Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5005 and Pf6N2E2_5006 are separated by 151 nucleotides Pf6N2E2_5006 and Pf6N2E2_5007 are separated by 112 nucleotides
Pf6N2E2_5005 - hypothetical protein, at 5,771,374 to 5,771,499
_5005
Pf6N2E2_5006 - Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13), at 5,771,651 to 5,772,595
_5006
Pf6N2E2_5007 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 5,772,708 to 5,774,030
_5007
Position (kb)
5771
5772
5773 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5770.818 kb on + strand at 5770.818 kb on + strand at 5770.819 kb on - strand at 5770.881 kb on + strand at 5770.882 kb on - strand at 5770.882 kb on - strand at 5770.884 kb on - strand at 5770.884 kb on - strand at 5770.898 kb on - strand at 5770.898 kb on - strand at 5770.950 kb on + strand at 5770.950 kb on + strand at 5770.950 kb on + strand at 5770.951 kb on - strand at 5770.951 kb on - strand at 5771.048 kb on + strand at 5771.048 kb on + strand at 5771.049 kb on - strand at 5771.057 kb on - strand at 5771.089 kb on - strand at 5771.103 kb on - strand at 5771.270 kb on - strand at 5771.363 kb on + strand at 5771.547 kb on + strand at 5771.578 kb on + strand at 5771.592 kb on + strand at 5771.592 kb on + strand at 5771.592 kb on + strand at 5771.593 kb on - strand at 5771.593 kb on - strand at 5771.593 kb on - strand at 5771.593 kb on - strand at 5771.593 kb on - strand at 5771.593 kb on - strand at 5771.593 kb on - strand at 5771.593 kb on - strand at 5771.593 kb on - strand at 5771.597 kb on - strand at 5771.620 kb on + strand at 5771.620 kb on + strand at 5771.620 kb on + strand at 5771.620 kb on + strand at 5771.620 kb on + strand at 5771.620 kb on + strand at 5771.620 kb on + strand at 5771.620 kb on + strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.621 kb on - strand at 5771.628 kb on - strand at 5771.628 kb on - strand at 5771.628 kb on - strand at 5771.628 kb on - strand at 5771.628 kb on - strand at 5771.664 kb on - strand at 5771.664 kb on - strand at 5771.670 kb on + strand at 5771.831 kb on + strand, within Pf6N2E2_5006 at 5771.831 kb on + strand, within Pf6N2E2_5006 at 5771.831 kb on + strand, within Pf6N2E2_5006 at 5771.832 kb on - strand, within Pf6N2E2_5006 at 5771.832 kb on - strand, within Pf6N2E2_5006 at 5771.832 kb on - strand, within Pf6N2E2_5006 at 5771.853 kb on + strand, within Pf6N2E2_5006 at 5771.854 kb on - strand, within Pf6N2E2_5006 at 5771.854 kb on - strand, within Pf6N2E2_5006 at 5771.991 kb on + strand, within Pf6N2E2_5006 at 5771.991 kb on + strand, within Pf6N2E2_5006 at 5771.996 kb on + strand, within Pf6N2E2_5006 at 5771.997 kb on - strand, within Pf6N2E2_5006 at 5772.159 kb on + strand, within Pf6N2E2_5006 at 5772.159 kb on + strand, within Pf6N2E2_5006 at 5772.160 kb on - strand, within Pf6N2E2_5006 at 5772.160 kb on - strand, within Pf6N2E2_5006 at 5772.160 kb on - strand, within Pf6N2E2_5006 at 5772.176 kb on + strand, within Pf6N2E2_5006 at 5772.176 kb on + strand, within Pf6N2E2_5006 at 5772.177 kb on - strand, within Pf6N2E2_5006 at 5772.323 kb on + strand, within Pf6N2E2_5006 at 5772.378 kb on + strand, within Pf6N2E2_5006 at 5772.594 kb on - strand at 5772.601 kb on + strand at 5772.602 kb on - strand at 5772.602 kb on - strand at 5772.700 kb on - strand at 5772.922 kb on + strand, within Pf6N2E2_5007 at 5772.923 kb on - strand, within Pf6N2E2_5007 at 5772.958 kb on - strand, within Pf6N2E2_5007 at 5772.976 kb on + strand, within Pf6N2E2_5007 at 5772.977 kb on - strand, within Pf6N2E2_5007 at 5772.994 kb on + strand, within Pf6N2E2_5007 at 5772.994 kb on + strand, within Pf6N2E2_5007 at 5772.994 kb on + strand, within Pf6N2E2_5007 at 5772.994 kb on + strand, within Pf6N2E2_5007 at 5772.994 kb on + strand, within Pf6N2E2_5007 at 5772.994 kb on + strand, within Pf6N2E2_5007 at 5772.995 kb on - strand, within Pf6N2E2_5007 at 5773.111 kb on + strand, within Pf6N2E2_5007 at 5773.112 kb on - strand, within Pf6N2E2_5007 at 5773.177 kb on + strand, within Pf6N2E2_5007 at 5773.250 kb on - strand, within Pf6N2E2_5007 at 5773.250 kb on - strand, within Pf6N2E2_5007 at 5773.336 kb on + strand, within Pf6N2E2_5007 at 5773.336 kb on + strand, within Pf6N2E2_5007 at 5773.336 kb on + strand, within Pf6N2E2_5007 at 5773.336 kb on + strand, within Pf6N2E2_5007 at 5773.336 kb on + strand, within Pf6N2E2_5007 at 5773.337 kb on - strand, within Pf6N2E2_5007 at 5773.337 kb on - strand, within Pf6N2E2_5007 at 5773.337 kb on - strand, within Pf6N2E2_5007 at 5773.514 kb on + strand, within Pf6N2E2_5007 at 5773.514 kb on + strand, within Pf6N2E2_5007
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,770,818 + +0.5 5,770,818 + +0.0 5,770,819 - -0.6 5,770,881 + +0.2 5,770,882 - +0.5 5,770,882 - -1.3 5,770,884 - -0.7 5,770,884 - -2.7 5,770,898 - -1.6 5,770,898 - -0.2 5,770,950 + -0.4 5,770,950 + +0.2 5,770,950 + -0.6 5,770,951 - -0.3 5,770,951 - -1.3 5,771,048 + -0.2 5,771,048 + +0.2 5,771,049 - -1.3 5,771,057 - +0.7 5,771,089 - +0.5 5,771,103 - +0.7 5,771,270 - -0.7 5,771,363 + +0.2 5,771,547 + +0.4 5,771,578 + +0.9 5,771,592 + -0.4 5,771,592 + +1.5 5,771,592 + +0.1 5,771,593 - +0.8 5,771,593 - -0.4 5,771,593 - +0.0 5,771,593 - -0.2 5,771,593 - -0.5 5,771,593 - -0.1 5,771,593 - +0.2 5,771,593 - -0.7 5,771,593 - +0.2 5,771,597 - -0.2 5,771,620 + -0.3 5,771,620 + -0.7 5,771,620 + +1.0 5,771,620 + +0.3 5,771,620 + -1.0 5,771,620 + +1.6 5,771,620 + +0.3 5,771,620 + +1.2 5,771,621 - -0.2 5,771,621 - +0.6 5,771,621 - -0.1 5,771,621 - -1.1 5,771,621 - -0.6 5,771,621 - -0.3 5,771,621 - -2.2 5,771,621 - +0.7 5,771,621 - -0.7 5,771,621 - +0.4 5,771,621 - -0.7 5,771,621 - +0.1 5,771,621 - -0.4 5,771,621 - -0.5 5,771,621 - +1.5 5,771,621 - +0.1 5,771,628 - +0.0 5,771,628 - +1.2 5,771,628 - -1.5 5,771,628 - -0.7 5,771,628 - -2.0 5,771,664 - -1.5 5,771,664 - -3.1 5,771,670 + -0.5 5,771,831 + Pf6N2E2_5006 0.19 -2.2 5,771,831 + Pf6N2E2_5006 0.19 -2.6 5,771,831 + Pf6N2E2_5006 0.19 -2.2 5,771,832 - Pf6N2E2_5006 0.19 -3.3 5,771,832 - Pf6N2E2_5006 0.19 -2.6 5,771,832 - Pf6N2E2_5006 0.19 -2.2 5,771,853 + Pf6N2E2_5006 0.21 -2.2 5,771,854 - Pf6N2E2_5006 0.21 +0.2 5,771,854 - Pf6N2E2_5006 0.21 -2.2 5,771,991 + Pf6N2E2_5006 0.36 -2.9 5,771,991 + Pf6N2E2_5006 0.36 -1.9 5,771,996 + Pf6N2E2_5006 0.37 -2.1 5,771,997 - Pf6N2E2_5006 0.37 -1.5 5,772,159 + Pf6N2E2_5006 0.54 -3.0 5,772,159 + Pf6N2E2_5006 0.54 -2.4 5,772,160 - Pf6N2E2_5006 0.54 -0.5 5,772,160 - Pf6N2E2_5006 0.54 -2.7 5,772,160 - Pf6N2E2_5006 0.54 -3.1 5,772,176 + Pf6N2E2_5006 0.56 -1.9 5,772,176 + Pf6N2E2_5006 0.56 -3.8 5,772,177 - Pf6N2E2_5006 0.56 -2.6 5,772,323 + Pf6N2E2_5006 0.71 -2.1 5,772,378 + Pf6N2E2_5006 0.77 -1.3 5,772,594 - -1.9 5,772,601 + +0.6 5,772,602 - +0.5 5,772,602 - +2.0 5,772,700 - +1.0 5,772,922 + Pf6N2E2_5007 0.16 +2.2 5,772,923 - Pf6N2E2_5007 0.16 +1.3 5,772,958 - Pf6N2E2_5007 0.19 +1.4 5,772,976 + Pf6N2E2_5007 0.20 +1.5 5,772,977 - Pf6N2E2_5007 0.20 +0.6 5,772,994 + Pf6N2E2_5007 0.22 -0.2 5,772,994 + Pf6N2E2_5007 0.22 +0.5 5,772,994 + Pf6N2E2_5007 0.22 +0.9 5,772,994 + Pf6N2E2_5007 0.22 +0.8 5,772,994 + Pf6N2E2_5007 0.22 -0.1 5,772,994 + Pf6N2E2_5007 0.22 +0.0 5,772,995 - Pf6N2E2_5007 0.22 +0.4 5,773,111 + Pf6N2E2_5007 0.30 +0.5 5,773,112 - Pf6N2E2_5007 0.31 +0.9 5,773,177 + Pf6N2E2_5007 0.35 +0.0 5,773,250 - Pf6N2E2_5007 0.41 -0.6 5,773,250 - Pf6N2E2_5007 0.41 -0.9 5,773,336 + Pf6N2E2_5007 0.47 +2.3 5,773,336 + Pf6N2E2_5007 0.47 +0.6 5,773,336 + Pf6N2E2_5007 0.47 -0.4 5,773,336 + Pf6N2E2_5007 0.47 +1.2 5,773,336 + Pf6N2E2_5007 0.47 +0.9 5,773,337 - Pf6N2E2_5007 0.48 -0.0 5,773,337 - Pf6N2E2_5007 0.48 +0.1 5,773,337 - Pf6N2E2_5007 0.48 +0.6 5,773,514 + Pf6N2E2_5007 0.61 +1.8 5,773,514 + Pf6N2E2_5007 0.61 +0.7
Or see this region's nucleotide sequence