Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4361 and Pf6N2E2_4362 are separated by 60 nucleotides Pf6N2E2_4362 and Pf6N2E2_4363 are separated by 167 nucleotides Pf6N2E2_4363 and Pf6N2E2_4364 are separated by 10 nucleotides
Pf6N2E2_4361 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 5,090,952 to 5,093,057
_4361
Pf6N2E2_4362 - DNA-directed RNA polymerase omega subunit (EC 2.7.7.6), at 5,093,118 to 5,093,381
_4362
Pf6N2E2_4363 - Guanylate kinase (EC 2.7.4.8), at 5,093,549 to 5,094,169
_4363
Pf6N2E2_4364 - Protein YicC, at 5,094,180 to 5,095,043
_4364
Position (kb)
5093
5094 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5093.047 kb on - strand at 5093.099 kb on - strand at 5093.099 kb on - strand at 5093.099 kb on - strand at 5093.114 kb on - strand at 5093.114 kb on - strand at 5093.114 kb on - strand at 5093.114 kb on - strand at 5093.120 kb on - strand at 5093.201 kb on - strand, within Pf6N2E2_4362 at 5093.236 kb on - strand, within Pf6N2E2_4362 at 5093.239 kb on - strand, within Pf6N2E2_4362 at 5093.244 kb on - strand, within Pf6N2E2_4362 at 5093.244 kb on - strand, within Pf6N2E2_4362 at 5093.244 kb on - strand, within Pf6N2E2_4362 at 5093.244 kb on - strand, within Pf6N2E2_4362 at 5093.244 kb on - strand, within Pf6N2E2_4362 at 5093.385 kb on - strand at 5093.385 kb on - strand at 5093.508 kb on + strand at 5093.508 kb on + strand at 5093.516 kb on + strand at 5093.516 kb on + strand at 5093.516 kb on + strand at 5093.516 kb on + strand at 5093.516 kb on + strand at 5093.517 kb on - strand at 5093.517 kb on - strand at 5093.517 kb on - strand at 5093.517 kb on - strand at 5093.517 kb on - strand at 5093.570 kb on + strand at 5093.571 kb on - strand at 5093.571 kb on - strand at 5093.571 kb on - strand at 5093.571 kb on - strand at 5094.182 kb on - strand at 5094.182 kb on - strand at 5094.282 kb on - strand, within Pf6N2E2_4364 at 5094.282 kb on - strand, within Pf6N2E2_4364 at 5094.282 kb on - strand, within Pf6N2E2_4364 at 5094.282 kb on - strand, within Pf6N2E2_4364
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,093,047 - +1.9 5,093,099 - -1.2 5,093,099 - -1.0 5,093,099 - -1.0 5,093,114 - +0.6 5,093,114 - -0.7 5,093,114 - -1.3 5,093,114 - -1.4 5,093,120 - -0.0 5,093,201 - Pf6N2E2_4362 0.31 -1.3 5,093,236 - Pf6N2E2_4362 0.45 -1.2 5,093,239 - Pf6N2E2_4362 0.46 -2.2 5,093,244 - Pf6N2E2_4362 0.48 -0.4 5,093,244 - Pf6N2E2_4362 0.48 +0.9 5,093,244 - Pf6N2E2_4362 0.48 -1.6 5,093,244 - Pf6N2E2_4362 0.48 -1.9 5,093,244 - Pf6N2E2_4362 0.48 -0.4 5,093,385 - -1.8 5,093,385 - -1.6 5,093,508 + -2.1 5,093,508 + -1.0 5,093,516 + +0.2 5,093,516 + -1.1 5,093,516 + -1.4 5,093,516 + +0.3 5,093,516 + -1.9 5,093,517 - -0.1 5,093,517 - -0.5 5,093,517 - +0.8 5,093,517 - +1.1 5,093,517 - +0.3 5,093,570 + +0.1 5,093,571 - +1.6 5,093,571 - -1.1 5,093,571 - +0.5 5,093,571 - +0.7 5,094,182 - -1.7 5,094,182 - -0.5 5,094,282 - Pf6N2E2_4364 0.12 +1.1 5,094,282 - Pf6N2E2_4364 0.12 -0.3 5,094,282 - Pf6N2E2_4364 0.12 -0.1 5,094,282 - Pf6N2E2_4364 0.12 +1.9
Or see this region's nucleotide sequence