Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4823 and Pf6N2E2_4824 are separated by 345 nucleotides Pf6N2E2_4824 and Pf6N2E2_4825 are separated by 9 nucleotides Pf6N2E2_4825 and Pf6N2E2_4826 overlap by 4 nucleotides Pf6N2E2_4826 and Pf6N2E2_4827 are separated by 3 nucleotides
Pf6N2E2_4823 - Phospholipase/lecithinase/hemolysin, at 5,576,893 to 5,578,866
_4823
Pf6N2E2_4824 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 5,579,212 to 5,579,805
_4824
Pf6N2E2_4825 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 5,579,815 to 5,580,864
_4825
Pf6N2E2_4826 - Indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 5,580,861 to 5,581,697
_4826
Pf6N2E2_4827 - Lipoate-protein ligase A, at 5,581,701 to 5,582,402
_4827
Position (kb) 5579
5580
5581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5578.816 kb on + strand at 5578.817 kb on - strand at 5578.822 kb on - strand at 5578.849 kb on - strand at 5578.921 kb on + strand at 5578.922 kb on - strand at 5578.941 kb on + strand at 5578.941 kb on + strand at 5578.941 kb on + strand at 5578.942 kb on - strand at 5578.942 kb on - strand at 5578.942 kb on - strand at 5578.942 kb on - strand at 5578.942 kb on - strand at 5578.942 kb on - strand at 5578.942 kb on - strand at 5578.946 kb on + strand at 5578.946 kb on + strand at 5578.946 kb on + strand at 5578.947 kb on - strand at 5578.947 kb on - strand at 5578.947 kb on - strand at 5578.947 kb on - strand at 5578.961 kb on + strand at 5578.962 kb on - strand at 5578.962 kb on - strand at 5578.962 kb on - strand at 5579.104 kb on + strand at 5579.104 kb on + strand at 5579.105 kb on - strand at 5579.179 kb on + strand at 5579.179 kb on + strand at 5579.179 kb on + strand at 5579.179 kb on + strand at 5579.180 kb on - strand at 5579.197 kb on + strand at 5579.197 kb on + strand at 5579.197 kb on + strand at 5579.198 kb on - strand at 5579.198 kb on - strand at 5579.198 kb on - strand at 5579.233 kb on + strand at 5579.233 kb on + strand at 5579.233 kb on + strand at 5579.233 kb on + strand at 5579.233 kb on + strand at 5579.233 kb on + strand at 5579.234 kb on - strand at 5579.234 kb on - strand at 5579.234 kb on - strand at 5579.234 kb on - strand at 5579.234 kb on - strand at 5579.234 kb on - strand at 5579.234 kb on - strand at 5579.244 kb on + strand at 5579.245 kb on - strand at 5579.248 kb on + strand at 5579.248 kb on + strand at 5579.249 kb on - strand at 5579.249 kb on - strand at 5579.263 kb on + strand at 5579.413 kb on + strand, within Pf6N2E2_4824 at 5579.413 kb on + strand, within Pf6N2E2_4824 at 5579.413 kb on + strand, within Pf6N2E2_4824 at 5579.493 kb on - strand, within Pf6N2E2_4824 at 5579.518 kb on - strand, within Pf6N2E2_4824 at 5579.523 kb on + strand, within Pf6N2E2_4824 at 5579.523 kb on + strand, within Pf6N2E2_4824 at 5579.523 kb on + strand, within Pf6N2E2_4824 at 5579.524 kb on - strand, within Pf6N2E2_4824 at 5579.524 kb on - strand, within Pf6N2E2_4824 at 5579.578 kb on - strand, within Pf6N2E2_4824 at 5579.710 kb on - strand, within Pf6N2E2_4824 at 5579.739 kb on + strand, within Pf6N2E2_4824 at 5579.739 kb on + strand, within Pf6N2E2_4824 at 5579.739 kb on + strand, within Pf6N2E2_4824 at 5579.739 kb on + strand, within Pf6N2E2_4824 at 5579.739 kb on + strand, within Pf6N2E2_4824 at 5579.740 kb on - strand, within Pf6N2E2_4824 at 5579.740 kb on - strand, within Pf6N2E2_4824 at 5579.820 kb on + strand at 5580.081 kb on + strand, within Pf6N2E2_4825 at 5580.081 kb on + strand, within Pf6N2E2_4825 at 5580.208 kb on + strand, within Pf6N2E2_4825 at 5580.208 kb on + strand, within Pf6N2E2_4825 at 5580.208 kb on + strand, within Pf6N2E2_4825 at 5580.208 kb on + strand, within Pf6N2E2_4825 at 5580.209 kb on - strand, within Pf6N2E2_4825 at 5580.209 kb on - strand, within Pf6N2E2_4825 at 5580.243 kb on + strand, within Pf6N2E2_4825 at 5580.288 kb on + strand, within Pf6N2E2_4825 at 5580.363 kb on + strand, within Pf6N2E2_4825 at 5580.363 kb on + strand, within Pf6N2E2_4825 at 5580.363 kb on + strand, within Pf6N2E2_4825 at 5580.392 kb on + strand, within Pf6N2E2_4825 at 5580.393 kb on - strand, within Pf6N2E2_4825 at 5580.516 kb on + strand, within Pf6N2E2_4825 at 5580.517 kb on - strand, within Pf6N2E2_4825 at 5580.517 kb on - strand, within Pf6N2E2_4825 at 5580.517 kb on - strand, within Pf6N2E2_4825 at 5580.517 kb on - strand, within Pf6N2E2_4825 at 5580.556 kb on + strand, within Pf6N2E2_4825 at 5580.582 kb on + strand, within Pf6N2E2_4825 at 5580.728 kb on - strand, within Pf6N2E2_4825 at 5580.728 kb on - strand, within Pf6N2E2_4825 at 5580.831 kb on + strand at 5580.831 kb on + strand at 5580.831 kb on + strand at 5580.831 kb on + strand at 5580.831 kb on + strand at 5580.832 kb on - strand at 5580.832 kb on - strand at 5580.839 kb on + strand at 5580.839 kb on + strand at 5580.840 kb on - strand at 5580.966 kb on - strand, within Pf6N2E2_4826 at 5581.113 kb on + strand, within Pf6N2E2_4826 at 5581.130 kb on + strand, within Pf6N2E2_4826 at 5581.130 kb on + strand, within Pf6N2E2_4826 at 5581.130 kb on + strand, within Pf6N2E2_4826 at 5581.182 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826 at 5581.584 kb on + strand, within Pf6N2E2_4826
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,578,816 + +0.0 5,578,817 - -0.2 5,578,822 - -1.3 5,578,849 - +0.6 5,578,921 + +0.3 5,578,922 - +0.6 5,578,941 + -0.1 5,578,941 + +1.8 5,578,941 + +0.3 5,578,942 - +3.6 5,578,942 - +2.9 5,578,942 - +2.9 5,578,942 - +2.6 5,578,942 - +1.3 5,578,942 - +2.4 5,578,942 - +3.6 5,578,946 + +0.3 5,578,946 + -0.0 5,578,946 + +0.1 5,578,947 - +2.8 5,578,947 - +2.0 5,578,947 - +2.4 5,578,947 - +2.0 5,578,961 + -0.2 5,578,962 - +2.2 5,578,962 - +2.1 5,578,962 - +2.0 5,579,104 + -2.7 5,579,104 + -0.2 5,579,105 - +0.7 5,579,179 + -0.0 5,579,179 + +0.3 5,579,179 + +1.3 5,579,179 + -0.1 5,579,180 - +3.4 5,579,197 + +1.1 5,579,197 + +3.0 5,579,197 + +0.6 5,579,198 - +0.6 5,579,198 - +0.9 5,579,198 - +0.7 5,579,233 + +1.7 5,579,233 + +0.9 5,579,233 + +2.8 5,579,233 + +0.0 5,579,233 + -0.1 5,579,233 + +1.9 5,579,234 - +0.0 5,579,234 - +0.0 5,579,234 - +1.1 5,579,234 - +0.0 5,579,234 - -2.1 5,579,234 - +1.4 5,579,234 - -2.1 5,579,244 + +0.5 5,579,245 - +0.8 5,579,248 + -0.0 5,579,248 + -0.3 5,579,249 - -0.6 5,579,249 - -2.1 5,579,263 + +0.1 5,579,413 + Pf6N2E2_4824 0.34 +1.3 5,579,413 + Pf6N2E2_4824 0.34 +0.6 5,579,413 + Pf6N2E2_4824 0.34 +1.5 5,579,493 - Pf6N2E2_4824 0.47 -0.9 5,579,518 - Pf6N2E2_4824 0.52 -1.2 5,579,523 + Pf6N2E2_4824 0.52 +0.2 5,579,523 + Pf6N2E2_4824 0.52 +0.2 5,579,523 + Pf6N2E2_4824 0.52 -0.1 5,579,524 - Pf6N2E2_4824 0.53 -0.6 5,579,524 - Pf6N2E2_4824 0.53 -0.4 5,579,578 - Pf6N2E2_4824 0.62 -2.6 5,579,710 - Pf6N2E2_4824 0.84 -1.1 5,579,739 + Pf6N2E2_4824 0.89 +0.3 5,579,739 + Pf6N2E2_4824 0.89 -0.2 5,579,739 + Pf6N2E2_4824 0.89 -1.0 5,579,739 + Pf6N2E2_4824 0.89 +0.8 5,579,739 + Pf6N2E2_4824 0.89 -0.4 5,579,740 - Pf6N2E2_4824 0.89 -1.6 5,579,740 - Pf6N2E2_4824 0.89 -1.3 5,579,820 + -0.0 5,580,081 + Pf6N2E2_4825 0.25 -2.2 5,580,081 + Pf6N2E2_4825 0.25 -0.3 5,580,208 + Pf6N2E2_4825 0.37 -2.9 5,580,208 + Pf6N2E2_4825 0.37 -2.8 5,580,208 + Pf6N2E2_4825 0.37 -1.1 5,580,208 + Pf6N2E2_4825 0.37 -2.2 5,580,209 - Pf6N2E2_4825 0.38 -1.3 5,580,209 - Pf6N2E2_4825 0.38 -1.9 5,580,243 + Pf6N2E2_4825 0.41 -3.7 5,580,288 + Pf6N2E2_4825 0.45 -1.8 5,580,363 + Pf6N2E2_4825 0.52 -1.8 5,580,363 + Pf6N2E2_4825 0.52 -1.2 5,580,363 + Pf6N2E2_4825 0.52 -3.5 5,580,392 + Pf6N2E2_4825 0.55 -3.3 5,580,393 - Pf6N2E2_4825 0.55 -1.2 5,580,516 + Pf6N2E2_4825 0.67 -2.8 5,580,517 - Pf6N2E2_4825 0.67 -2.6 5,580,517 - Pf6N2E2_4825 0.67 -2.6 5,580,517 - Pf6N2E2_4825 0.67 -2.7 5,580,517 - Pf6N2E2_4825 0.67 -1.9 5,580,556 + Pf6N2E2_4825 0.71 -3.3 5,580,582 + Pf6N2E2_4825 0.73 -3.3 5,580,728 - Pf6N2E2_4825 0.87 -2.2 5,580,728 - Pf6N2E2_4825 0.87 -2.1 5,580,831 + -1.6 5,580,831 + -1.5 5,580,831 + -0.5 5,580,831 + -2.0 5,580,831 + -2.0 5,580,832 - -2.4 5,580,832 - -2.2 5,580,839 + +1.2 5,580,839 + +1.5 5,580,840 - -0.8 5,580,966 - Pf6N2E2_4826 0.13 -0.7 5,581,113 + Pf6N2E2_4826 0.30 -2.0 5,581,130 + Pf6N2E2_4826 0.32 -2.8 5,581,130 + Pf6N2E2_4826 0.32 -1.8 5,581,130 + Pf6N2E2_4826 0.32 -1.1 5,581,182 + Pf6N2E2_4826 0.38 -2.7 5,581,584 + Pf6N2E2_4826 0.86 -3.3 5,581,584 + Pf6N2E2_4826 0.86 -1.4 5,581,584 + Pf6N2E2_4826 0.86 -1.3 5,581,584 + Pf6N2E2_4826 0.86 -3.2 5,581,584 + Pf6N2E2_4826 0.86 -1.6 5,581,584 + Pf6N2E2_4826 0.86 -3.2 5,581,584 + Pf6N2E2_4826 0.86 -2.1 5,581,584 + Pf6N2E2_4826 0.86 -1.5 5,581,584 + Pf6N2E2_4826 0.86 -2.8
Or see this region's nucleotide sequence