Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4968 and Pf6N2E2_4969 overlap by 8 nucleotides Pf6N2E2_4969 and Pf6N2E2_4970 are separated by 443 nucleotides
Pf6N2E2_4968 - DNA cytosine methyltransferase M.NgoMIII, at 5,731,516 to 5,732,685
_4968
Pf6N2E2_4969 - hypothetical protein, at 5,732,678 to 5,732,830
_4969
Pf6N2E2_4970 - Serine phosphatase RsbU, regulator of sigma subunit, at 5,733,274 to 5,735,517
_4970
Position (kb) 5732
5733 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5732.751 kb on - strand, within Pf6N2E2_4969 at 5732.859 kb on - strand at 5732.859 kb on - strand at 5732.883 kb on - strand at 5732.883 kb on - strand at 5732.885 kb on - strand at 5732.906 kb on - strand at 5732.906 kb on - strand at 5732.948 kb on - strand at 5732.983 kb on - strand at 5732.983 kb on - strand at 5732.998 kb on - strand at 5732.998 kb on - strand at 5733.003 kb on - strand at 5733.030 kb on + strand at 5733.030 kb on + strand at 5733.031 kb on - strand at 5733.031 kb on - strand at 5733.052 kb on - strand at 5733.097 kb on + strand at 5733.097 kb on + strand at 5733.097 kb on + strand at 5733.097 kb on + strand at 5733.098 kb on - strand at 5733.098 kb on - strand at 5733.098 kb on - strand at 5733.101 kb on + strand at 5733.101 kb on + strand at 5733.101 kb on + strand at 5733.101 kb on + strand at 5733.101 kb on + strand at 5733.101 kb on + strand at 5733.102 kb on - strand at 5733.102 kb on - strand at 5733.102 kb on - strand at 5733.129 kb on - strand at 5733.184 kb on + strand at 5733.184 kb on + strand at 5733.185 kb on - strand at 5733.185 kb on - strand at 5733.185 kb on - strand at 5733.204 kb on + strand at 5733.208 kb on + strand at 5733.208 kb on + strand at 5733.208 kb on + strand at 5733.208 kb on + strand at 5733.208 kb on + strand at 5733.208 kb on + strand at 5733.209 kb on - strand at 5733.209 kb on - strand at 5733.209 kb on - strand at 5733.209 kb on - strand at 5733.257 kb on + strand at 5733.258 kb on - strand at 5733.338 kb on + strand at 5733.339 kb on - strand at 5733.365 kb on + strand at 5733.365 kb on + strand at 5733.365 kb on + strand at 5733.366 kb on - strand at 5733.366 kb on - strand at 5733.366 kb on - strand at 5733.369 kb on + strand at 5733.369 kb on + strand at 5733.369 kb on + strand at 5733.369 kb on + strand at 5733.369 kb on + strand at 5733.369 kb on + strand at 5733.370 kb on - strand at 5733.370 kb on - strand at 5733.370 kb on - strand at 5733.370 kb on - strand at 5733.370 kb on - strand at 5733.370 kb on - strand at 5733.370 kb on - strand at 5733.370 kb on - strand at 5733.370 kb on - strand at 5733.370 kb on - strand at 5733.420 kb on - strand at 5733.420 kb on - strand at 5733.452 kb on + strand at 5733.452 kb on + strand at 5733.453 kb on - strand at 5733.560 kb on - strand, within Pf6N2E2_4970 at 5733.591 kb on + strand, within Pf6N2E2_4970 at 5733.648 kb on - strand, within Pf6N2E2_4970 at 5733.648 kb on - strand, within Pf6N2E2_4970 at 5733.648 kb on - strand, within Pf6N2E2_4970 at 5733.676 kb on - strand, within Pf6N2E2_4970 at 5733.678 kb on + strand, within Pf6N2E2_4970 at 5733.678 kb on + strand, within Pf6N2E2_4970 at 5733.679 kb on - strand, within Pf6N2E2_4970
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,732,751 - Pf6N2E2_4969 0.48 -1.2 5,732,859 - +0.1 5,732,859 - -0.8 5,732,883 - +0.1 5,732,883 - +0.3 5,732,885 - -0.2 5,732,906 - +0.6 5,732,906 - -0.0 5,732,948 - +0.9 5,732,983 - -0.5 5,732,983 - +0.3 5,732,998 - +0.4 5,732,998 - +0.7 5,733,003 - +0.5 5,733,030 + -0.4 5,733,030 + +0.6 5,733,031 - +1.4 5,733,031 - +1.8 5,733,052 - +1.1 5,733,097 + -0.4 5,733,097 + +0.9 5,733,097 + +0.2 5,733,097 + +0.5 5,733,098 - -0.2 5,733,098 - +0.8 5,733,098 - -1.7 5,733,101 + +1.0 5,733,101 + +3.5 5,733,101 + -0.1 5,733,101 + -1.3 5,733,101 + -0.1 5,733,101 + +0.0 5,733,102 - -0.0 5,733,102 - -0.9 5,733,102 - -0.5 5,733,129 - -0.1 5,733,184 + +0.4 5,733,184 + +0.4 5,733,185 - -1.1 5,733,185 - -2.3 5,733,185 - +0.2 5,733,204 + +0.2 5,733,208 + +1.0 5,733,208 + -0.4 5,733,208 + -0.2 5,733,208 + +0.0 5,733,208 + -0.7 5,733,208 + -0.2 5,733,209 - +2.2 5,733,209 - -0.4 5,733,209 - -0.1 5,733,209 - -0.0 5,733,257 + +0.9 5,733,258 - -1.4 5,733,338 + -0.6 5,733,339 - +0.5 5,733,365 + +0.5 5,733,365 + +0.6 5,733,365 + -0.2 5,733,366 - +0.2 5,733,366 - +0.6 5,733,366 - -0.1 5,733,369 + -0.2 5,733,369 + +0.9 5,733,369 + +2.8 5,733,369 + +0.5 5,733,369 + -1.1 5,733,369 + +1.9 5,733,370 - +0.9 5,733,370 - +0.4 5,733,370 - +0.6 5,733,370 - +0.8 5,733,370 - -1.4 5,733,370 - +0.2 5,733,370 - +0.7 5,733,370 - -2.0 5,733,370 - +1.2 5,733,370 - -0.6 5,733,420 - +0.1 5,733,420 - -1.4 5,733,452 + +1.0 5,733,452 + -0.2 5,733,453 - -0.1 5,733,560 - Pf6N2E2_4970 0.13 +1.5 5,733,591 + Pf6N2E2_4970 0.14 +0.2 5,733,648 - Pf6N2E2_4970 0.17 +0.2 5,733,648 - Pf6N2E2_4970 0.17 +1.9 5,733,648 - Pf6N2E2_4970 0.17 +0.2 5,733,676 - Pf6N2E2_4970 0.18 -0.4 5,733,678 + Pf6N2E2_4970 0.18 +0.2 5,733,678 + Pf6N2E2_4970 0.18 +1.2 5,733,679 - Pf6N2E2_4970 0.18 +0.8
Or see this region's nucleotide sequence