Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4429 and Pf6N2E2_4430 are separated by 461 nucleotides Pf6N2E2_4430 and Pf6N2E2_4431 are separated by 137 nucleotides
Pf6N2E2_4429 - Argininosuccinate lyase (EC 4.3.2.1), at 5,159,615 to 5,161,009
_4429
Pf6N2E2_4430 - Autolysis response regulater LytR, at 5,161,471 to 5,162,217
_4430
Pf6N2E2_4431 - Porphobilinogen deaminase (EC 2.5.1.61), at 5,162,355 to 5,163,296
_4431
Position (kb)
5161
5162
5163 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 5161.067 kb on - strand at 5161.067 kb on - strand at 5161.154 kb on - strand at 5161.190 kb on + strand at 5161.191 kb on - strand at 5161.202 kb on + strand at 5161.202 kb on + strand at 5161.203 kb on - strand at 5161.203 kb on - strand at 5161.239 kb on - strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.240 kb on + strand at 5161.241 kb on - strand at 5161.241 kb on - strand at 5161.241 kb on - strand at 5161.241 kb on - strand at 5161.241 kb on - strand at 5161.241 kb on - strand at 5161.241 kb on - strand at 5161.241 kb on - strand at 5161.244 kb on + strand at 5161.244 kb on + strand at 5161.244 kb on + strand at 5161.244 kb on + strand at 5161.244 kb on + strand at 5161.244 kb on + strand at 5161.244 kb on + strand at 5161.244 kb on + strand at 5161.244 kb on + strand at 5161.244 kb on + strand at 5161.245 kb on - strand at 5161.245 kb on - strand at 5161.245 kb on - strand at 5161.245 kb on - strand at 5161.245 kb on - strand at 5161.245 kb on - strand at 5161.245 kb on - strand at 5161.261 kb on - strand at 5161.261 kb on - strand at 5161.279 kb on + strand at 5161.279 kb on + strand at 5161.279 kb on + strand at 5161.279 kb on + strand at 5161.279 kb on + strand at 5161.280 kb on - strand at 5161.280 kb on - strand at 5161.280 kb on - strand at 5161.280 kb on - strand at 5161.280 kb on - strand at 5161.280 kb on - strand at 5161.280 kb on - strand at 5161.347 kb on + strand at 5161.390 kb on + strand at 5161.390 kb on + strand at 5161.428 kb on + strand at 5161.428 kb on + strand at 5161.428 kb on + strand at 5161.470 kb on + strand at 5161.471 kb on - strand at 5161.471 kb on - strand at 5161.546 kb on + strand, within Pf6N2E2_4430 at 5161.546 kb on + strand, within Pf6N2E2_4430 at 5161.547 kb on - strand, within Pf6N2E2_4430 at 5161.618 kb on - strand, within Pf6N2E2_4430 at 5161.658 kb on + strand, within Pf6N2E2_4430 at 5161.658 kb on + strand, within Pf6N2E2_4430 at 5161.658 kb on + strand, within Pf6N2E2_4430 at 5161.658 kb on + strand, within Pf6N2E2_4430 at 5161.659 kb on - strand, within Pf6N2E2_4430 at 5161.713 kb on + strand, within Pf6N2E2_4430 at 5161.714 kb on - strand, within Pf6N2E2_4430 at 5161.714 kb on - strand, within Pf6N2E2_4430 at 5161.765 kb on + strand, within Pf6N2E2_4430 at 5161.893 kb on + strand, within Pf6N2E2_4430 at 5161.894 kb on - strand, within Pf6N2E2_4430 at 5161.948 kb on + strand, within Pf6N2E2_4430 at 5161.948 kb on + strand, within Pf6N2E2_4430 at 5161.948 kb on + strand, within Pf6N2E2_4430 at 5161.948 kb on + strand, within Pf6N2E2_4430 at 5161.948 kb on + strand, within Pf6N2E2_4430 at 5161.949 kb on - strand, within Pf6N2E2_4430 at 5161.949 kb on - strand, within Pf6N2E2_4430 at 5161.949 kb on - strand, within Pf6N2E2_4430 at 5161.969 kb on + strand, within Pf6N2E2_4430 at 5161.969 kb on + strand, within Pf6N2E2_4430 at 5161.969 kb on + strand, within Pf6N2E2_4430 at 5161.969 kb on + strand, within Pf6N2E2_4430 at 5161.969 kb on + strand, within Pf6N2E2_4430 at 5161.969 kb on + strand, within Pf6N2E2_4430 at 5161.969 kb on + strand, within Pf6N2E2_4430 at 5161.969 kb on + strand, within Pf6N2E2_4430 at 5161.969 kb on + strand, within Pf6N2E2_4430 at 5161.970 kb on - strand, within Pf6N2E2_4430 at 5161.970 kb on - strand, within Pf6N2E2_4430 at 5161.970 kb on - strand, within Pf6N2E2_4430 at 5161.970 kb on - strand, within Pf6N2E2_4430 at 5161.970 kb on - strand, within Pf6N2E2_4430 at 5161.970 kb on - strand, within Pf6N2E2_4430 at 5161.970 kb on - strand, within Pf6N2E2_4430 at 5162.215 kb on + strand at 5162.215 kb on + strand at 5162.215 kb on + strand at 5162.278 kb on + strand at 5162.319 kb on + strand at 5162.319 kb on + strand at 5162.331 kb on + strand at 5162.338 kb on + strand at 5162.342 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,161,067 - +0.7 5,161,067 - +0.3 5,161,154 - +0.6 5,161,190 + +0.0 5,161,191 - +0.7 5,161,202 + -0.2 5,161,202 + +0.6 5,161,203 - +0.1 5,161,203 - +0.8 5,161,239 - +1.4 5,161,240 + +0.3 5,161,240 + -1.9 5,161,240 + +0.5 5,161,240 + -0.6 5,161,240 + -0.6 5,161,240 + -0.5 5,161,240 + -1.5 5,161,240 + -0.8 5,161,240 + -0.3 5,161,240 + -1.1 5,161,240 + -0.6 5,161,240 + -1.8 5,161,240 + +0.5 5,161,240 + -1.8 5,161,241 - +0.8 5,161,241 - +1.2 5,161,241 - -0.7 5,161,241 - -0.6 5,161,241 - +0.2 5,161,241 - +0.5 5,161,241 - +0.5 5,161,241 - -0.3 5,161,244 + +0.5 5,161,244 + -2.4 5,161,244 + +0.3 5,161,244 + -1.0 5,161,244 + -0.1 5,161,244 + +0.1 5,161,244 + -0.9 5,161,244 + +4.0 5,161,244 + -0.3 5,161,244 + +0.3 5,161,245 - -0.3 5,161,245 - -0.0 5,161,245 - +0.7 5,161,245 - -0.2 5,161,245 - +1.4 5,161,245 - +0.6 5,161,245 - +0.5 5,161,261 - +0.3 5,161,261 - +0.6 5,161,279 + +0.7 5,161,279 + +0.1 5,161,279 + -0.5 5,161,279 + +0.2 5,161,279 + -0.6 5,161,280 - +0.5 5,161,280 - +1.1 5,161,280 - +0.1 5,161,280 - -0.2 5,161,280 - +2.8 5,161,280 - -0.3 5,161,280 - +0.7 5,161,347 + -1.6 5,161,390 + -0.0 5,161,390 + +1.3 5,161,428 + +0.2 5,161,428 + +0.9 5,161,428 + -0.7 5,161,470 + +0.6 5,161,471 - +2.5 5,161,471 - +1.9 5,161,546 + Pf6N2E2_4430 0.10 +1.2 5,161,546 + Pf6N2E2_4430 0.10 +0.9 5,161,547 - Pf6N2E2_4430 0.10 +2.0 5,161,618 - Pf6N2E2_4430 0.20 +2.1 5,161,658 + Pf6N2E2_4430 0.25 +1.2 5,161,658 + Pf6N2E2_4430 0.25 +1.0 5,161,658 + Pf6N2E2_4430 0.25 +1.1 5,161,658 + Pf6N2E2_4430 0.25 +1.8 5,161,659 - Pf6N2E2_4430 0.25 +1.2 5,161,713 + Pf6N2E2_4430 0.32 +1.8 5,161,714 - Pf6N2E2_4430 0.33 +1.2 5,161,714 - Pf6N2E2_4430 0.33 +1.4 5,161,765 + Pf6N2E2_4430 0.39 +0.8 5,161,893 + Pf6N2E2_4430 0.56 +1.8 5,161,894 - Pf6N2E2_4430 0.57 +1.8 5,161,948 + Pf6N2E2_4430 0.64 +1.6 5,161,948 + Pf6N2E2_4430 0.64 +3.0 5,161,948 + Pf6N2E2_4430 0.64 +1.7 5,161,948 + Pf6N2E2_4430 0.64 +2.5 5,161,948 + Pf6N2E2_4430 0.64 +1.5 5,161,949 - Pf6N2E2_4430 0.64 +0.9 5,161,949 - Pf6N2E2_4430 0.64 +0.3 5,161,949 - Pf6N2E2_4430 0.64 +2.2 5,161,969 + Pf6N2E2_4430 0.67 +1.4 5,161,969 + Pf6N2E2_4430 0.67 +1.2 5,161,969 + Pf6N2E2_4430 0.67 +1.1 5,161,969 + Pf6N2E2_4430 0.67 +1.5 5,161,969 + Pf6N2E2_4430 0.67 -0.2 5,161,969 + Pf6N2E2_4430 0.67 +0.7 5,161,969 + Pf6N2E2_4430 0.67 +1.8 5,161,969 + Pf6N2E2_4430 0.67 +0.7 5,161,969 + Pf6N2E2_4430 0.67 +1.8 5,161,970 - Pf6N2E2_4430 0.67 +1.1 5,161,970 - Pf6N2E2_4430 0.67 +0.6 5,161,970 - Pf6N2E2_4430 0.67 +0.9 5,161,970 - Pf6N2E2_4430 0.67 +2.1 5,161,970 - Pf6N2E2_4430 0.67 +1.9 5,161,970 - Pf6N2E2_4430 0.67 +1.0 5,161,970 - Pf6N2E2_4430 0.67 +1.8 5,162,215 + +0.2 5,162,215 + -0.9 5,162,215 + -0.3 5,162,278 + -0.6 5,162,319 + +0.4 5,162,319 + +0.1 5,162,331 + -0.3 5,162,338 + -0.1 5,162,342 + +2.4
Or see this region's nucleotide sequence