Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_49

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_47 and Pf6N2E2_48 are separated by 89 nucleotidesPf6N2E2_48 and Pf6N2E2_6095 are separated by 251 nucleotidesPf6N2E2_6095 and Pf6N2E2_49 are separated by 235 nucleotidesPf6N2E2_49 and Pf6N2E2_50 are separated by 212 nucleotides Pf6N2E2_47 - FIG00961567: hypothetical protein, at 87,322 to 87,504 _47 Pf6N2E2_48 - FIG00955661: hypothetical protein, at 87,594 to 87,788 _48 Pf6N2E2_6095 - tRNA-Asn-GTT, at 88,040 to 88,112 _6095 Pf6N2E2_49 - FIG00967200: hypothetical protein, at 88,348 to 88,575 _49 Pf6N2E2_50 - Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57), at 88,788 to 89,984 _50 Position (kb) 88 89Strain fitness (log2 ratio) -2 -1 0 1 2 3at 87.531 kb on + strandat 87.531 kb on + strandat 87.536 kb on + strandat 87.536 kb on + strandat 87.536 kb on + strandat 87.575 kb on + strandat 87.575 kb on + strandat 87.575 kb on + strandat 87.576 kb on - strandat 87.578 kb on + strandat 87.579 kb on - strandat 87.733 kb on + strand, within Pf6N2E2_48at 87.734 kb on - strand, within Pf6N2E2_48at 87.734 kb on - strand, within Pf6N2E2_48at 87.788 kb on + strandat 87.788 kb on + strandat 87.806 kb on + strandat 87.806 kb on + strandat 87.807 kb on - strandat 87.906 kb on + strandat 87.928 kb on + strandat 87.929 kb on - strandat 87.975 kb on + strandat 88.034 kb on - strandat 88.077 kb on - strand, within Pf6N2E2_6095at 88.077 kb on - strand, within Pf6N2E2_6095at 88.093 kb on - strand, within Pf6N2E2_6095at 88.093 kb on - strand, within Pf6N2E2_6095at 88.126 kb on + strandat 88.233 kb on + strandat 88.234 kb on - strandat 88.285 kb on + strandat 88.286 kb on - strandat 88.286 kb on - strandat 88.286 kb on - strandat 88.286 kb on - strandat 88.291 kb on - strandat 88.291 kb on - strandat 88.311 kb on + strandat 88.312 kb on - strandat 88.405 kb on + strand, within Pf6N2E2_49at 88.406 kb on - strand, within Pf6N2E2_49at 88.406 kb on - strand, within Pf6N2E2_49at 88.491 kb on + strand, within Pf6N2E2_49at 88.529 kb on - strand, within Pf6N2E2_49at 88.537 kb on + strand, within Pf6N2E2_49at 88.574 kb on - strandat 88.624 kb on - strandat 88.777 kb on + strandat 88.800 kb on + strandat 88.800 kb on + strandat 88.800 kb on + strandat 88.801 kb on - strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.877 kb on - strandat 88.877 kb on - strandat 88.877 kb on - strandat 88.877 kb on - strandat 88.877 kb on - strandat 88.930 kb on + strand, within Pf6N2E2_50at 88.931 kb on - strand, within Pf6N2E2_50at 88.931 kb on - strand, within Pf6N2E2_50at 89.131 kb on + strand, within Pf6N2E2_50at 89.131 kb on + strand, within Pf6N2E2_50at 89.132 kb on - strand, within Pf6N2E2_50at 89.530 kb on + strand, within Pf6N2E2_50at 89.531 kb on - strand, within Pf6N2E2_50

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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87,531 + +0.9
87,531 + +1.8
87,536 + +1.1
87,536 + +1.2
87,536 + +0.0
87,575 + -0.5
87,575 + -0.1
87,575 + -0.2
87,576 - +0.1
87,578 + +0.2
87,579 - -0.0
87,733 + Pf6N2E2_48 0.71 -0.1
87,734 - Pf6N2E2_48 0.72 +0.3
87,734 - Pf6N2E2_48 0.72 +0.2
87,788 + +0.6
87,788 + -0.2
87,806 + +1.1
87,806 + -0.9
87,807 - +0.7
87,906 + -1.0
87,928 + -1.1
87,929 - -0.2
87,975 + +0.8
88,034 - -0.4
88,077 - Pf6N2E2_6095 0.51 +0.2
88,077 - Pf6N2E2_6095 0.51 -1.8
88,093 - Pf6N2E2_6095 0.73 -0.1
88,093 - Pf6N2E2_6095 0.73 -0.6
88,126 + +0.8
88,233 + -0.9
88,234 - -0.5
88,285 + -0.2
88,286 - -0.6
88,286 - +0.0
88,286 - +0.8
88,286 - +0.4
88,291 - +0.5
88,291 - +0.2
88,311 + -0.6
88,312 - -0.4
88,405 + Pf6N2E2_49 0.25 -1.3
88,406 - Pf6N2E2_49 0.25 -1.5
88,406 - Pf6N2E2_49 0.25 +0.0
88,491 + Pf6N2E2_49 0.63 -2.3
88,529 - Pf6N2E2_49 0.79 +1.5
88,537 + Pf6N2E2_49 0.83 -0.2
88,574 - +1.8
88,624 - -0.4
88,777 + -0.3
88,800 + +0.4
88,800 + +0.9
88,800 + -0.4
88,801 - +0.6
88,876 + +0.9
88,876 + +0.4
88,876 + +1.9
88,876 + -0.3
88,876 + +0.4
88,876 + +0.5
88,876 + +1.6
88,876 + +1.6
88,876 + +0.5
88,876 + +0.8
88,877 - +0.7
88,877 - +0.5
88,877 - +1.0
88,877 - -1.5
88,877 - +0.4
88,930 + Pf6N2E2_50 0.12 +0.1
88,931 - Pf6N2E2_50 0.12 +0.3
88,931 - Pf6N2E2_50 0.12 +0.3
89,131 + Pf6N2E2_50 0.29 -1.5
89,131 + Pf6N2E2_50 0.29 +1.0
89,132 - Pf6N2E2_50 0.29 +1.1
89,530 + Pf6N2E2_50 0.62 +2.8
89,531 - Pf6N2E2_50 0.62 -0.6

Or see this region's nucleotide sequence