Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4277 and Pf6N2E2_4278 are separated by 208 nucleotides Pf6N2E2_4278 and Pf6N2E2_4279 are separated by 13 nucleotides
Pf6N2E2_4277 - LysR family transcriptional regulator PA5437, at 4,977,828 to 4,978,769
_4277
Pf6N2E2_4278 - Pyruvate carboxyl transferase subunit A (EC 6.4.1.1), at 4,978,978 to 4,980,393
_4278
Pf6N2E2_4279 - Pyruvate carboxyl transferase subunit B (EC 6.4.1.1), at 4,980,407 to 4,982,215
_4279
Position (kb)
4978
4979
4980
4981 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4978.200 kb on + strand, within Pf6N2E2_4277 at 4978.205 kb on + strand, within Pf6N2E2_4277 at 4978.205 kb on + strand, within Pf6N2E2_4277 at 4978.205 kb on + strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.207 kb on + strand, within Pf6N2E2_4277 at 4978.207 kb on + strand, within Pf6N2E2_4277 at 4978.208 kb on - strand, within Pf6N2E2_4277 at 4978.208 kb on - strand, within Pf6N2E2_4277 at 4978.208 kb on - strand, within Pf6N2E2_4277 at 4978.208 kb on - strand, within Pf6N2E2_4277 at 4978.462 kb on + strand, within Pf6N2E2_4277 at 4978.462 kb on + strand, within Pf6N2E2_4277 at 4978.462 kb on + strand, within Pf6N2E2_4277 at 4978.463 kb on - strand, within Pf6N2E2_4277 at 4978.463 kb on - strand, within Pf6N2E2_4277 at 4978.463 kb on - strand, within Pf6N2E2_4277 at 4978.604 kb on - strand, within Pf6N2E2_4277 at 4978.604 kb on - strand, within Pf6N2E2_4277 at 4978.617 kb on + strand, within Pf6N2E2_4277 at 4978.617 kb on + strand, within Pf6N2E2_4277 at 4978.617 kb on + strand, within Pf6N2E2_4277 at 4978.617 kb on + strand, within Pf6N2E2_4277 at 4978.617 kb on + strand, within Pf6N2E2_4277 at 4978.618 kb on - strand, within Pf6N2E2_4277 at 4978.618 kb on - strand, within Pf6N2E2_4277 at 4978.618 kb on - strand, within Pf6N2E2_4277 at 4978.618 kb on - strand, within Pf6N2E2_4277 at 4978.618 kb on - strand, within Pf6N2E2_4277 at 4978.621 kb on + strand, within Pf6N2E2_4277 at 4978.621 kb on + strand, within Pf6N2E2_4277 at 4978.621 kb on + strand, within Pf6N2E2_4277 at 4978.621 kb on + strand, within Pf6N2E2_4277 at 4978.621 kb on + strand, within Pf6N2E2_4277 at 4978.621 kb on + strand, within Pf6N2E2_4277 at 4978.621 kb on + strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.622 kb on - strand, within Pf6N2E2_4277 at 4978.668 kb on + strand, within Pf6N2E2_4277 at 4978.718 kb on - strand at 4978.718 kb on - strand at 4978.718 kb on - strand at 4978.818 kb on + strand at 4978.819 kb on - strand at 4978.890 kb on - strand at 4978.913 kb on + strand at 4978.914 kb on - strand at 4978.953 kb on - strand at 4978.953 kb on - strand at 4978.982 kb on + strand at 4978.982 kb on + strand at 4979.387 kb on + strand, within Pf6N2E2_4278 at 4979.734 kb on + strand, within Pf6N2E2_4278 at 4979.734 kb on + strand, within Pf6N2E2_4278 at 4979.735 kb on - strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.824 kb on + strand, within Pf6N2E2_4278 at 4979.825 kb on - strand, within Pf6N2E2_4278 at 4979.825 kb on - strand, within Pf6N2E2_4278 at 4979.825 kb on - strand, within Pf6N2E2_4278 at 4979.985 kb on + strand, within Pf6N2E2_4278 at 4980.044 kb on - strand, within Pf6N2E2_4278 at 4980.046 kb on + strand, within Pf6N2E2_4278 at 4980.046 kb on + strand, within Pf6N2E2_4278 at 4980.046 kb on + strand, within Pf6N2E2_4278 at 4980.046 kb on + strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.047 kb on - strand, within Pf6N2E2_4278 at 4980.088 kb on + strand, within Pf6N2E2_4278 at 4980.088 kb on + strand, within Pf6N2E2_4278 at 4980.088 kb on + strand, within Pf6N2E2_4278 at 4980.088 kb on + strand, within Pf6N2E2_4278 at 4980.088 kb on + strand, within Pf6N2E2_4278 at 4980.089 kb on - strand, within Pf6N2E2_4278 at 4980.089 kb on - strand, within Pf6N2E2_4278 at 4980.089 kb on - strand, within Pf6N2E2_4278 at 4980.089 kb on - strand, within Pf6N2E2_4278 at 4980.089 kb on - strand, within Pf6N2E2_4278 at 4980.232 kb on + strand, within Pf6N2E2_4278 at 4980.232 kb on + strand, within Pf6N2E2_4278 at 4980.232 kb on + strand, within Pf6N2E2_4278 at 4980.233 kb on - strand, within Pf6N2E2_4278 at 4980.235 kb on + strand, within Pf6N2E2_4278 at 4980.236 kb on - strand, within Pf6N2E2_4278 at 4980.236 kb on - strand, within Pf6N2E2_4278 at 4980.283 kb on - strand at 4980.283 kb on - strand at 4980.319 kb on + strand at 4980.319 kb on + strand at 4980.320 kb on - strand at 4980.320 kb on - strand at 4980.400 kb on + strand at 4980.400 kb on + strand at 4980.400 kb on + strand at 4980.400 kb on + strand at 4980.400 kb on + strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.401 kb on - strand at 4980.574 kb on - strand at 4980.686 kb on + strand, within Pf6N2E2_4279 at 4980.686 kb on + strand, within Pf6N2E2_4279 at 4980.842 kb on + strand, within Pf6N2E2_4279 at 4980.843 kb on - strand, within Pf6N2E2_4279 at 4980.843 kb on - strand, within Pf6N2E2_4279 at 4981.157 kb on - strand, within Pf6N2E2_4279 at 4981.214 kb on + strand, within Pf6N2E2_4279 at 4981.214 kb on + strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.215 kb on - strand, within Pf6N2E2_4279 at 4981.220 kb on + strand, within Pf6N2E2_4279 at 4981.220 kb on + strand, within Pf6N2E2_4279 at 4981.238 kb on + strand, within Pf6N2E2_4279 at 4981.238 kb on + strand, within Pf6N2E2_4279 at 4981.239 kb on - strand, within Pf6N2E2_4279 at 4981.239 kb on - strand, within Pf6N2E2_4279 at 4981.239 kb on - strand, within Pf6N2E2_4279 at 4981.296 kb on + strand, within Pf6N2E2_4279
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,978,200 + Pf6N2E2_4277 0.39 +0.8 4,978,205 + Pf6N2E2_4277 0.40 -0.4 4,978,205 + Pf6N2E2_4277 0.40 +0.2 4,978,205 + Pf6N2E2_4277 0.40 +0.3 4,978,206 - Pf6N2E2_4277 0.40 +0.7 4,978,206 - Pf6N2E2_4277 0.40 +0.2 4,978,206 - Pf6N2E2_4277 0.40 -0.8 4,978,206 - Pf6N2E2_4277 0.40 +0.6 4,978,206 - Pf6N2E2_4277 0.40 +4.3 4,978,206 - Pf6N2E2_4277 0.40 -0.2 4,978,206 - Pf6N2E2_4277 0.40 +0.5 4,978,207 + Pf6N2E2_4277 0.40 -1.9 4,978,207 + Pf6N2E2_4277 0.40 +0.2 4,978,208 - Pf6N2E2_4277 0.40 +0.5 4,978,208 - Pf6N2E2_4277 0.40 +0.2 4,978,208 - Pf6N2E2_4277 0.40 -1.2 4,978,208 - Pf6N2E2_4277 0.40 +0.1 4,978,462 + Pf6N2E2_4277 0.67 +0.2 4,978,462 + Pf6N2E2_4277 0.67 +1.0 4,978,462 + Pf6N2E2_4277 0.67 -0.3 4,978,463 - Pf6N2E2_4277 0.67 +0.9 4,978,463 - Pf6N2E2_4277 0.67 -0.4 4,978,463 - Pf6N2E2_4277 0.67 +0.1 4,978,604 - Pf6N2E2_4277 0.82 +0.1 4,978,604 - Pf6N2E2_4277 0.82 +0.9 4,978,617 + Pf6N2E2_4277 0.84 +0.8 4,978,617 + Pf6N2E2_4277 0.84 +0.7 4,978,617 + Pf6N2E2_4277 0.84 +0.7 4,978,617 + Pf6N2E2_4277 0.84 -0.2 4,978,617 + Pf6N2E2_4277 0.84 +0.8 4,978,618 - Pf6N2E2_4277 0.84 -0.3 4,978,618 - Pf6N2E2_4277 0.84 +0.4 4,978,618 - Pf6N2E2_4277 0.84 -1.8 4,978,618 - Pf6N2E2_4277 0.84 +1.4 4,978,618 - Pf6N2E2_4277 0.84 +0.8 4,978,621 + Pf6N2E2_4277 0.84 +1.1 4,978,621 + Pf6N2E2_4277 0.84 +1.6 4,978,621 + Pf6N2E2_4277 0.84 +0.3 4,978,621 + Pf6N2E2_4277 0.84 +1.1 4,978,621 + Pf6N2E2_4277 0.84 +0.3 4,978,621 + Pf6N2E2_4277 0.84 +1.4 4,978,621 + Pf6N2E2_4277 0.84 +0.8 4,978,622 - Pf6N2E2_4277 0.84 -0.6 4,978,622 - Pf6N2E2_4277 0.84 +0.7 4,978,622 - Pf6N2E2_4277 0.84 +1.0 4,978,622 - Pf6N2E2_4277 0.84 +0.9 4,978,622 - Pf6N2E2_4277 0.84 -0.5 4,978,622 - Pf6N2E2_4277 0.84 -0.0 4,978,622 - Pf6N2E2_4277 0.84 +0.3 4,978,622 - Pf6N2E2_4277 0.84 +0.3 4,978,622 - Pf6N2E2_4277 0.84 +1.5 4,978,622 - Pf6N2E2_4277 0.84 +0.8 4,978,622 - Pf6N2E2_4277 0.84 -0.2 4,978,622 - Pf6N2E2_4277 0.84 +0.7 4,978,668 + Pf6N2E2_4277 0.89 +0.7 4,978,718 - -0.0 4,978,718 - +0.6 4,978,718 - -1.1 4,978,818 + +1.4 4,978,819 - +0.2 4,978,890 - +0.9 4,978,913 + +0.2 4,978,914 - +0.8 4,978,953 - -1.1 4,978,953 - +0.6 4,978,982 + +0.8 4,978,982 + +0.4 4,979,387 + Pf6N2E2_4278 0.29 -1.0 4,979,734 + Pf6N2E2_4278 0.53 +0.2 4,979,734 + Pf6N2E2_4278 0.53 +0.2 4,979,735 - Pf6N2E2_4278 0.53 +0.7 4,979,824 + Pf6N2E2_4278 0.60 +2.4 4,979,824 + Pf6N2E2_4278 0.60 -1.8 4,979,824 + Pf6N2E2_4278 0.60 -1.1 4,979,824 + Pf6N2E2_4278 0.60 -1.0 4,979,824 + Pf6N2E2_4278 0.60 -1.3 4,979,824 + Pf6N2E2_4278 0.60 -1.1 4,979,824 + Pf6N2E2_4278 0.60 -0.7 4,979,824 + Pf6N2E2_4278 0.60 -1.9 4,979,825 - Pf6N2E2_4278 0.60 +0.9 4,979,825 - Pf6N2E2_4278 0.60 -1.6 4,979,825 - Pf6N2E2_4278 0.60 -2.2 4,979,985 + Pf6N2E2_4278 0.71 -0.3 4,980,044 - Pf6N2E2_4278 0.75 +0.1 4,980,046 + Pf6N2E2_4278 0.75 -0.6 4,980,046 + Pf6N2E2_4278 0.75 -1.5 4,980,046 + Pf6N2E2_4278 0.75 -1.0 4,980,046 + Pf6N2E2_4278 0.75 -1.5 4,980,047 - Pf6N2E2_4278 0.75 -0.2 4,980,047 - Pf6N2E2_4278 0.75 -0.4 4,980,047 - Pf6N2E2_4278 0.75 -0.7 4,980,047 - Pf6N2E2_4278 0.75 -2.8 4,980,047 - Pf6N2E2_4278 0.75 -1.2 4,980,047 - Pf6N2E2_4278 0.75 -1.1 4,980,088 + Pf6N2E2_4278 0.78 -1.6 4,980,088 + Pf6N2E2_4278 0.78 -0.4 4,980,088 + Pf6N2E2_4278 0.78 +0.2 4,980,088 + Pf6N2E2_4278 0.78 -0.9 4,980,088 + Pf6N2E2_4278 0.78 -0.9 4,980,089 - Pf6N2E2_4278 0.78 +0.0 4,980,089 - Pf6N2E2_4278 0.78 -0.8 4,980,089 - Pf6N2E2_4278 0.78 -0.0 4,980,089 - Pf6N2E2_4278 0.78 -0.2 4,980,089 - Pf6N2E2_4278 0.78 -2.2 4,980,232 + Pf6N2E2_4278 0.89 +0.3 4,980,232 + Pf6N2E2_4278 0.89 -1.6 4,980,232 + Pf6N2E2_4278 0.89 -1.0 4,980,233 - Pf6N2E2_4278 0.89 +1.1 4,980,235 + Pf6N2E2_4278 0.89 -0.0 4,980,236 - Pf6N2E2_4278 0.89 -0.6 4,980,236 - Pf6N2E2_4278 0.89 -2.3 4,980,283 - -0.6 4,980,283 - +0.6 4,980,319 + -0.7 4,980,319 + -2.6 4,980,320 - +0.3 4,980,320 - -0.4 4,980,400 + +0.1 4,980,400 + +0.2 4,980,400 + +0.2 4,980,400 + +0.4 4,980,400 + +0.6 4,980,401 - -0.7 4,980,401 - +0.4 4,980,401 - -0.1 4,980,401 - -0.5 4,980,401 - -0.6 4,980,401 - -0.2 4,980,401 - -0.5 4,980,401 - -0.0 4,980,574 - -1.9 4,980,686 + Pf6N2E2_4279 0.15 -0.2 4,980,686 + Pf6N2E2_4279 0.15 -0.9 4,980,842 + Pf6N2E2_4279 0.24 +0.1 4,980,843 - Pf6N2E2_4279 0.24 -2.1 4,980,843 - Pf6N2E2_4279 0.24 -0.7 4,981,157 - Pf6N2E2_4279 0.41 -2.0 4,981,214 + Pf6N2E2_4279 0.45 -0.8 4,981,214 + Pf6N2E2_4279 0.45 -1.1 4,981,215 - Pf6N2E2_4279 0.45 -0.0 4,981,215 - Pf6N2E2_4279 0.45 +0.7 4,981,215 - Pf6N2E2_4279 0.45 -3.0 4,981,215 - Pf6N2E2_4279 0.45 +0.3 4,981,215 - Pf6N2E2_4279 0.45 -2.1 4,981,215 - Pf6N2E2_4279 0.45 -0.8 4,981,215 - Pf6N2E2_4279 0.45 -1.5 4,981,215 - Pf6N2E2_4279 0.45 -1.0 4,981,215 - Pf6N2E2_4279 0.45 -0.5 4,981,215 - Pf6N2E2_4279 0.45 -0.8 4,981,220 + Pf6N2E2_4279 0.45 -0.5 4,981,220 + Pf6N2E2_4279 0.45 +0.1 4,981,238 + Pf6N2E2_4279 0.46 -2.0 4,981,238 + Pf6N2E2_4279 0.46 -0.1 4,981,239 - Pf6N2E2_4279 0.46 -1.5 4,981,239 - Pf6N2E2_4279 0.46 +0.6 4,981,239 - Pf6N2E2_4279 0.46 -1.0 4,981,296 + Pf6N2E2_4279 0.49 +0.1
Or see this region's nucleotide sequence