Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4638

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4636 and Pf6N2E2_4637 are separated by 106 nucleotidesPf6N2E2_4637 and Pf6N2E2_4638 are separated by 11 nucleotidesPf6N2E2_4638 and Pf6N2E2_4639 are separated by 167 nucleotides Pf6N2E2_4636 - periplasmic binding protein, putative, at 5,366,863 to 5,367,588 _4636 Pf6N2E2_4637 - hypothetical protein, at 5,367,695 to 5,367,838 _4637 Pf6N2E2_4638 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 5,367,850 to 5,368,695 _4638 Pf6N2E2_4639 - Adenosylhomocysteinase (EC 3.3.1.1), at 5,368,863 to 5,370,272 _4639 Position (kb) 5367 5368 5369Strain fitness (log2 ratio) -2 -1 0 1 2at 5366.859 kb on + strandat 5366.859 kb on + strandat 5366.860 kb on - strandat 5366.936 kb on + strand, within Pf6N2E2_4636at 5367.023 kb on + strand, within Pf6N2E2_4636at 5367.023 kb on + strand, within Pf6N2E2_4636at 5367.222 kb on - strand, within Pf6N2E2_4636at 5367.303 kb on - strand, within Pf6N2E2_4636at 5367.319 kb on + strand, within Pf6N2E2_4636at 5367.319 kb on + strand, within Pf6N2E2_4636at 5367.319 kb on + strand, within Pf6N2E2_4636at 5367.320 kb on - strand, within Pf6N2E2_4636at 5367.320 kb on - strand, within Pf6N2E2_4636at 5367.320 kb on - strand, within Pf6N2E2_4636at 5367.320 kb on - strand, within Pf6N2E2_4636at 5367.497 kb on + strand, within Pf6N2E2_4636at 5367.497 kb on + strand, within Pf6N2E2_4636at 5367.498 kb on - strand, within Pf6N2E2_4636at 5367.498 kb on - strand, within Pf6N2E2_4636at 5367.530 kb on + strandat 5367.531 kb on - strandat 5367.531 kb on - strandat 5367.536 kb on + strandat 5367.537 kb on - strandat 5367.537 kb on - strandat 5367.537 kb on - strandat 5367.537 kb on - strandat 5367.670 kb on + strandat 5367.670 kb on + strandat 5367.670 kb on + strandat 5367.671 kb on - strandat 5367.671 kb on - strandat 5367.671 kb on - strandat 5367.671 kb on - strandat 5367.674 kb on + strandat 5367.674 kb on + strandat 5367.674 kb on + strandat 5367.674 kb on + strandat 5367.675 kb on - strandat 5367.675 kb on - strandat 5367.675 kb on - strandat 5367.675 kb on - strandat 5367.696 kb on + strandat 5367.696 kb on + strandat 5367.697 kb on - strandat 5367.707 kb on + strandat 5367.708 kb on - strandat 5367.708 kb on - strandat 5367.833 kb on + strandat 5367.833 kb on + strandat 5367.834 kb on - strandat 5367.842 kb on - strandat 5367.910 kb on - strandat 5367.911 kb on + strandat 5367.912 kb on - strandat 5367.912 kb on - strandat 5368.010 kb on + strand, within Pf6N2E2_4638at 5368.085 kb on + strand, within Pf6N2E2_4638at 5368.086 kb on - strand, within Pf6N2E2_4638at 5368.086 kb on - strand, within Pf6N2E2_4638at 5368.163 kb on + strand, within Pf6N2E2_4638at 5368.163 kb on + strand, within Pf6N2E2_4638at 5368.163 kb on + strand, within Pf6N2E2_4638at 5368.164 kb on - strand, within Pf6N2E2_4638at 5368.164 kb on - strand, within Pf6N2E2_4638at 5368.571 kb on + strand, within Pf6N2E2_4638at 5368.571 kb on + strand, within Pf6N2E2_4638at 5368.571 kb on + strand, within Pf6N2E2_4638at 5368.599 kb on - strand, within Pf6N2E2_4638at 5368.599 kb on - strand, within Pf6N2E2_4638at 5368.677 kb on - strandat 5368.701 kb on + strandat 5368.702 kb on - strandat 5368.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,366,859 + +0.7
5,366,859 + +0.6
5,366,860 - -0.9
5,366,936 + Pf6N2E2_4636 0.10 +0.2
5,367,023 + Pf6N2E2_4636 0.22 -1.0
5,367,023 + Pf6N2E2_4636 0.22 +0.3
5,367,222 - Pf6N2E2_4636 0.49 -0.0
5,367,303 - Pf6N2E2_4636 0.61 -0.0
5,367,319 + Pf6N2E2_4636 0.63 +0.8
5,367,319 + Pf6N2E2_4636 0.63 -0.5
5,367,319 + Pf6N2E2_4636 0.63 -1.2
5,367,320 - Pf6N2E2_4636 0.63 +1.3
5,367,320 - Pf6N2E2_4636 0.63 -1.0
5,367,320 - Pf6N2E2_4636 0.63 -0.6
5,367,320 - Pf6N2E2_4636 0.63 +0.6
5,367,497 + Pf6N2E2_4636 0.87 +1.1
5,367,497 + Pf6N2E2_4636 0.87 -0.1
5,367,498 - Pf6N2E2_4636 0.87 +0.2
5,367,498 - Pf6N2E2_4636 0.87 -2.2
5,367,530 + -0.2
5,367,531 - +0.0
5,367,531 - +0.7
5,367,536 + -0.0
5,367,537 - -0.6
5,367,537 - -1.7
5,367,537 - -0.8
5,367,537 - -0.2
5,367,670 + -0.0
5,367,670 + -1.4
5,367,670 + -1.2
5,367,671 - -0.8
5,367,671 - +0.1
5,367,671 - -0.8
5,367,671 - +0.1
5,367,674 + +0.3
5,367,674 + +0.6
5,367,674 + +1.2
5,367,674 + -0.0
5,367,675 - +0.7
5,367,675 - +0.2
5,367,675 - -1.1
5,367,675 - +0.8
5,367,696 + +0.6
5,367,696 + -0.3
5,367,697 - +1.1
5,367,707 + -1.6
5,367,708 - +0.6
5,367,708 - +0.2
5,367,833 + +0.6
5,367,833 + +1.0
5,367,834 - +1.8
5,367,842 - -0.2
5,367,910 - -1.9
5,367,911 + -1.3
5,367,912 - -0.2
5,367,912 - +1.0
5,368,010 + Pf6N2E2_4638 0.19 -0.6
5,368,085 + Pf6N2E2_4638 0.28 -1.3
5,368,086 - Pf6N2E2_4638 0.28 -0.6
5,368,086 - Pf6N2E2_4638 0.28 -1.5
5,368,163 + Pf6N2E2_4638 0.37 -0.7
5,368,163 + Pf6N2E2_4638 0.37 -0.8
5,368,163 + Pf6N2E2_4638 0.37 -0.6
5,368,164 - Pf6N2E2_4638 0.37 -0.7
5,368,164 - Pf6N2E2_4638 0.37 +0.2
5,368,571 + Pf6N2E2_4638 0.85 +0.4
5,368,571 + Pf6N2E2_4638 0.85 -0.2
5,368,571 + Pf6N2E2_4638 0.85 -0.8
5,368,599 - Pf6N2E2_4638 0.89 -0.4
5,368,599 - Pf6N2E2_4638 0.89 +0.8
5,368,677 - -1.8
5,368,701 + -0.7
5,368,702 - +0.6
5,368,718 - -0.7

Or see this region's nucleotide sequence