0.63 -2.8 5,965,303 - Pf6N2E2_5176 0.63 -1.7 5,965,303 - Pf6N2E2_5176 0.63 -2.5 5,965,303 - Pf6N2E2_5176 0.63 -3.3 5,965,305 + Pf6N2E2_5176 0.63 -0.6 5,965,305 + Pf6N2E2_5176 0.63 -2.2 5,965,312 - Pf6N2E2_5176 0.65 -1.8 5,965,316 - Pf6N2E2_5176 0.65 -2.7 5,965,316 - Pf6N2E2_5176 0.65 -3.2 5,965,316 - Pf6N2E2_5176 0.65 -0.2 5,965,351 + Pf6N2E2_5176 0.73 -2.5 5,965,351 + Pf6N2E2_5176 0.73 -1.1 5,965,351 + Pf6N2E2_5176 0.73 -3.4 5,965,351 + Pf6N2E2_5176 0.73 -3.1 5,965,351 + Pf6N2E2_5176 0.73 -2.3 5,965,352 - Pf6N2E2_5176 0.73 -3.0 5,965,352 - Pf6N2E2_5176 0.73 -1.6 5,965,352 - Pf6N2E2_5176 0.73 -0.8 5,965,353 + Pf6N2E2_5176 0.73 +0.8 5,965,472 + +1.9 5,965,472 + +2.2 5,965,472 + +2.0 5,965,472 + +2.2 5,965,473 - -2.6 5,965,473 - -1.2 5,965,473 - -2.6 5,965,483 + +0.1 5,965,484 - -2.7 5,965,484 - -2.2 5,965,493 + -1.4 5,965,543 + -0.9 5,965,867 + Pf6N2E2_5177 0.33 +0.4 5,965,867 + Pf6N2E2_5177 0.33 -0.5 5,965,867 + Pf6N2E2_5177 0.33 -3.9 5,965,867 + Pf6N2E2_5177 0.33 -2.7 5,965,867 + Pf6N2E2_5177 0.33 -2.5 5,965,868 - Pf6N2E2_5177 0.33 -2.6 5,965,988 - Pf6N2E2_5177 0.45 -1.9 5,965,988 - Pf6N2E2_5177 0.45 -2.8 5,965,988 - Pf6N2E2_5177 0.45 -2.6
Or see this region's nucleotide sequence