Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4278 and Pf6N2E2_4279 are separated by 13 nucleotides Pf6N2E2_4279 and Pf6N2E2_4280 are separated by 64 nucleotides
Pf6N2E2_4278 - Pyruvate carboxyl transferase subunit A (EC 6.4.1.1), at 4,978,978 to 4,980,393
_4278
Pf6N2E2_4279 - Pyruvate carboxyl transferase subunit B (EC 6.4.1.1), at 4,980,407 to 4,982,215
_4279
Pf6N2E2_4280 - serine protease, subtilase family, at 4,982,280 to 4,984,172
_4280
Position (kb)
4980
4981
4982
4983 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4979.734 kb on + strand, within Pf6N2E2_4278 at 4979.734 kb on + strand, within Pf6N2E2_4278 at 4979.735 kb on - strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.825 kb on - strand, within Pf6N2E2_4278 at 4979.825 kb on - strand, within Pf6N2E2_4278 at 4979.825 kb on - strand, within Pf6N2E2_4278 at 4979.985 kb on + strand, within Pf6N2E2_4278 at 4980.044 kb on - strand, within Pf6N2E2_4278 at 4980.046 kb on + strand, within Pf6N2E2_4278 at 4980.046 kb on + strand, within Pf6N2E2_4278 at 4980.046 kb on + strand, within Pf6N2E2_4278 at 4980.046 kb on + strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.088 kb on + strand, within Pf6N2E2_4278 at 4980.088 kb on + strand, within Pf6N2E2_4278 at 4980.088 kb on + strand, within Pf6N2E2_4278 at 4980.088 kb on + strand, within Pf6N2E2_4278 at 4980.088 kb on + strand, within Pf6N2E2_4278 at 4980.089 kb on - strand, within Pf6N2E2_4278 at 4980.089 kb on - strand, within Pf6N2E2_4278 at 4980.089 kb on - strand, within Pf6N2E2_4278 at 4980.089 kb on - strand, within Pf6N2E2_4278 at 4980.089 kb on - strand, within Pf6N2E2_4278 at 4980.232 kb on + strand, within Pf6N2E2_4278 at 4980.232 kb on + strand, within Pf6N2E2_4278 at 4980.232 kb on + strand, within Pf6N2E2_4278 at 4980.233 kb on - strand, within Pf6N2E2_4278 at 4980.235 kb on + strand, within Pf6N2E2_4278 at 4980.236 kb on - strand, within Pf6N2E2_4278 at 4980.236 kb on - strand, within Pf6N2E2_4278 at 4980.283 kb on - strand at 4980.283 kb on - strand at 4980.319 kb on + strand at 4980.319 kb on + strand at 4980.320 kb on - strand at 4980.320 kb on - strand at 4980.400 kb on + strand at 4980.400 kb on + strand at 4980.400 kb on + strand at 4980.400 kb on + strand at 4980.400 kb on + strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.574 kb on - strand at 4980.686 kb on + strand, within Pf6N2E2_4279 at 4980.686 kb on + strand, within Pf6N2E2_4279 at 4980.842 kb on + strand, within Pf6N2E2_4279 at 4980.843 kb on - strand, within Pf6N2E2_4279 at 4980.843 kb on - strand, within Pf6N2E2_4279 at 4981.157 kb on - strand, within Pf6N2E2_4279 at 4981.214 kb on + strand, within Pf6N2E2_4279 at 4981.214 kb on + strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.220 kb on + strand, within Pf6N2E2_4279 at 4981.220 kb on + strand, within Pf6N2E2_4279 at 4981.238 kb on + strand, within Pf6N2E2_4279 at 4981.238 kb on + strand, within Pf6N2E2_4279 at 4981.239 kb on - strand, within Pf6N2E2_4279 at 4981.239 kb on - strand, within Pf6N2E2_4279 at 4981.239 kb on - strand, within Pf6N2E2_4279 at 4981.296 kb on + strand, within Pf6N2E2_4279 at 4981.481 kb on + strand, within Pf6N2E2_4279 at 4981.481 kb on + strand, within Pf6N2E2_4279 at 4981.481 kb on + strand, within Pf6N2E2_4279 at 4981.481 kb on + strand, within Pf6N2E2_4279 at 4981.481 kb on + strand, within Pf6N2E2_4279 at 4981.482 kb on - strand, within Pf6N2E2_4279 at 4981.511 kb on + strand, within Pf6N2E2_4279 at 4981.512 kb on - strand, within Pf6N2E2_4279 at 4981.512 kb on - strand, within Pf6N2E2_4279 at 4981.512 kb on - strand, within Pf6N2E2_4279 at 4981.688 kb on + strand, within Pf6N2E2_4279 at 4981.850 kb on + strand, within Pf6N2E2_4279 at 4981.904 kb on + strand, within Pf6N2E2_4279 at 4981.904 kb on + strand, within Pf6N2E2_4279 at 4981.904 kb on + strand, within Pf6N2E2_4279 at 4981.905 kb on - strand, within Pf6N2E2_4279 at 4981.905 kb on - strand, within Pf6N2E2_4279 at 4981.905 kb on - strand, within Pf6N2E2_4279 at 4981.905 kb on - strand, within Pf6N2E2_4279 at 4981.905 kb on - strand, within Pf6N2E2_4279 at 4981.905 kb on - strand, within Pf6N2E2_4279 at 4982.218 kb on + strand at 4982.219 kb on - strand at 4982.219 kb on - strand at 4982.230 kb on + strand at 4982.231 kb on - strand at 4982.240 kb on + strand at 4982.347 kb on + strand at 4982.347 kb on + strand at 4982.347 kb on + strand at 4982.347 kb on + strand at 4982.347 kb on + strand at 4982.347 kb on + strand at 4982.348 kb on - strand at 4982.348 kb on - strand at 4982.348 kb on - strand at 4982.348 kb on - strand at 4982.348 kb on - strand at 4982.348 kb on - strand at 4982.348 kb on - strand at 4982.348 kb on - strand at 4982.348 kb on - strand at 4982.348 kb on - strand at 4982.442 kb on - strand at 4982.443 kb on + strand at 4982.443 kb on + strand at 4982.443 kb on + strand at 4982.443 kb on + strand at 4982.443 kb on + strand at 4982.443 kb on + strand at 4982.443 kb on + strand at 4982.444 kb on - strand at 4982.444 kb on - strand at 4982.444 kb on - strand at 4982.444 kb on - strand at 4982.444 kb on - strand at 4982.444 kb on - strand at 4982.444 kb on - strand at 4982.444 kb on - strand at 4982.444 kb on - strand at 4982.497 kb on + strand, within Pf6N2E2_4280 at 4982.497 kb on + strand, within Pf6N2E2_4280 at 4982.498 kb on - strand, within Pf6N2E2_4280 at 4982.593 kb on + strand, within Pf6N2E2_4280 at 4982.593 kb on + strand, within Pf6N2E2_4280 at 4982.594 kb on - strand, within Pf6N2E2_4280 at 4982.665 kb on + strand, within Pf6N2E2_4280 at 4982.665 kb on + strand, within Pf6N2E2_4280 at 4982.836 kb on + strand, within Pf6N2E2_4280 at 4982.853 kb on + strand, within Pf6N2E2_4280 at 4982.884 kb on + strand, within Pf6N2E2_4280 at 4982.884 kb on + strand, within Pf6N2E2_4280 at 4982.968 kb on - strand, within Pf6N2E2_4280
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,979,734 + Pf6N2E2_4278 0.53 +0.2 4,979,734 + Pf6N2E2_4278 0.53 +0.2 4,979,735 - Pf6N2E2_4278 0.53 +0.7 4,979,824 + Pf6N2E2_4278 0.60 +2.4 4,979,824 + Pf6N2E2_4278 0.60 -1.8 4,979,824 + Pf6N2E2_4278 0.60 -1.1 4,979,824 + Pf6N2E2_4278 0.60 -1.0 4,979,824 + Pf6N2E2_4278 0.60 -1.3 4,979,824 + Pf6N2E2_4278 0.60 -1.1 4,979,824 + Pf6N2E2_4278 0.60 -0.7 4,979,824 + Pf6N2E2_4278 0.60 -1.9 4,979,825 - Pf6N2E2_4278 0.60 +0.9 4,979,825 - Pf6N2E2_4278 0.60 -1.6 4,979,825 - Pf6N2E2_4278 0.60 -2.2 4,979,985 + Pf6N2E2_4278 0.71 -0.3 4,980,044 - Pf6N2E2_4278 0.75 +0.1 4,980,046 + Pf6N2E2_4278 0.75 -0.6 4,980,046 + Pf6N2E2_4278 0.75 -1.5 4,980,046 + Pf6N2E2_4278 0.75 -1.0 4,980,046 + Pf6N2E2_4278 0.75 -1.5 4,980,047 - Pf6N2E2_4278 0.75 -0.2 4,980,047 - Pf6N2E2_4278 0.75 -0.4 4,980,047 - Pf6N2E2_4278 0.75 -0.7 4,980,047 - Pf6N2E2_4278 0.75 -2.8 4,980,047 - Pf6N2E2_4278 0.75 -1.2 4,980,047 - Pf6N2E2_4278 0.75 -1.1 4,980,088 + Pf6N2E2_4278 0.78 -1.6 4,980,088 + Pf6N2E2_4278 0.78 -0.4 4,980,088 + Pf6N2E2_4278 0.78 +0.2 4,980,088 + Pf6N2E2_4278 0.78 -0.9 4,980,088 + Pf6N2E2_4278 0.78 -0.9 4,980,089 - Pf6N2E2_4278 0.78 +0.0 4,980,089 - Pf6N2E2_4278 0.78 -0.8 4,980,089 - Pf6N2E2_4278 0.78 -0.0 4,980,089 - Pf6N2E2_4278 0.78 -0.2 4,980,089 - Pf6N2E2_4278 0.78 -2.2 4,980,232 + Pf6N2E2_4278 0.89 +0.3 4,980,232 + Pf6N2E2_4278 0.89 -1.6 4,980,232 + Pf6N2E2_4278 0.89 -1.0 4,980,233 - Pf6N2E2_4278 0.89 +1.1 4,980,235 + Pf6N2E2_4278 0.89 -0.0 4,980,236 - Pf6N2E2_4278 0.89 -0.6 4,980,236 - Pf6N2E2_4278 0.89 -2.3 4,980,283 - -0.6 4,980,283 - +0.6 4,980,319 + -0.7 4,980,319 + -2.6 4,980,320 - +0.3 4,980,320 - -0.4 4,980,400 + +0.1 4,980,400 + +0.2 4,980,400 + +0.2 4,980,400 + +0.4 4,980,400 + +0.6 4,980,401 - -0.7 4,980,401 - +0.4 4,980,401 - -0.1 4,980,401 - -0.5 4,980,401 - -0.6 4,980,401 - -0.2 4,980,401 - -0.5 4,980,401 - -0.0 4,980,574 - -1.9 4,980,686 + Pf6N2E2_4279 0.15 -0.2 4,980,686 + Pf6N2E2_4279 0.15 -0.9 4,980,842 + Pf6N2E2_4279 0.24 +0.1 4,980,843 - Pf6N2E2_4279 0.24 -2.1 4,980,843 - Pf6N2E2_4279 0.24 -0.7 4,981,157 - Pf6N2E2_4279 0.41 -2.0 4,981,214 + Pf6N2E2_4279 0.45 -0.8 4,981,214 + Pf6N2E2_4279 0.45 -1.1 4,981,215 - Pf6N2E2_4279 0.45 -0.0 4,981,215 - Pf6N2E2_4279 0.45 +0.7 4,981,215 - Pf6N2E2_4279 0.45 -3.0 4,981,215 - Pf6N2E2_4279 0.45 +0.3 4,981,215 - Pf6N2E2_4279 0.45 -2.1 4,981,215 - Pf6N2E2_4279 0.45 -0.8 4,981,215 - Pf6N2E2_4279 0.45 -1.5 4,981,215 - Pf6N2E2_4279 0.45 -1.0 4,981,215 - Pf6N2E2_4279 0.45 -0.5 4,981,215 - Pf6N2E2_4279 0.45 -0.8 4,981,220 + Pf6N2E2_4279 0.45 -0.5 4,981,220 + Pf6N2E2_4279 0.45 +0.1 4,981,238 + Pf6N2E2_4279 0.46 -2.0 4,981,238 + Pf6N2E2_4279 0.46 -0.1 4,981,239 - Pf6N2E2_4279 0.46 -1.5 4,981,239 - Pf6N2E2_4279 0.46 +0.6 4,981,239 - Pf6N2E2_4279 0.46 -1.0 4,981,296 + Pf6N2E2_4279 0.49 +0.1 4,981,481 + Pf6N2E2_4279 0.59 -0.5 4,981,481 + Pf6N2E2_4279 0.59 -0.2 4,981,481 + Pf6N2E2_4279 0.59 +0.1 4,981,481 + Pf6N2E2_4279 0.59 -1.3 4,981,481 + Pf6N2E2_4279 0.59 -1.0 4,981,482 - Pf6N2E2_4279 0.59 +0.4 4,981,511 + Pf6N2E2_4279 0.61 -1.2 4,981,512 - Pf6N2E2_4279 0.61 -0.8 4,981,512 - Pf6N2E2_4279 0.61 -1.1 4,981,512 - Pf6N2E2_4279 0.61 -0.8 4,981,688 + Pf6N2E2_4279 0.71 -2.5 4,981,850 + Pf6N2E2_4279 0.80 -0.1 4,981,904 + Pf6N2E2_4279 0.83 -0.7 4,981,904 + Pf6N2E2_4279 0.83 -1.0 4,981,904 + Pf6N2E2_4279 0.83 -0.4 4,981,905 - Pf6N2E2_4279 0.83 -1.6 4,981,905 - Pf6N2E2_4279 0.83 -0.2 4,981,905 - Pf6N2E2_4279 0.83 -1.4 4,981,905 - Pf6N2E2_4279 0.83 -0.6 4,981,905 - Pf6N2E2_4279 0.83 -0.3 4,981,905 - Pf6N2E2_4279 0.83 -0.6 4,982,218 + -0.6 4,982,219 - -0.3 4,982,219 - +0.6 4,982,230 + -0.7 4,982,231 - -1.0 4,982,240 + -0.3 4,982,347 + -0.3 4,982,347 + -0.3 4,982,347 + +0.9 4,982,347 + +0.5 4,982,347 + +0.6 4,982,347 + +1.2 4,982,348 - +1.1 4,982,348 - -1.3 4,982,348 - +0.0 4,982,348 - +0.5 4,982,348 - +0.3 4,982,348 - +0.5 4,982,348 - +0.6 4,982,348 - -1.4 4,982,348 - +0.0 4,982,348 - -0.1 4,982,442 - +0.5 4,982,443 + -0.3 4,982,443 + +1.8 4,982,443 + +0.7 4,982,443 + -2.1 4,982,443 + +0.6 4,982,443 + +0.0 4,982,443 + -0.6 4,982,444 - -0.7 4,982,444 - -0.8 4,982,444 - -0.2 4,982,444 - -2.0 4,982,444 - +0.2 4,982,444 - +0.9 4,982,444 - -1.3 4,982,444 - +0.7 4,982,444 - -0.0 4,982,497 + Pf6N2E2_4280 0.11 +0.2 4,982,497 + Pf6N2E2_4280 0.11 -0.1 4,982,498 - Pf6N2E2_4280 0.12 -0.9 4,982,593 + Pf6N2E2_4280 0.17 -1.9 4,982,593 + Pf6N2E2_4280 0.17 +1.8 4,982,594 - Pf6N2E2_4280 0.17 -0.4 4,982,665 + Pf6N2E2_4280 0.20 -0.2 4,982,665 + Pf6N2E2_4280 0.20 -0.1 4,982,836 + Pf6N2E2_4280 0.29 -0.0 4,982,853 + Pf6N2E2_4280 0.30 -0.5 4,982,884 + Pf6N2E2_4280 0.32 +1.5 4,982,884 + Pf6N2E2_4280 0.32 +0.3 4,982,968 - Pf6N2E2_4280 0.36 -0.3
Or see this region's nucleotide sequence