Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4279

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4278 and Pf6N2E2_4279 are separated by 13 nucleotidesPf6N2E2_4279 and Pf6N2E2_4280 are separated by 64 nucleotides Pf6N2E2_4278 - Pyruvate carboxyl transferase subunit A (EC 6.4.1.1), at 4,978,978 to 4,980,393 _4278 Pf6N2E2_4279 - Pyruvate carboxyl transferase subunit B (EC 6.4.1.1), at 4,980,407 to 4,982,215 _4279 Pf6N2E2_4280 - serine protease, subtilase family, at 4,982,280 to 4,984,172 _4280 Position (kb) 4980 4981 4982 4983Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4979.734 kb on + strand, within Pf6N2E2_4278at 4979.734 kb on + strand, within Pf6N2E2_4278at 4979.735 kb on - strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.825 kb on - strand, within Pf6N2E2_4278at 4979.825 kb on - strand, within Pf6N2E2_4278at 4979.825 kb on - strand, within Pf6N2E2_4278at 4979.985 kb on + strand, within Pf6N2E2_4278at 4980.044 kb on - strand, within Pf6N2E2_4278at 4980.046 kb on + strand, within Pf6N2E2_4278at 4980.046 kb on + strand, within Pf6N2E2_4278at 4980.046 kb on + strand, within Pf6N2E2_4278at 4980.046 kb on + strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.088 kb on + strand, within Pf6N2E2_4278at 4980.088 kb on + strand, within Pf6N2E2_4278at 4980.088 kb on + strand, within Pf6N2E2_4278at 4980.088 kb on + strand, within Pf6N2E2_4278at 4980.088 kb on + strand, within Pf6N2E2_4278at 4980.089 kb on - strand, within Pf6N2E2_4278at 4980.089 kb on - strand, within Pf6N2E2_4278at 4980.089 kb on - strand, within Pf6N2E2_4278at 4980.089 kb on - strand, within Pf6N2E2_4278at 4980.089 kb on - strand, within Pf6N2E2_4278at 4980.232 kb on + strand, within Pf6N2E2_4278at 4980.232 kb on + strand, within Pf6N2E2_4278at 4980.232 kb on + strand, within Pf6N2E2_4278at 4980.233 kb on - strand, within Pf6N2E2_4278at 4980.235 kb on + strand, within Pf6N2E2_4278at 4980.236 kb on - strand, within Pf6N2E2_4278at 4980.236 kb on - strand, within Pf6N2E2_4278at 4980.283 kb on - strandat 4980.283 kb on - strandat 4980.319 kb on + strandat 4980.319 kb on + strandat 4980.320 kb on - strandat 4980.320 kb on - strandat 4980.400 kb on + strandat 4980.400 kb on + strandat 4980.400 kb on + strandat 4980.400 kb on + strandat 4980.400 kb on + strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.574 kb on - strandat 4980.686 kb on + strand, within Pf6N2E2_4279at 4980.686 kb on + strand, within Pf6N2E2_4279at 4980.842 kb on + strand, within Pf6N2E2_4279at 4980.843 kb on - strand, within Pf6N2E2_4279at 4980.843 kb on - strand, within Pf6N2E2_4279at 4981.157 kb on - strand, within Pf6N2E2_4279at 4981.214 kb on + strand, within Pf6N2E2_4279at 4981.214 kb on + strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.220 kb on + strand, within Pf6N2E2_4279at 4981.220 kb on + strand, within Pf6N2E2_4279at 4981.238 kb on + strand, within Pf6N2E2_4279at 4981.238 kb on + strand, within Pf6N2E2_4279at 4981.239 kb on - strand, within Pf6N2E2_4279at 4981.239 kb on - strand, within Pf6N2E2_4279at 4981.239 kb on - strand, within Pf6N2E2_4279at 4981.296 kb on + strand, within Pf6N2E2_4279at 4981.481 kb on + strand, within Pf6N2E2_4279at 4981.481 kb on + strand, within Pf6N2E2_4279at 4981.481 kb on + strand, within Pf6N2E2_4279at 4981.481 kb on + strand, within Pf6N2E2_4279at 4981.481 kb on + strand, within Pf6N2E2_4279at 4981.482 kb on - strand, within Pf6N2E2_4279at 4981.511 kb on + strand, within Pf6N2E2_4279at 4981.512 kb on - strand, within Pf6N2E2_4279at 4981.512 kb on - strand, within Pf6N2E2_4279at 4981.512 kb on - strand, within Pf6N2E2_4279at 4981.688 kb on + strand, within Pf6N2E2_4279at 4981.850 kb on + strand, within Pf6N2E2_4279at 4981.904 kb on + strand, within Pf6N2E2_4279at 4981.904 kb on + strand, within Pf6N2E2_4279at 4981.904 kb on + strand, within Pf6N2E2_4279at 4981.905 kb on - strand, within Pf6N2E2_4279at 4981.905 kb on - strand, within Pf6N2E2_4279at 4981.905 kb on - strand, within Pf6N2E2_4279at 4981.905 kb on - strand, within Pf6N2E2_4279at 4981.905 kb on - strand, within Pf6N2E2_4279at 4981.905 kb on - strand, within Pf6N2E2_4279at 4982.218 kb on + strandat 4982.219 kb on - strandat 4982.219 kb on - strandat 4982.230 kb on + strandat 4982.231 kb on - strandat 4982.240 kb on + strandat 4982.347 kb on + strandat 4982.347 kb on + strandat 4982.347 kb on + strandat 4982.347 kb on + strandat 4982.347 kb on + strandat 4982.347 kb on + strandat 4982.348 kb on - strandat 4982.348 kb on - strandat 4982.348 kb on - strandat 4982.348 kb on - strandat 4982.348 kb on - strandat 4982.348 kb on - strandat 4982.348 kb on - strandat 4982.348 kb on - strandat 4982.348 kb on - strandat 4982.348 kb on - strandat 4982.442 kb on - strandat 4982.443 kb on + strandat 4982.443 kb on + strandat 4982.443 kb on + strandat 4982.443 kb on + strandat 4982.443 kb on + strandat 4982.443 kb on + strandat 4982.443 kb on + strandat 4982.444 kb on - strandat 4982.444 kb on - strandat 4982.444 kb on - strandat 4982.444 kb on - strandat 4982.444 kb on - strandat 4982.444 kb on - strandat 4982.444 kb on - strandat 4982.444 kb on - strandat 4982.444 kb on - strandat 4982.497 kb on + strand, within Pf6N2E2_4280at 4982.497 kb on + strand, within Pf6N2E2_4280at 4982.498 kb on - strand, within Pf6N2E2_4280at 4982.593 kb on + strand, within Pf6N2E2_4280at 4982.593 kb on + strand, within Pf6N2E2_4280at 4982.594 kb on - strand, within Pf6N2E2_4280at 4982.665 kb on + strand, within Pf6N2E2_4280at 4982.665 kb on + strand, within Pf6N2E2_4280at 4982.836 kb on + strand, within Pf6N2E2_4280at 4982.853 kb on + strand, within Pf6N2E2_4280at 4982.884 kb on + strand, within Pf6N2E2_4280at 4982.884 kb on + strand, within Pf6N2E2_4280at 4982.968 kb on - strand, within Pf6N2E2_4280

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,979,734 + Pf6N2E2_4278 0.53 +0.2
4,979,734 + Pf6N2E2_4278 0.53 +0.2
4,979,735 - Pf6N2E2_4278 0.53 +0.7
4,979,824 + Pf6N2E2_4278 0.60 +2.4
4,979,824 + Pf6N2E2_4278 0.60 -1.8
4,979,824 + Pf6N2E2_4278 0.60 -1.1
4,979,824 + Pf6N2E2_4278 0.60 -1.0
4,979,824 + Pf6N2E2_4278 0.60 -1.3
4,979,824 + Pf6N2E2_4278 0.60 -1.1
4,979,824 + Pf6N2E2_4278 0.60 -0.7
4,979,824 + Pf6N2E2_4278 0.60 -1.9
4,979,825 - Pf6N2E2_4278 0.60 +0.9
4,979,825 - Pf6N2E2_4278 0.60 -1.6
4,979,825 - Pf6N2E2_4278 0.60 -2.2
4,979,985 + Pf6N2E2_4278 0.71 -0.3
4,980,044 - Pf6N2E2_4278 0.75 +0.1
4,980,046 + Pf6N2E2_4278 0.75 -0.6
4,980,046 + Pf6N2E2_4278 0.75 -1.5
4,980,046 + Pf6N2E2_4278 0.75 -1.0
4,980,046 + Pf6N2E2_4278 0.75 -1.5
4,980,047 - Pf6N2E2_4278 0.75 -0.2
4,980,047 - Pf6N2E2_4278 0.75 -0.4
4,980,047 - Pf6N2E2_4278 0.75 -0.7
4,980,047 - Pf6N2E2_4278 0.75 -2.8
4,980,047 - Pf6N2E2_4278 0.75 -1.2
4,980,047 - Pf6N2E2_4278 0.75 -1.1
4,980,088 + Pf6N2E2_4278 0.78 -1.6
4,980,088 + Pf6N2E2_4278 0.78 -0.4
4,980,088 + Pf6N2E2_4278 0.78 +0.2
4,980,088 + Pf6N2E2_4278 0.78 -0.9
4,980,088 + Pf6N2E2_4278 0.78 -0.9
4,980,089 - Pf6N2E2_4278 0.78 +0.0
4,980,089 - Pf6N2E2_4278 0.78 -0.8
4,980,089 - Pf6N2E2_4278 0.78 -0.0
4,980,089 - Pf6N2E2_4278 0.78 -0.2
4,980,089 - Pf6N2E2_4278 0.78 -2.2
4,980,232 + Pf6N2E2_4278 0.89 +0.3
4,980,232 + Pf6N2E2_4278 0.89 -1.6
4,980,232 + Pf6N2E2_4278 0.89 -1.0
4,980,233 - Pf6N2E2_4278 0.89 +1.1
4,980,235 + Pf6N2E2_4278 0.89 -0.0
4,980,236 - Pf6N2E2_4278 0.89 -0.6
4,980,236 - Pf6N2E2_4278 0.89 -2.3
4,980,283 - -0.6
4,980,283 - +0.6
4,980,319 + -0.7
4,980,319 + -2.6
4,980,320 - +0.3
4,980,320 - -0.4
4,980,400 + +0.1
4,980,400 + +0.2
4,980,400 + +0.2
4,980,400 + +0.4
4,980,400 + +0.6
4,980,401 - -0.7
4,980,401 - +0.4
4,980,401 - -0.1
4,980,401 - -0.5
4,980,401 - -0.6
4,980,401 - -0.2
4,980,401 - -0.5
4,980,401 - -0.0
4,980,574 - -1.9
4,980,686 + Pf6N2E2_4279 0.15 -0.2
4,980,686 + Pf6N2E2_4279 0.15 -0.9
4,980,842 + Pf6N2E2_4279 0.24 +0.1
4,980,843 - Pf6N2E2_4279 0.24 -2.1
4,980,843 - Pf6N2E2_4279 0.24 -0.7
4,981,157 - Pf6N2E2_4279 0.41 -2.0
4,981,214 + Pf6N2E2_4279 0.45 -0.8
4,981,214 + Pf6N2E2_4279 0.45 -1.1
4,981,215 - Pf6N2E2_4279 0.45 -0.0
4,981,215 - Pf6N2E2_4279 0.45 +0.7
4,981,215 - Pf6N2E2_4279 0.45 -3.0
4,981,215 - Pf6N2E2_4279 0.45 +0.3
4,981,215 - Pf6N2E2_4279 0.45 -2.1
4,981,215 - Pf6N2E2_4279 0.45 -0.8
4,981,215 - Pf6N2E2_4279 0.45 -1.5
4,981,215 - Pf6N2E2_4279 0.45 -1.0
4,981,215 - Pf6N2E2_4279 0.45 -0.5
4,981,215 - Pf6N2E2_4279 0.45 -0.8
4,981,220 + Pf6N2E2_4279 0.45 -0.5
4,981,220 + Pf6N2E2_4279 0.45 +0.1
4,981,238 + Pf6N2E2_4279 0.46 -2.0
4,981,238 + Pf6N2E2_4279 0.46 -0.1
4,981,239 - Pf6N2E2_4279 0.46 -1.5
4,981,239 - Pf6N2E2_4279 0.46 +0.6
4,981,239 - Pf6N2E2_4279 0.46 -1.0
4,981,296 + Pf6N2E2_4279 0.49 +0.1
4,981,481 + Pf6N2E2_4279 0.59 -0.5
4,981,481 + Pf6N2E2_4279 0.59 -0.2
4,981,481 + Pf6N2E2_4279 0.59 +0.1
4,981,481 + Pf6N2E2_4279 0.59 -1.3
4,981,481 + Pf6N2E2_4279 0.59 -1.0
4,981,482 - Pf6N2E2_4279 0.59 +0.4
4,981,511 + Pf6N2E2_4279 0.61 -1.2
4,981,512 - Pf6N2E2_4279 0.61 -0.8
4,981,512 - Pf6N2E2_4279 0.61 -1.1
4,981,512 - Pf6N2E2_4279 0.61 -0.8
4,981,688 + Pf6N2E2_4279 0.71 -2.5
4,981,850 + Pf6N2E2_4279 0.80 -0.1
4,981,904 + Pf6N2E2_4279 0.83 -0.7
4,981,904 + Pf6N2E2_4279 0.83 -1.0
4,981,904 + Pf6N2E2_4279 0.83 -0.4
4,981,905 - Pf6N2E2_4279 0.83 -1.6
4,981,905 - Pf6N2E2_4279 0.83 -0.2
4,981,905 - Pf6N2E2_4279 0.83 -1.4
4,981,905 - Pf6N2E2_4279 0.83 -0.6
4,981,905 - Pf6N2E2_4279 0.83 -0.3
4,981,905 - Pf6N2E2_4279 0.83 -0.6
4,982,218 + -0.6
4,982,219 - -0.3
4,982,219 - +0.6
4,982,230 + -0.7
4,982,231 - -1.0
4,982,240 + -0.3
4,982,347 + -0.3
4,982,347 + -0.3
4,982,347 + +0.9
4,982,347 + +0.5
4,982,347 + +0.6
4,982,347 + +1.2
4,982,348 - +1.1
4,982,348 - -1.3
4,982,348 - +0.0
4,982,348 - +0.5
4,982,348 - +0.3
4,982,348 - +0.5
4,982,348 - +0.6
4,982,348 - -1.4
4,982,348 - +0.0
4,982,348 - -0.1
4,982,442 - +0.5
4,982,443 + -0.3
4,982,443 + +1.8
4,982,443 + +0.7
4,982,443 + -2.1
4,982,443 + +0.6
4,982,443 + +0.0
4,982,443 + -0.6
4,982,444 - -0.7
4,982,444 - -0.8
4,982,444 - -0.2
4,982,444 - -2.0
4,982,444 - +0.2
4,982,444 - +0.9
4,982,444 - -1.3
4,982,444 - +0.7
4,982,444 - -0.0
4,982,497 + Pf6N2E2_4280 0.11 +0.2
4,982,497 + Pf6N2E2_4280 0.11 -0.1
4,982,498 - Pf6N2E2_4280 0.12 -0.9
4,982,593 + Pf6N2E2_4280 0.17 -1.9
4,982,593 + Pf6N2E2_4280 0.17 +1.8
4,982,594 - Pf6N2E2_4280 0.17 -0.4
4,982,665 + Pf6N2E2_4280 0.20 -0.2
4,982,665 + Pf6N2E2_4280 0.20 -0.1
4,982,836 + Pf6N2E2_4280 0.29 -0.0
4,982,853 + Pf6N2E2_4280 0.30 -0.5
4,982,884 + Pf6N2E2_4280 0.32 +1.5
4,982,884 + Pf6N2E2_4280 0.32 +0.3
4,982,968 - Pf6N2E2_4280 0.36 -0.3

Or see this region's nucleotide sequence