Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4826

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4825 and Pf6N2E2_4826 overlap by 4 nucleotidesPf6N2E2_4826 and Pf6N2E2_4827 are separated by 3 nucleotidesPf6N2E2_4827 and Pf6N2E2_4828 overlap by 4 nucleotides Pf6N2E2_4825 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 5,579,815 to 5,580,864 _4825 Pf6N2E2_4826 - Indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 5,580,861 to 5,581,697 _4826 Pf6N2E2_4827 - Lipoate-protein ligase A, at 5,581,701 to 5,582,402 _4827 Pf6N2E2_4828 - Vfr transcriptional regulator / Cyclic AMP receptor protein, at 5,582,399 to 5,583,043 _4828 Position (kb) 5580 5581 5582Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5580.081 kb on + strand, within Pf6N2E2_4825at 5580.081 kb on + strand, within Pf6N2E2_4825at 5580.208 kb on + strand, within Pf6N2E2_4825at 5580.208 kb on + strand, within Pf6N2E2_4825at 5580.208 kb on + strand, within Pf6N2E2_4825at 5580.208 kb on + strand, within Pf6N2E2_4825at 5580.209 kb on - strand, within Pf6N2E2_4825at 5580.209 kb on - strand, within Pf6N2E2_4825at 5580.243 kb on + strand, within Pf6N2E2_4825at 5580.288 kb on + strand, within Pf6N2E2_4825at 5580.363 kb on + strand, within Pf6N2E2_4825at 5580.363 kb on + strand, within Pf6N2E2_4825at 5580.363 kb on + strand, within Pf6N2E2_4825at 5580.392 kb on + strand, within Pf6N2E2_4825at 5580.393 kb on - strand, within Pf6N2E2_4825at 5580.516 kb on + strand, within Pf6N2E2_4825at 5580.517 kb on - strand, within Pf6N2E2_4825at 5580.517 kb on - strand, within Pf6N2E2_4825at 5580.517 kb on - strand, within Pf6N2E2_4825at 5580.517 kb on - strand, within Pf6N2E2_4825at 5580.556 kb on + strand, within Pf6N2E2_4825at 5580.582 kb on + strand, within Pf6N2E2_4825at 5580.728 kb on - strand, within Pf6N2E2_4825at 5580.728 kb on - strand, within Pf6N2E2_4825at 5580.831 kb on + strandat 5580.831 kb on + strandat 5580.831 kb on + strandat 5580.831 kb on + strandat 5580.831 kb on + strandat 5580.832 kb on - strandat 5580.832 kb on - strandat 5580.839 kb on + strandat 5580.839 kb on + strandat 5580.840 kb on - strandat 5580.966 kb on - strand, within Pf6N2E2_4826at 5581.113 kb on + strand, within Pf6N2E2_4826at 5581.130 kb on + strand, within Pf6N2E2_4826at 5581.130 kb on + strand, within Pf6N2E2_4826at 5581.130 kb on + strand, within Pf6N2E2_4826at 5581.182 kb on + strand, within Pf6N2E2_4826at 5581.584 kb on + strand, within Pf6N2E2_4826at 5581.584 kb on + strand, within Pf6N2E2_4826at 5581.584 kb on + strand, within Pf6N2E2_4826at 5581.584 kb on + strand, within Pf6N2E2_4826at 5581.584 kb on + strand, within Pf6N2E2_4826at 5581.584 kb on + strand, within Pf6N2E2_4826at 5581.584 kb on + strand, within Pf6N2E2_4826at 5581.584 kb on + strand, within Pf6N2E2_4826at 5581.584 kb on + strand, within Pf6N2E2_4826at 5581.867 kb on - strand, within Pf6N2E2_4827at 5581.879 kb on + strand, within Pf6N2E2_4827at 5581.959 kb on - strand, within Pf6N2E2_4827at 5581.971 kb on + strand, within Pf6N2E2_4827at 5581.971 kb on + strand, within Pf6N2E2_4827at 5581.972 kb on - strand, within Pf6N2E2_4827at 5581.972 kb on - strand, within Pf6N2E2_4827at 5581.972 kb on - strand, within Pf6N2E2_4827at 5582.006 kb on + strand, within Pf6N2E2_4827at 5582.367 kb on + strandat 5582.650 kb on + strand, within Pf6N2E2_4828at 5582.650 kb on + strand, within Pf6N2E2_4828at 5582.651 kb on - strand, within Pf6N2E2_4828at 5582.651 kb on - strand, within Pf6N2E2_4828at 5582.651 kb on - strand, within Pf6N2E2_4828at 5582.685 kb on - strand, within Pf6N2E2_4828at 5582.685 kb on - strand, within Pf6N2E2_4828at 5582.685 kb on - strand, within Pf6N2E2_4828at 5582.685 kb on - strand, within Pf6N2E2_4828at 5582.688 kb on + strand, within Pf6N2E2_4828at 5582.688 kb on + strand, within Pf6N2E2_4828at 5582.689 kb on - strand, within Pf6N2E2_4828at 5582.689 kb on - strand, within Pf6N2E2_4828

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,580,081 + Pf6N2E2_4825 0.25 -2.2
5,580,081 + Pf6N2E2_4825 0.25 -0.3
5,580,208 + Pf6N2E2_4825 0.37 -2.9
5,580,208 + Pf6N2E2_4825 0.37 -2.8
5,580,208 + Pf6N2E2_4825 0.37 -1.1
5,580,208 + Pf6N2E2_4825 0.37 -2.2
5,580,209 - Pf6N2E2_4825 0.38 -1.3
5,580,209 - Pf6N2E2_4825 0.38 -1.9
5,580,243 + Pf6N2E2_4825 0.41 -3.7
5,580,288 + Pf6N2E2_4825 0.45 -1.8
5,580,363 + Pf6N2E2_4825 0.52 -1.8
5,580,363 + Pf6N2E2_4825 0.52 -1.2
5,580,363 + Pf6N2E2_4825 0.52 -3.5
5,580,392 + Pf6N2E2_4825 0.55 -3.3
5,580,393 - Pf6N2E2_4825 0.55 -1.2
5,580,516 + Pf6N2E2_4825 0.67 -2.8
5,580,517 - Pf6N2E2_4825 0.67 -2.6
5,580,517 - Pf6N2E2_4825 0.67 -2.6
5,580,517 - Pf6N2E2_4825 0.67 -2.7
5,580,517 - Pf6N2E2_4825 0.67 -1.9
5,580,556 + Pf6N2E2_4825 0.71 -3.3
5,580,582 + Pf6N2E2_4825 0.73 -3.3
5,580,728 - Pf6N2E2_4825 0.87 -2.2
5,580,728 - Pf6N2E2_4825 0.87 -2.1
5,580,831 + -1.6
5,580,831 + -1.5
5,580,831 + -0.5
5,580,831 + -2.0
5,580,831 + -2.0
5,580,832 - -2.4
5,580,832 - -2.2
5,580,839 + +1.2
5,580,839 + +1.5
5,580,840 - -0.8
5,580,966 - Pf6N2E2_4826 0.13 -0.7
5,581,113 + Pf6N2E2_4826 0.30 -2.0
5,581,130 + Pf6N2E2_4826 0.32 -2.8
5,581,130 + Pf6N2E2_4826 0.32 -1.8
5,581,130 + Pf6N2E2_4826 0.32 -1.1
5,581,182 + Pf6N2E2_4826 0.38 -2.7
5,581,584 + Pf6N2E2_4826 0.86 -3.3
5,581,584 + Pf6N2E2_4826 0.86 -1.4
5,581,584 + Pf6N2E2_4826 0.86 -1.3
5,581,584 + Pf6N2E2_4826 0.86 -3.2
5,581,584 + Pf6N2E2_4826 0.86 -1.6
5,581,584 + Pf6N2E2_4826 0.86 -3.2
5,581,584 + Pf6N2E2_4826 0.86 -2.1
5,581,584 + Pf6N2E2_4826 0.86 -1.5
5,581,584 + Pf6N2E2_4826 0.86 -2.8
5,581,867 - Pf6N2E2_4827 0.24 +0.8
5,581,879 + Pf6N2E2_4827 0.25 -0.2
5,581,959 - Pf6N2E2_4827 0.37 -0.5
5,581,971 + Pf6N2E2_4827 0.38 +1.8
5,581,971 + Pf6N2E2_4827 0.38 -0.4
5,581,972 - Pf6N2E2_4827 0.39 -1.2
5,581,972 - Pf6N2E2_4827 0.39 +0.8
5,581,972 - Pf6N2E2_4827 0.39 -0.2
5,582,006 + Pf6N2E2_4827 0.43 -0.2
5,582,367 + +0.5
5,582,650 + Pf6N2E2_4828 0.39 -0.2
5,582,650 + Pf6N2E2_4828 0.39 +0.5
5,582,651 - Pf6N2E2_4828 0.39 +0.1
5,582,651 - Pf6N2E2_4828 0.39 -0.7
5,582,651 - Pf6N2E2_4828 0.39 +0.1
5,582,685 - Pf6N2E2_4828 0.44 +2.0
5,582,685 - Pf6N2E2_4828 0.44 +0.6
5,582,685 - Pf6N2E2_4828 0.44 +0.8
5,582,685 - Pf6N2E2_4828 0.44 +1.4
5,582,688 + Pf6N2E2_4828 0.45 +1.6
5,582,688 + Pf6N2E2_4828 0.45 +0.4
5,582,689 - Pf6N2E2_4828 0.45 +1.5
5,582,689 - Pf6N2E2_4828 0.45 +0.6

Or see this region's nucleotide sequence