Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_448 and Pf6N2E2_449 are separated by 87 nucleotides Pf6N2E2_449 and Pf6N2E2_450 are separated by 194 nucleotides Pf6N2E2_450 and Pf6N2E2_451 are separated by 110 nucleotides
Pf6N2E2_448 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 510,388 to 511,950
_448
Pf6N2E2_449 - Lactoylglutathione lyase (EC 4.4.1.5), at 512,038 to 512,559
_449
Pf6N2E2_450 - FIG00953950: hypothetical protein, at 512,754 to 513,281
_450
Pf6N2E2_451 - transcriptional regulator MvaT, P16 subunit, putative, at 513,392 to 513,757
_451
Position (kb)
512
513 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 511.072 kb on + strand, within Pf6N2E2_448 at 511.072 kb on + strand, within Pf6N2E2_448 at 511.072 kb on + strand, within Pf6N2E2_448 at 511.073 kb on - strand, within Pf6N2E2_448 at 511.083 kb on + strand, within Pf6N2E2_448 at 511.222 kb on + strand, within Pf6N2E2_448 at 511.391 kb on - strand, within Pf6N2E2_448 at 511.411 kb on + strand, within Pf6N2E2_448 at 511.473 kb on + strand, within Pf6N2E2_448 at 511.473 kb on + strand, within Pf6N2E2_448 at 511.608 kb on + strand, within Pf6N2E2_448 at 511.609 kb on - strand, within Pf6N2E2_448 at 511.861 kb on + strand at 511.861 kb on + strand at 511.862 kb on - strand at 511.948 kb on + strand at 512.039 kb on + strand at 512.040 kb on - strand at 512.072 kb on + strand at 512.073 kb on - strand at 512.237 kb on + strand, within Pf6N2E2_449 at 512.370 kb on - strand, within Pf6N2E2_449 at 512.370 kb on - strand, within Pf6N2E2_449 at 512.370 kb on - strand, within Pf6N2E2_449 at 512.435 kb on + strand, within Pf6N2E2_449 at 512.573 kb on - strand at 512.574 kb on + strand at 512.574 kb on + strand at 512.574 kb on + strand at 512.574 kb on + strand at 512.574 kb on + strand at 512.574 kb on + strand at 512.574 kb on + strand at 512.574 kb on + strand at 512.574 kb on + strand at 512.575 kb on - strand at 512.575 kb on - strand at 512.575 kb on - strand at 512.575 kb on - strand at 512.575 kb on - strand at 512.658 kb on + strand at 512.659 kb on - strand at 512.659 kb on - strand at 512.659 kb on - strand at 512.659 kb on - strand at 513.125 kb on + strand, within Pf6N2E2_450 at 513.125 kb on + strand, within Pf6N2E2_450 at 513.151 kb on + strand, within Pf6N2E2_450 at 513.151 kb on + strand, within Pf6N2E2_450 at 513.151 kb on + strand, within Pf6N2E2_450 at 513.151 kb on + strand, within Pf6N2E2_450 at 513.151 kb on + strand, within Pf6N2E2_450 at 513.151 kb on + strand, within Pf6N2E2_450 at 513.151 kb on + strand, within Pf6N2E2_450 at 513.151 kb on + strand, within Pf6N2E2_450 at 513.152 kb on - strand, within Pf6N2E2_450 at 513.152 kb on - strand, within Pf6N2E2_450 at 513.152 kb on - strand at 513.152 kb on - strand, within Pf6N2E2_450 at 513.152 kb on - strand, within Pf6N2E2_450 at 513.152 kb on - strand, within Pf6N2E2_450 at 513.152 kb on - strand, within Pf6N2E2_450 at 513.178 kb on + strand, within Pf6N2E2_450 at 513.179 kb on - strand, within Pf6N2E2_450 at 513.179 kb on - strand, within Pf6N2E2_450 at 513.195 kb on + strand, within Pf6N2E2_450 at 513.195 kb on + strand, within Pf6N2E2_450 at 513.195 kb on + strand, within Pf6N2E2_450 at 513.195 kb on + strand, within Pf6N2E2_450 at 513.195 kb on + strand, within Pf6N2E2_450 at 513.195 kb on + strand, within Pf6N2E2_450 at 513.196 kb on - strand, within Pf6N2E2_450 at 513.196 kb on - strand, within Pf6N2E2_450 at 513.196 kb on - strand, within Pf6N2E2_450 at 513.196 kb on - strand, within Pf6N2E2_450 at 513.196 kb on - strand, within Pf6N2E2_450 at 513.196 kb on - strand, within Pf6N2E2_450 at 513.196 kb on - strand, within Pf6N2E2_450 at 513.196 kb on - strand, within Pf6N2E2_450 at 513.208 kb on - strand, within Pf6N2E2_450 at 513.208 kb on - strand, within Pf6N2E2_450 at 513.250 kb on + strand at 513.251 kb on - strand at 513.278 kb on - strand at 513.296 kb on + strand at 513.430 kb on - strand, within Pf6N2E2_451 at 513.430 kb on - strand, within Pf6N2E2_451 at 513.516 kb on - strand, within Pf6N2E2_451
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 511,072 + Pf6N2E2_448 0.44 -0.4 511,072 + Pf6N2E2_448 0.44 -0.7 511,072 + Pf6N2E2_448 0.44 +1.3 511,073 - Pf6N2E2_448 0.44 -0.4 511,083 + Pf6N2E2_448 0.44 -0.3 511,222 + Pf6N2E2_448 0.53 -0.5 511,391 - Pf6N2E2_448 0.64 -0.2 511,411 + Pf6N2E2_448 0.65 +1.3 511,473 + Pf6N2E2_448 0.69 -0.7 511,473 + Pf6N2E2_448 0.69 +0.1 511,608 + Pf6N2E2_448 0.78 -0.3 511,609 - Pf6N2E2_448 0.78 -0.4 511,861 + -1.4 511,861 + -2.1 511,862 - +1.4 511,948 + -0.4 512,039 + +0.2 512,040 - +0.1 512,072 + +0.7 512,073 - +0.4 512,237 + Pf6N2E2_449 0.38 -0.4 512,370 - Pf6N2E2_449 0.64 -1.8 512,370 - Pf6N2E2_449 0.64 -0.9 512,370 - Pf6N2E2_449 0.64 -1.5 512,435 + Pf6N2E2_449 0.76 +0.5 512,573 - +0.6 512,574 + -0.8 512,574 + +0.1 512,574 + +1.0 512,574 + +0.3 512,574 + +0.2 512,574 + +0.2 512,574 + +0.0 512,574 + -0.1 512,574 + +1.0 512,575 - +0.1 512,575 - +1.8 512,575 - +1.0 512,575 - +2.8 512,575 - -0.9 512,658 + -0.6 512,659 - +1.4 512,659 - +1.2 512,659 - +0.4 512,659 - -1.5 513,125 + Pf6N2E2_450 0.70 -1.8 513,125 + Pf6N2E2_450 0.70 -1.1 513,151 + Pf6N2E2_450 0.75 +0.3 513,151 + Pf6N2E2_450 0.75 -0.8 513,151 + Pf6N2E2_450 0.75 -0.0 513,151 + Pf6N2E2_450 0.75 +2.2 513,151 + Pf6N2E2_450 0.75 -0.8 513,151 + Pf6N2E2_450 0.75 +0.6 513,151 + Pf6N2E2_450 0.75 +1.3 513,151 + Pf6N2E2_450 0.75 +0.7 513,152 - Pf6N2E2_450 0.75 +1.6 513,152 - Pf6N2E2_450 0.75 +0.6 513,152 - +0.5 513,152 - Pf6N2E2_450 0.75 +2.8 513,152 - Pf6N2E2_450 0.75 -0.3 513,152 - Pf6N2E2_450 0.75 +1.0 513,152 - Pf6N2E2_450 0.75 -2.2 513,178 + Pf6N2E2_450 0.80 -0.2 513,179 - Pf6N2E2_450 0.80 +1.6 513,179 - Pf6N2E2_450 0.80 +0.7 513,195 + Pf6N2E2_450 0.84 +1.2 513,195 + Pf6N2E2_450 0.84 -1.1 513,195 + Pf6N2E2_450 0.84 +1.8 513,195 + Pf6N2E2_450 0.84 -0.5 513,195 + Pf6N2E2_450 0.84 -0.8 513,195 + Pf6N2E2_450 0.84 -0.1 513,196 - Pf6N2E2_450 0.84 +0.8 513,196 - Pf6N2E2_450 0.84 +1.5 513,196 - Pf6N2E2_450 0.84 -0.8 513,196 - Pf6N2E2_450 0.84 +0.6 513,196 - Pf6N2E2_450 0.84 +1.6 513,196 - Pf6N2E2_450 0.84 -0.6 513,196 - Pf6N2E2_450 0.84 +0.1 513,196 - Pf6N2E2_450 0.84 +1.4 513,208 - Pf6N2E2_450 0.86 +1.6 513,208 - Pf6N2E2_450 0.86 +0.1 513,250 + +0.3 513,251 - +1.3 513,278 - +0.6 513,296 + +0.6 513,430 - Pf6N2E2_451 0.10 -0.3 513,430 - Pf6N2E2_451 0.10 -0.7 513,516 - Pf6N2E2_451 0.34 +0.5
Or see this region's nucleotide sequence