Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4469

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4466 and Pf6N2E2_4467 are separated by 113 nucleotidesPf6N2E2_4467 and Pf6N2E2_4468 are separated by 107 nucleotidesPf6N2E2_4468 and Pf6N2E2_4469 are separated by 50 nucleotidesPf6N2E2_4469 and Pf6N2E2_4470 are separated by 117 nucleotidesPf6N2E2_4470 and Pf6N2E2_4471 are separated by 67 nucleotides Pf6N2E2_4466 - Glycerol-3-phosphate transporter, at 5,199,490 to 5,200,839 _4466 Pf6N2E2_4467 - hypothetical protein, at 5,200,953 to 5,201,069 _4467 Pf6N2E2_4468 - Periplasmic protein TonB, links inner and outer membranes, at 5,201,177 to 5,201,767 _4468 Pf6N2E2_4469 - Quinone oxidoreductase (EC 1.6.5.5), at 5,201,818 to 5,202,795 _4469 Pf6N2E2_4470 - Flagellar biosynthesis protein FliL, at 5,202,913 to 5,203,362 _4470 Pf6N2E2_4471 - ABC-type multidrug transport system, permease component, at 5,203,430 to 5,204,548 _4471 Position (kb) 5201 5202 5203Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5200.861 kb on + strandat 5200.862 kb on - strandat 5200.882 kb on + strandat 5200.882 kb on + strandat 5200.883 kb on - strandat 5200.902 kb on + strandat 5200.916 kb on - strandat 5200.916 kb on - strandat 5200.916 kb on - strandat 5200.922 kb on + strandat 5200.923 kb on - strandat 5200.954 kb on + strandat 5200.955 kb on - strandat 5200.975 kb on + strand, within Pf6N2E2_4467at 5200.976 kb on - strand, within Pf6N2E2_4467at 5200.993 kb on + strand, within Pf6N2E2_4467at 5200.993 kb on + strand, within Pf6N2E2_4467at 5200.994 kb on - strand, within Pf6N2E2_4467at 5201.113 kb on + strandat 5201.120 kb on + strandat 5201.120 kb on + strandat 5201.120 kb on + strandat 5201.120 kb on + strandat 5201.120 kb on + strandat 5201.120 kb on + strandat 5201.120 kb on + strandat 5201.121 kb on - strandat 5201.121 kb on - strandat 5201.121 kb on - strandat 5201.121 kb on - strandat 5201.121 kb on - strandat 5201.259 kb on - strand, within Pf6N2E2_4468at 5201.259 kb on - strand, within Pf6N2E2_4468at 5201.591 kb on + strand, within Pf6N2E2_4468at 5201.603 kb on + strand, within Pf6N2E2_4468at 5201.603 kb on + strand, within Pf6N2E2_4468at 5201.603 kb on + strand, within Pf6N2E2_4468at 5201.603 kb on + strand, within Pf6N2E2_4468at 5201.603 kb on + strand, within Pf6N2E2_4468at 5201.603 kb on + strand, within Pf6N2E2_4468at 5201.604 kb on - strand, within Pf6N2E2_4468at 5201.604 kb on - strand, within Pf6N2E2_4468at 5201.604 kb on - strand, within Pf6N2E2_4468at 5201.604 kb on - strand, within Pf6N2E2_4468at 5201.604 kb on - strand, within Pf6N2E2_4468at 5201.604 kb on - strand, within Pf6N2E2_4468at 5201.687 kb on - strand, within Pf6N2E2_4468at 5201.687 kb on - strand, within Pf6N2E2_4468at 5201.727 kb on - strandat 5201.727 kb on - strandat 5201.727 kb on - strandat 5201.765 kb on + strandat 5201.766 kb on - strandat 5201.778 kb on + strandat 5201.901 kb on - strandat 5201.901 kb on - strandat 5202.159 kb on - strand, within Pf6N2E2_4469at 5202.159 kb on - strand, within Pf6N2E2_4469at 5202.224 kb on + strand, within Pf6N2E2_4469at 5202.225 kb on - strand, within Pf6N2E2_4469at 5202.225 kb on - strand, within Pf6N2E2_4469at 5202.425 kb on + strand, within Pf6N2E2_4469at 5202.425 kb on + strand, within Pf6N2E2_4469at 5202.425 kb on + strand, within Pf6N2E2_4469at 5202.425 kb on + strand, within Pf6N2E2_4469at 5202.425 kb on + strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.488 kb on + strand, within Pf6N2E2_4469at 5202.644 kb on + strand, within Pf6N2E2_4469at 5202.644 kb on + strand, within Pf6N2E2_4469at 5202.644 kb on + strand, within Pf6N2E2_4469at 5202.644 kb on + strand, within Pf6N2E2_4469at 5202.645 kb on - strand, within Pf6N2E2_4469at 5202.645 kb on - strand, within Pf6N2E2_4469at 5202.645 kb on - strand, within Pf6N2E2_4469at 5202.802 kb on + strandat 5202.803 kb on - strandat 5202.826 kb on + strandat 5202.826 kb on + strandat 5202.827 kb on - strandat 5202.832 kb on + strandat 5202.832 kb on + strandat 5202.832 kb on + strandat 5202.832 kb on + strandat 5202.832 kb on + strandat 5202.832 kb on + strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.883 kb on + strandat 5202.883 kb on + strandat 5202.884 kb on - strandat 5202.884 kb on - strandat 5202.885 kb on + strandat 5202.885 kb on + strandat 5202.885 kb on + strandat 5202.885 kb on + strandat 5202.886 kb on - strandat 5202.886 kb on - strandat 5202.886 kb on - strandat 5202.886 kb on - strandat 5202.886 kb on - strandat 5202.913 kb on - strandat 5203.044 kb on + strand, within Pf6N2E2_4470at 5203.045 kb on - strand, within Pf6N2E2_4470at 5203.045 kb on - strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.081 kb on + strand, within Pf6N2E2_4470at 5203.081 kb on + strand, within Pf6N2E2_4470at 5203.081 kb on + strand, within Pf6N2E2_4470at 5203.081 kb on + strand, within Pf6N2E2_4470at 5203.081 kb on + strand, within Pf6N2E2_4470at 5203.082 kb on - strand, within Pf6N2E2_4470at 5203.082 kb on - strand, within Pf6N2E2_4470at 5203.082 kb on - strand, within Pf6N2E2_4470at 5203.082 kb on - strand, within Pf6N2E2_4470at 5203.114 kb on + strand, within Pf6N2E2_4470at 5203.114 kb on + strand, within Pf6N2E2_4470at 5203.114 kb on + strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.569 kb on + strand, within Pf6N2E2_4471at 5203.569 kb on + strand, within Pf6N2E2_4471at 5203.569 kb on + strand, within Pf6N2E2_4471at 5203.569 kb on + strand, within Pf6N2E2_4471at 5203.569 kb on + strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.633 kb on + strand, within Pf6N2E2_4471at 5203.752 kb on + strand, within Pf6N2E2_4471at 5203.752 kb on + strand, within Pf6N2E2_4471at 5203.752 kb on + strand, within Pf6N2E2_4471at 5203.752 kb on + strand, within Pf6N2E2_4471at 5203.752 kb on + strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,200,861 + +0.6
5,200,862 - -0.5
5,200,882 + +0.4
5,200,882 + -1.5
5,200,883 - +0.0
5,200,902 + -0.1
5,200,916 - +0.4
5,200,916 - -0.6
5,200,916 - +3.4
5,200,922 + +1.2
5,200,923 - -0.1
5,200,954 + +0.2
5,200,955 - +1.4
5,200,975 + Pf6N2E2_4467 0.19 +0.6
5,200,976 - Pf6N2E2_4467 0.20 -0.3
5,200,993 + Pf6N2E2_4467 0.34 -0.3
5,200,993 + Pf6N2E2_4467 0.34 -1.5
5,200,994 - Pf6N2E2_4467 0.35 +0.2
5,201,113 + +0.8
5,201,120 + -1.2
5,201,120 + -0.4
5,201,120 + -0.5
5,201,120 + -1.4
5,201,120 + -0.0
5,201,120 + +0.1
5,201,120 + -0.0
5,201,121 - -0.2
5,201,121 - -2.3
5,201,121 - +0.0
5,201,121 - -0.4
5,201,121 - -0.1
5,201,259 - Pf6N2E2_4468 0.14 -0.0
5,201,259 - Pf6N2E2_4468 0.14 -1.8
5,201,591 + Pf6N2E2_4468 0.70 +0.8
5,201,603 + Pf6N2E2_4468 0.72 -0.3
5,201,603 + Pf6N2E2_4468 0.72 +0.2
5,201,603 + Pf6N2E2_4468 0.72 +0.6
5,201,603 + Pf6N2E2_4468 0.72 -0.7
5,201,603 + Pf6N2E2_4468 0.72 -2.4
5,201,603 + Pf6N2E2_4468 0.72 -0.3
5,201,604 - Pf6N2E2_4468 0.72 -0.1
5,201,604 - Pf6N2E2_4468 0.72 +0.4
5,201,604 - Pf6N2E2_4468 0.72 +0.4
5,201,604 - Pf6N2E2_4468 0.72 +0.7
5,201,604 - Pf6N2E2_4468 0.72 -0.2
5,201,604 - Pf6N2E2_4468 0.72 -0.6
5,201,687 - Pf6N2E2_4468 0.86 +0.0
5,201,687 - Pf6N2E2_4468 0.86 -0.1
5,201,727 - +0.7
5,201,727 - +0.7
5,201,727 - -0.2
5,201,765 + -0.6
5,201,766 - +0.9
5,201,778 + -1.3
5,201,901 - -0.6
5,201,901 - -0.1
5,202,159 - Pf6N2E2_4469 0.35 +1.1
5,202,159 - Pf6N2E2_4469 0.35 +1.1
5,202,224 + Pf6N2E2_4469 0.42 -1.3
5,202,225 - Pf6N2E2_4469 0.42 -0.6
5,202,225 - Pf6N2E2_4469 0.42 +0.5
5,202,425 + Pf6N2E2_4469 0.62 -0.7
5,202,425 + Pf6N2E2_4469 0.62 -0.3
5,202,425 + Pf6N2E2_4469 0.62 -0.2
5,202,425 + Pf6N2E2_4469 0.62 -0.8
5,202,425 + Pf6N2E2_4469 0.62 -2.0
5,202,426 - Pf6N2E2_4469 0.62 +0.2
5,202,426 - Pf6N2E2_4469 0.62 -1.6
5,202,426 - Pf6N2E2_4469 0.62 -1.2
5,202,426 - Pf6N2E2_4469 0.62 -0.6
5,202,426 - Pf6N2E2_4469 0.62 -1.5
5,202,426 - Pf6N2E2_4469 0.62 +0.7
5,202,426 - Pf6N2E2_4469 0.62 -1.1
5,202,426 - Pf6N2E2_4469 0.62 -0.8
5,202,488 + Pf6N2E2_4469 0.69 -0.0
5,202,644 + Pf6N2E2_4469 0.84 +0.5
5,202,644 + Pf6N2E2_4469 0.84 -0.3
5,202,644 + Pf6N2E2_4469 0.84 -1.4
5,202,644 + Pf6N2E2_4469 0.84 +0.9
5,202,645 - Pf6N2E2_4469 0.85 +0.3
5,202,645 - Pf6N2E2_4469 0.85 +0.4
5,202,645 - Pf6N2E2_4469 0.85 +0.7
5,202,802 + -0.9
5,202,803 - +0.1
5,202,826 + +0.5
5,202,826 + -2.1
5,202,827 - +0.4
5,202,832 + +0.2
5,202,832 + +0.2
5,202,832 + -0.2
5,202,832 + +0.6
5,202,832 + -0.6
5,202,832 + -0.7
5,202,833 - -0.3
5,202,833 - +0.1
5,202,833 - -0.0
5,202,833 - +0.2
5,202,833 - -0.1
5,202,833 - +0.0
5,202,833 - +0.4
5,202,833 - +1.6
5,202,883 + -2.4
5,202,883 + -0.9
5,202,884 - -0.3
5,202,884 - +1.5
5,202,885 + +0.6
5,202,885 + -1.5
5,202,885 + -0.1
5,202,885 + +1.4
5,202,886 - +0.1
5,202,886 - +0.6
5,202,886 - -0.2
5,202,886 - +0.4
5,202,886 - +0.1
5,202,913 - +1.6
5,203,044 + Pf6N2E2_4470 0.29 -0.3
5,203,045 - Pf6N2E2_4470 0.29 +0.0
5,203,045 - Pf6N2E2_4470 0.29 +0.3
5,203,048 + Pf6N2E2_4470 0.30 -0.5
5,203,048 + Pf6N2E2_4470 0.30 +0.3
5,203,048 + Pf6N2E2_4470 0.30 -1.1
5,203,048 + Pf6N2E2_4470 0.30 +0.1
5,203,048 + Pf6N2E2_4470 0.30 -0.8
5,203,048 + Pf6N2E2_4470 0.30 -0.8
5,203,048 + Pf6N2E2_4470 0.30 -0.1
5,203,048 + Pf6N2E2_4470 0.30 -1.0
5,203,048 + Pf6N2E2_4470 0.30 -0.1
5,203,048 + Pf6N2E2_4470 0.30 -1.0
5,203,048 + Pf6N2E2_4470 0.30 +0.2
5,203,049 - Pf6N2E2_4470 0.30 -0.2
5,203,049 - Pf6N2E2_4470 0.30 -0.4
5,203,049 - Pf6N2E2_4470 0.30 +1.6
5,203,049 - Pf6N2E2_4470 0.30 +0.1
5,203,049 - Pf6N2E2_4470 0.30 -0.8
5,203,049 - Pf6N2E2_4470 0.30 -0.5
5,203,049 - Pf6N2E2_4470 0.30 +1.0
5,203,049 - Pf6N2E2_4470 0.30 +2.6
5,203,049 - Pf6N2E2_4470 0.30 -0.3
5,203,049 - Pf6N2E2_4470 0.30 +1.0
5,203,081 + Pf6N2E2_4470 0.37 -3.0
5,203,081 + Pf6N2E2_4470 0.37 -0.1
5,203,081 + Pf6N2E2_4470 0.37 +0.0
5,203,081 + Pf6N2E2_4470 0.37 +0.4
5,203,081 + Pf6N2E2_4470 0.37 -1.2
5,203,082 - Pf6N2E2_4470 0.38 +0.2
5,203,082 - Pf6N2E2_4470 0.38 -0.4
5,203,082 - Pf6N2E2_4470 0.38 -0.1
5,203,082 - Pf6N2E2_4470 0.38 +0.7
5,203,114 + Pf6N2E2_4470 0.45 -0.3
5,203,114 + Pf6N2E2_4470 0.45 +1.7
5,203,114 + Pf6N2E2_4470 0.45 -1.0
5,203,115 - Pf6N2E2_4470 0.45 -0.2
5,203,115 - Pf6N2E2_4470 0.45 +1.6
5,203,115 - Pf6N2E2_4470 0.45 +0.9
5,203,115 - Pf6N2E2_4470 0.45 +0.5
5,203,115 - Pf6N2E2_4470 0.45 -0.2
5,203,115 - Pf6N2E2_4470 0.45 -0.5
5,203,569 + Pf6N2E2_4471 0.12 +0.8
5,203,569 + Pf6N2E2_4471 0.12 +1.5
5,203,569 + Pf6N2E2_4471 0.12 +0.1
5,203,569 + Pf6N2E2_4471 0.12 +0.2
5,203,569 + Pf6N2E2_4471 0.12 -2.1
5,203,570 - Pf6N2E2_4471 0.13 +1.0
5,203,570 - Pf6N2E2_4471 0.13 -0.7
5,203,570 - Pf6N2E2_4471 0.13 -1.1
5,203,570 - Pf6N2E2_4471 0.13 -0.6
5,203,570 - Pf6N2E2_4471 0.13 +0.3
5,203,570 - Pf6N2E2_4471 0.13 +0.4
5,203,570 - Pf6N2E2_4471 0.13 -0.4
5,203,570 - Pf6N2E2_4471 0.13 -0.6
5,203,570 - Pf6N2E2_4471 0.13 -0.9
5,203,633 + Pf6N2E2_4471 0.18 +4.0
5,203,752 + Pf6N2E2_4471 0.29 +1.3
5,203,752 + Pf6N2E2_4471 0.29 +0.5
5,203,752 + Pf6N2E2_4471 0.29 -1.1
5,203,752 + Pf6N2E2_4471 0.29 -0.4
5,203,752 + Pf6N2E2_4471 0.29 +0.3
5,203,753 - Pf6N2E2_4471 0.29 +1.4
5,203,753 - Pf6N2E2_4471 0.29 -0.8
5,203,753 - Pf6N2E2_4471 0.29 +0.2
5,203,753 - Pf6N2E2_4471 0.29 +0.0
5,203,753 - Pf6N2E2_4471 0.29 +1.6
5,203,753 - Pf6N2E2_4471 0.29 +1.1

Or see this region's nucleotide sequence