Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4430

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4429 and Pf6N2E2_4430 are separated by 461 nucleotidesPf6N2E2_4430 and Pf6N2E2_4431 are separated by 137 nucleotides Pf6N2E2_4429 - Argininosuccinate lyase (EC 4.3.2.1), at 5,159,615 to 5,161,009 _4429 Pf6N2E2_4430 - Autolysis response regulater LytR, at 5,161,471 to 5,162,217 _4430 Pf6N2E2_4431 - Porphobilinogen deaminase (EC 2.5.1.61), at 5,162,355 to 5,163,296 _4431 Position (kb) 5161 5162 5163Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5161.067 kb on - strandat 5161.067 kb on - strandat 5161.154 kb on - strandat 5161.190 kb on + strandat 5161.191 kb on - strandat 5161.202 kb on + strandat 5161.202 kb on + strandat 5161.203 kb on - strandat 5161.203 kb on - strandat 5161.239 kb on - strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.240 kb on + strandat 5161.241 kb on - strandat 5161.241 kb on - strandat 5161.241 kb on - strandat 5161.241 kb on - strandat 5161.241 kb on - strandat 5161.241 kb on - strandat 5161.241 kb on - strandat 5161.241 kb on - strandat 5161.244 kb on + strandat 5161.244 kb on + strandat 5161.244 kb on + strandat 5161.244 kb on + strandat 5161.244 kb on + strandat 5161.244 kb on + strandat 5161.244 kb on + strandat 5161.244 kb on + strandat 5161.244 kb on + strandat 5161.244 kb on + strandat 5161.245 kb on - strandat 5161.245 kb on - strandat 5161.245 kb on - strandat 5161.245 kb on - strandat 5161.245 kb on - strandat 5161.245 kb on - strandat 5161.245 kb on - strandat 5161.261 kb on - strandat 5161.261 kb on - strandat 5161.279 kb on + strandat 5161.279 kb on + strandat 5161.279 kb on + strandat 5161.279 kb on + strandat 5161.279 kb on + strandat 5161.280 kb on - strandat 5161.280 kb on - strandat 5161.280 kb on - strandat 5161.280 kb on - strandat 5161.280 kb on - strandat 5161.280 kb on - strandat 5161.280 kb on - strandat 5161.347 kb on + strandat 5161.390 kb on + strandat 5161.390 kb on + strandat 5161.428 kb on + strandat 5161.428 kb on + strandat 5161.428 kb on + strandat 5161.470 kb on + strandat 5161.471 kb on - strandat 5161.471 kb on - strandat 5161.546 kb on + strand, within Pf6N2E2_4430at 5161.546 kb on + strand, within Pf6N2E2_4430at 5161.547 kb on - strand, within Pf6N2E2_4430at 5161.618 kb on - strand, within Pf6N2E2_4430at 5161.658 kb on + strand, within Pf6N2E2_4430at 5161.658 kb on + strand, within Pf6N2E2_4430at 5161.658 kb on + strand, within Pf6N2E2_4430at 5161.658 kb on + strand, within Pf6N2E2_4430at 5161.659 kb on - strand, within Pf6N2E2_4430at 5161.713 kb on + strand, within Pf6N2E2_4430at 5161.714 kb on - strand, within Pf6N2E2_4430at 5161.714 kb on - strand, within Pf6N2E2_4430at 5161.765 kb on + strand, within Pf6N2E2_4430at 5161.893 kb on + strand, within Pf6N2E2_4430at 5161.894 kb on - strand, within Pf6N2E2_4430at 5161.948 kb on + strand, within Pf6N2E2_4430at 5161.948 kb on + strand, within Pf6N2E2_4430at 5161.948 kb on + strand, within Pf6N2E2_4430at 5161.948 kb on + strand, within Pf6N2E2_4430at 5161.948 kb on + strand, within Pf6N2E2_4430at 5161.949 kb on - strand, within Pf6N2E2_4430at 5161.949 kb on - strand, within Pf6N2E2_4430at 5161.949 kb on - strand, within Pf6N2E2_4430at 5161.969 kb on + strand, within Pf6N2E2_4430at 5161.969 kb on + strand, within Pf6N2E2_4430at 5161.969 kb on + strand, within Pf6N2E2_4430at 5161.969 kb on + strand, within Pf6N2E2_4430at 5161.969 kb on + strand, within Pf6N2E2_4430at 5161.969 kb on + strand, within Pf6N2E2_4430at 5161.969 kb on + strand, within Pf6N2E2_4430at 5161.969 kb on + strand, within Pf6N2E2_4430at 5161.969 kb on + strand, within Pf6N2E2_4430at 5161.970 kb on - strand, within Pf6N2E2_4430at 5161.970 kb on - strand, within Pf6N2E2_4430at 5161.970 kb on - strand, within Pf6N2E2_4430at 5161.970 kb on - strand, within Pf6N2E2_4430at 5161.970 kb on - strand, within Pf6N2E2_4430at 5161.970 kb on - strand, within Pf6N2E2_4430at 5161.970 kb on - strand, within Pf6N2E2_4430at 5162.215 kb on + strandat 5162.215 kb on + strandat 5162.215 kb on + strandat 5162.278 kb on + strandat 5162.319 kb on + strandat 5162.319 kb on + strandat 5162.331 kb on + strandat 5162.338 kb on + strandat 5162.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,161,067 - +0.7
5,161,067 - +0.3
5,161,154 - +0.6
5,161,190 + +0.0
5,161,191 - +0.7
5,161,202 + -0.2
5,161,202 + +0.6
5,161,203 - +0.1
5,161,203 - +0.8
5,161,239 - +1.4
5,161,240 + +0.3
5,161,240 + -1.9
5,161,240 + +0.5
5,161,240 + -0.6
5,161,240 + -0.6
5,161,240 + -0.5
5,161,240 + -1.5
5,161,240 + -0.8
5,161,240 + -0.3
5,161,240 + -1.1
5,161,240 + -0.6
5,161,240 + -1.8
5,161,240 + +0.5
5,161,240 + -1.8
5,161,241 - +0.8
5,161,241 - +1.2
5,161,241 - -0.7
5,161,241 - -0.6
5,161,241 - +0.2
5,161,241 - +0.5
5,161,241 - +0.5
5,161,241 - -0.3
5,161,244 + +0.5
5,161,244 + -2.4
5,161,244 + +0.3
5,161,244 + -1.0
5,161,244 + -0.1
5,161,244 + +0.1
5,161,244 + -0.9
5,161,244 + +4.0
5,161,244 + -0.3
5,161,244 + +0.3
5,161,245 - -0.3
5,161,245 - -0.0
5,161,245 - +0.7
5,161,245 - -0.2
5,161,245 - +1.4
5,161,245 - +0.6
5,161,245 - +0.5
5,161,261 - +0.3
5,161,261 - +0.6
5,161,279 + +0.7
5,161,279 + +0.1
5,161,279 + -0.5
5,161,279 + +0.2
5,161,279 + -0.6
5,161,280 - +0.5
5,161,280 - +1.1
5,161,280 - +0.1
5,161,280 - -0.2
5,161,280 - +2.8
5,161,280 - -0.3
5,161,280 - +0.7
5,161,347 + -1.6
5,161,390 + -0.0
5,161,390 + +1.3
5,161,428 + +0.2
5,161,428 + +0.9
5,161,428 + -0.7
5,161,470 + +0.6
5,161,471 - +2.5
5,161,471 - +1.9
5,161,546 + Pf6N2E2_4430 0.10 +1.2
5,161,546 + Pf6N2E2_4430 0.10 +0.9
5,161,547 - Pf6N2E2_4430 0.10 +2.0
5,161,618 - Pf6N2E2_4430 0.20 +2.1
5,161,658 + Pf6N2E2_4430 0.25 +1.2
5,161,658 + Pf6N2E2_4430 0.25 +1.0
5,161,658 + Pf6N2E2_4430 0.25 +1.1
5,161,658 + Pf6N2E2_4430 0.25 +1.8
5,161,659 - Pf6N2E2_4430 0.25 +1.2
5,161,713 + Pf6N2E2_4430 0.32 +1.8
5,161,714 - Pf6N2E2_4430 0.33 +1.2
5,161,714 - Pf6N2E2_4430 0.33 +1.4
5,161,765 + Pf6N2E2_4430 0.39 +0.8
5,161,893 + Pf6N2E2_4430 0.56 +1.8
5,161,894 - Pf6N2E2_4430 0.57 +1.8
5,161,948 + Pf6N2E2_4430 0.64 +1.6
5,161,948 + Pf6N2E2_4430 0.64 +3.0
5,161,948 + Pf6N2E2_4430 0.64 +1.7
5,161,948 + Pf6N2E2_4430 0.64 +2.5
5,161,948 + Pf6N2E2_4430 0.64 +1.5
5,161,949 - Pf6N2E2_4430 0.64 +0.9
5,161,949 - Pf6N2E2_4430 0.64 +0.3
5,161,949 - Pf6N2E2_4430 0.64 +2.2
5,161,969 + Pf6N2E2_4430 0.67 +1.4
5,161,969 + Pf6N2E2_4430 0.67 +1.2
5,161,969 + Pf6N2E2_4430 0.67 +1.1
5,161,969 + Pf6N2E2_4430 0.67 +1.5
5,161,969 + Pf6N2E2_4430 0.67 -0.2
5,161,969 + Pf6N2E2_4430 0.67 +0.7
5,161,969 + Pf6N2E2_4430 0.67 +1.8
5,161,969 + Pf6N2E2_4430 0.67 +0.7
5,161,969 + Pf6N2E2_4430 0.67 +1.8
5,161,970 - Pf6N2E2_4430 0.67 +1.1
5,161,970 - Pf6N2E2_4430 0.67 +0.6
5,161,970 - Pf6N2E2_4430 0.67 +0.9
5,161,970 - Pf6N2E2_4430 0.67 +2.1
5,161,970 - Pf6N2E2_4430 0.67 +1.9
5,161,970 - Pf6N2E2_4430 0.67 +1.0
5,161,970 - Pf6N2E2_4430 0.67 +1.8
5,162,215 + +0.2
5,162,215 + -0.9
5,162,215 + -0.3
5,162,278 + -0.6
5,162,319 + +0.4
5,162,319 + +0.1
5,162,331 + -0.3
5,162,338 + -0.1
5,162,342 + +2.4

Or see this region's nucleotide sequence