Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5156

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5155 and Pf6N2E2_5156 are separated by 718 nucleotidesPf6N2E2_5156 and Pf6N2E2_5157 are separated by 22 nucleotides Pf6N2E2_5155 - Poly(A) polymerase (EC 2.7.7.19), at 5,941,690 to 5,943,087 _5155 Pf6N2E2_5156 - Two-component sensor CbrB: intrcellular carbon:nitrogen balance, at 5,943,806 to 5,945,239 _5156 Pf6N2E2_5157 - Two-component sensor CbrA: intrcellular carbon:nitrogen balance, at 5,945,262 to 5,948,210 _5157 Position (kb) 5943 5944 5945 5946Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 5942.830 kb on + strand, within Pf6N2E2_5155at 5942.919 kb on - strand, within Pf6N2E2_5155at 5942.919 kb on - strand, within Pf6N2E2_5155at 5943.110 kb on - strandat 5943.154 kb on + strandat 5943.154 kb on + strandat 5943.155 kb on - strandat 5943.161 kb on + strandat 5943.161 kb on + strandat 5943.223 kb on + strandat 5943.224 kb on - strandat 5943.282 kb on + strandat 5943.283 kb on - strandat 5943.287 kb on - strandat 5943.302 kb on + strandat 5943.306 kb on - strandat 5943.468 kb on - strandat 5943.468 kb on - strandat 5943.503 kb on + strandat 5943.504 kb on - strandat 5943.504 kb on - strandat 5943.504 kb on - strandat 5943.504 kb on - strandat 5943.529 kb on + strandat 5943.530 kb on - strandat 5943.557 kb on - strandat 5943.581 kb on - strandat 5943.586 kb on + strandat 5943.608 kb on + strandat 5943.619 kb on + strandat 5943.628 kb on + strandat 5943.628 kb on + strandat 5943.629 kb on - strandat 5943.686 kb on + strandat 5943.686 kb on + strandat 5943.687 kb on - strandat 5943.688 kb on + strandat 5943.689 kb on - strandat 5943.732 kb on + strandat 5943.733 kb on - strandat 5943.733 kb on - strandat 5943.750 kb on - strandat 5943.768 kb on - strandat 5943.768 kb on - strandat 5943.955 kb on - strand, within Pf6N2E2_5156at 5944.326 kb on + strand, within Pf6N2E2_5156at 5944.326 kb on + strand, within Pf6N2E2_5156at 5944.327 kb on - strand, within Pf6N2E2_5156at 5944.767 kb on + strand, within Pf6N2E2_5156at 5944.816 kb on + strand, within Pf6N2E2_5156at 5944.822 kb on + strand, within Pf6N2E2_5156at 5944.956 kb on + strand, within Pf6N2E2_5156at 5944.957 kb on - strand, within Pf6N2E2_5156at 5944.957 kb on - strand, within Pf6N2E2_5156at 5945.334 kb on + strandat 5945.334 kb on + strandat 5945.335 kb on - strandat 5945.335 kb on - strandat 5945.390 kb on - strandat 5946.156 kb on + strand, within Pf6N2E2_5157

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,942,830 + Pf6N2E2_5155 0.82 +4.3
5,942,919 - Pf6N2E2_5155 0.88 +5.5
5,942,919 - Pf6N2E2_5155 0.88 +5.9
5,943,110 - +1.2
5,943,154 + +2.4
5,943,154 + +1.7
5,943,155 - +0.2
5,943,161 + +0.2
5,943,161 + -0.3
5,943,223 + +0.6
5,943,224 - +1.1
5,943,282 + +2.4
5,943,283 - +4.0
5,943,287 - +3.7
5,943,302 + +3.5
5,943,306 - +3.9
5,943,468 - +4.9
5,943,468 - +5.2
5,943,503 + +6.2
5,943,504 - +5.4
5,943,504 - +6.0
5,943,504 - +4.8
5,943,504 - +5.2
5,943,529 + +4.9
5,943,530 - +4.9
5,943,557 - +5.7
5,943,581 - +4.3
5,943,586 + +7.8
5,943,608 + +6.2
5,943,619 + +6.3
5,943,628 + +6.6
5,943,628 + +6.5
5,943,629 - +2.9
5,943,686 + +6.4
5,943,686 + +6.3
5,943,687 - +4.8
5,943,688 + +6.6
5,943,689 - +3.5
5,943,732 + +6.3
5,943,733 - +4.3
5,943,733 - +4.7
5,943,750 - +5.3
5,943,768 - +0.9
5,943,768 - +1.5
5,943,955 - Pf6N2E2_5156 0.10 -0.9
5,944,326 + Pf6N2E2_5156 0.36 -1.0
5,944,326 + Pf6N2E2_5156 0.36 +0.1
5,944,327 - Pf6N2E2_5156 0.36 -1.6
5,944,767 + Pf6N2E2_5156 0.67 -0.4
5,944,816 + Pf6N2E2_5156 0.70 -1.3
5,944,822 + Pf6N2E2_5156 0.71 +0.8
5,944,956 + Pf6N2E2_5156 0.80 -1.2
5,944,957 - Pf6N2E2_5156 0.80 -0.6
5,944,957 - Pf6N2E2_5156 0.80 +0.4
5,945,334 + +0.8
5,945,334 + -0.6
5,945,335 - +1.5
5,945,335 - +0.0
5,945,390 - +1.1
5,946,156 + Pf6N2E2_5157 0.30 +1.1

Or see this region's nucleotide sequence