Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4278

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4277 and Pf6N2E2_4278 are separated by 208 nucleotidesPf6N2E2_4278 and Pf6N2E2_4279 are separated by 13 nucleotides Pf6N2E2_4277 - LysR family transcriptional regulator PA5437, at 4,977,828 to 4,978,769 _4277 Pf6N2E2_4278 - Pyruvate carboxyl transferase subunit A (EC 6.4.1.1), at 4,978,978 to 4,980,393 _4278 Pf6N2E2_4279 - Pyruvate carboxyl transferase subunit B (EC 6.4.1.1), at 4,980,407 to 4,982,215 _4279 Position (kb) 4978 4979 4980 4981Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4978.200 kb on + strand, within Pf6N2E2_4277at 4978.205 kb on + strand, within Pf6N2E2_4277at 4978.205 kb on + strand, within Pf6N2E2_4277at 4978.205 kb on + strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.207 kb on + strand, within Pf6N2E2_4277at 4978.207 kb on + strand, within Pf6N2E2_4277at 4978.208 kb on - strand, within Pf6N2E2_4277at 4978.208 kb on - strand, within Pf6N2E2_4277at 4978.208 kb on - strand, within Pf6N2E2_4277at 4978.208 kb on - strand, within Pf6N2E2_4277at 4978.462 kb on + strand, within Pf6N2E2_4277at 4978.462 kb on + strand, within Pf6N2E2_4277at 4978.462 kb on + strand, within Pf6N2E2_4277at 4978.463 kb on - strand, within Pf6N2E2_4277at 4978.463 kb on - strand, within Pf6N2E2_4277at 4978.463 kb on - strand, within Pf6N2E2_4277at 4978.604 kb on - strand, within Pf6N2E2_4277at 4978.604 kb on - strand, within Pf6N2E2_4277at 4978.617 kb on + strand, within Pf6N2E2_4277at 4978.617 kb on + strand, within Pf6N2E2_4277at 4978.617 kb on + strand, within Pf6N2E2_4277at 4978.617 kb on + strand, within Pf6N2E2_4277at 4978.617 kb on + strand, within Pf6N2E2_4277at 4978.618 kb on - strand, within Pf6N2E2_4277at 4978.618 kb on - strand, within Pf6N2E2_4277at 4978.618 kb on - strand, within Pf6N2E2_4277at 4978.618 kb on - strand, within Pf6N2E2_4277at 4978.618 kb on - strand, within Pf6N2E2_4277at 4978.621 kb on + strand, within Pf6N2E2_4277at 4978.621 kb on + strand, within Pf6N2E2_4277at 4978.621 kb on + strand, within Pf6N2E2_4277at 4978.621 kb on + strand, within Pf6N2E2_4277at 4978.621 kb on + strand, within Pf6N2E2_4277at 4978.621 kb on + strand, within Pf6N2E2_4277at 4978.621 kb on + strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.622 kb on - strand, within Pf6N2E2_4277at 4978.668 kb on + strand, within Pf6N2E2_4277at 4978.718 kb on - strandat 4978.718 kb on - strandat 4978.718 kb on - strandat 4978.818 kb on + strandat 4978.819 kb on - strandat 4978.890 kb on - strandat 4978.913 kb on + strandat 4978.914 kb on - strandat 4978.953 kb on - strandat 4978.953 kb on - strandat 4978.982 kb on + strandat 4978.982 kb on + strandat 4979.387 kb on + strand, within Pf6N2E2_4278at 4979.734 kb on + strand, within Pf6N2E2_4278at 4979.734 kb on + strand, within Pf6N2E2_4278at 4979.735 kb on - strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.824 kb on + strand, within Pf6N2E2_4278at 4979.825 kb on - strand, within Pf6N2E2_4278at 4979.825 kb on - strand, within Pf6N2E2_4278at 4979.825 kb on - strand, within Pf6N2E2_4278at 4979.985 kb on + strand, within Pf6N2E2_4278at 4980.044 kb on - strand, within Pf6N2E2_4278at 4980.046 kb on + strand, within Pf6N2E2_4278at 4980.046 kb on + strand, within Pf6N2E2_4278at 4980.046 kb on + strand, within Pf6N2E2_4278at 4980.046 kb on + strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.047 kb on - strand, within Pf6N2E2_4278at 4980.088 kb on + strand, within Pf6N2E2_4278at 4980.088 kb on + strand, within Pf6N2E2_4278at 4980.088 kb on + strand, within Pf6N2E2_4278at 4980.088 kb on + strand, within Pf6N2E2_4278at 4980.088 kb on + strand, within Pf6N2E2_4278at 4980.089 kb on - strand, within Pf6N2E2_4278at 4980.089 kb on - strand, within Pf6N2E2_4278at 4980.089 kb on - strand, within Pf6N2E2_4278at 4980.089 kb on - strand, within Pf6N2E2_4278at 4980.089 kb on - strand, within Pf6N2E2_4278at 4980.232 kb on + strand, within Pf6N2E2_4278at 4980.232 kb on + strand, within Pf6N2E2_4278at 4980.232 kb on + strand, within Pf6N2E2_4278at 4980.233 kb on - strand, within Pf6N2E2_4278at 4980.235 kb on + strand, within Pf6N2E2_4278at 4980.236 kb on - strand, within Pf6N2E2_4278at 4980.236 kb on - strand, within Pf6N2E2_4278at 4980.283 kb on - strandat 4980.283 kb on - strandat 4980.319 kb on + strandat 4980.319 kb on + strandat 4980.320 kb on - strandat 4980.320 kb on - strandat 4980.400 kb on + strandat 4980.400 kb on + strandat 4980.400 kb on + strandat 4980.400 kb on + strandat 4980.400 kb on + strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.401 kb on - strandat 4980.574 kb on - strandat 4980.686 kb on + strand, within Pf6N2E2_4279at 4980.686 kb on + strand, within Pf6N2E2_4279at 4980.842 kb on + strand, within Pf6N2E2_4279at 4980.843 kb on - strand, within Pf6N2E2_4279at 4980.843 kb on - strand, within Pf6N2E2_4279at 4981.157 kb on - strand, within Pf6N2E2_4279at 4981.214 kb on + strand, within Pf6N2E2_4279at 4981.214 kb on + strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.215 kb on - strand, within Pf6N2E2_4279at 4981.220 kb on + strand, within Pf6N2E2_4279at 4981.220 kb on + strand, within Pf6N2E2_4279at 4981.238 kb on + strand, within Pf6N2E2_4279at 4981.238 kb on + strand, within Pf6N2E2_4279at 4981.239 kb on - strand, within Pf6N2E2_4279at 4981.239 kb on - strand, within Pf6N2E2_4279at 4981.239 kb on - strand, within Pf6N2E2_4279at 4981.296 kb on + strand, within Pf6N2E2_4279

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,978,200 + Pf6N2E2_4277 0.39 +0.8
4,978,205 + Pf6N2E2_4277 0.40 -0.4
4,978,205 + Pf6N2E2_4277 0.40 +0.2
4,978,205 + Pf6N2E2_4277 0.40 +0.3
4,978,206 - Pf6N2E2_4277 0.40 +0.7
4,978,206 - Pf6N2E2_4277 0.40 +0.2
4,978,206 - Pf6N2E2_4277 0.40 -0.8
4,978,206 - Pf6N2E2_4277 0.40 +0.6
4,978,206 - Pf6N2E2_4277 0.40 +4.3
4,978,206 - Pf6N2E2_4277 0.40 -0.2
4,978,206 - Pf6N2E2_4277 0.40 +0.5
4,978,207 + Pf6N2E2_4277 0.40 -1.9
4,978,207 + Pf6N2E2_4277 0.40 +0.2
4,978,208 - Pf6N2E2_4277 0.40 +0.5
4,978,208 - Pf6N2E2_4277 0.40 +0.2
4,978,208 - Pf6N2E2_4277 0.40 -1.2
4,978,208 - Pf6N2E2_4277 0.40 +0.1
4,978,462 + Pf6N2E2_4277 0.67 +0.2
4,978,462 + Pf6N2E2_4277 0.67 +1.0
4,978,462 + Pf6N2E2_4277 0.67 -0.3
4,978,463 - Pf6N2E2_4277 0.67 +0.9
4,978,463 - Pf6N2E2_4277 0.67 -0.4
4,978,463 - Pf6N2E2_4277 0.67 +0.1
4,978,604 - Pf6N2E2_4277 0.82 +0.1
4,978,604 - Pf6N2E2_4277 0.82 +0.9
4,978,617 + Pf6N2E2_4277 0.84 +0.8
4,978,617 + Pf6N2E2_4277 0.84 +0.7
4,978,617 + Pf6N2E2_4277 0.84 +0.7
4,978,617 + Pf6N2E2_4277 0.84 -0.2
4,978,617 + Pf6N2E2_4277 0.84 +0.8
4,978,618 - Pf6N2E2_4277 0.84 -0.3
4,978,618 - Pf6N2E2_4277 0.84 +0.4
4,978,618 - Pf6N2E2_4277 0.84 -1.8
4,978,618 - Pf6N2E2_4277 0.84 +1.4
4,978,618 - Pf6N2E2_4277 0.84 +0.8
4,978,621 + Pf6N2E2_4277 0.84 +1.1
4,978,621 + Pf6N2E2_4277 0.84 +1.6
4,978,621 + Pf6N2E2_4277 0.84 +0.3
4,978,621 + Pf6N2E2_4277 0.84 +1.1
4,978,621 + Pf6N2E2_4277 0.84 +0.3
4,978,621 + Pf6N2E2_4277 0.84 +1.4
4,978,621 + Pf6N2E2_4277 0.84 +0.8
4,978,622 - Pf6N2E2_4277 0.84 -0.6
4,978,622 - Pf6N2E2_4277 0.84 +0.7
4,978,622 - Pf6N2E2_4277 0.84 +1.0
4,978,622 - Pf6N2E2_4277 0.84 +0.9
4,978,622 - Pf6N2E2_4277 0.84 -0.5
4,978,622 - Pf6N2E2_4277 0.84 -0.0
4,978,622 - Pf6N2E2_4277 0.84 +0.3
4,978,622 - Pf6N2E2_4277 0.84 +0.3
4,978,622 - Pf6N2E2_4277 0.84 +1.5
4,978,622 - Pf6N2E2_4277 0.84 +0.8
4,978,622 - Pf6N2E2_4277 0.84 -0.2
4,978,622 - Pf6N2E2_4277 0.84 +0.7
4,978,668 + Pf6N2E2_4277 0.89 +0.7
4,978,718 - -0.0
4,978,718 - +0.6
4,978,718 - -1.1
4,978,818 + +1.4
4,978,819 - +0.2
4,978,890 - +0.9
4,978,913 + +0.2
4,978,914 - +0.8
4,978,953 - -1.1
4,978,953 - +0.6
4,978,982 + +0.8
4,978,982 + +0.4
4,979,387 + Pf6N2E2_4278 0.29 -1.0
4,979,734 + Pf6N2E2_4278 0.53 +0.2
4,979,734 + Pf6N2E2_4278 0.53 +0.2
4,979,735 - Pf6N2E2_4278 0.53 +0.7
4,979,824 + Pf6N2E2_4278 0.60 +2.4
4,979,824 + Pf6N2E2_4278 0.60 -1.8
4,979,824 + Pf6N2E2_4278 0.60 -1.1
4,979,824 + Pf6N2E2_4278 0.60 -1.0
4,979,824 + Pf6N2E2_4278 0.60 -1.3
4,979,824 + Pf6N2E2_4278 0.60 -1.1
4,979,824 + Pf6N2E2_4278 0.60 -0.7
4,979,824 + Pf6N2E2_4278 0.60 -1.9
4,979,825 - Pf6N2E2_4278 0.60 +0.9
4,979,825 - Pf6N2E2_4278 0.60 -1.6
4,979,825 - Pf6N2E2_4278 0.60 -2.2
4,979,985 + Pf6N2E2_4278 0.71 -0.3
4,980,044 - Pf6N2E2_4278 0.75 +0.1
4,980,046 + Pf6N2E2_4278 0.75 -0.6
4,980,046 + Pf6N2E2_4278 0.75 -1.5
4,980,046 + Pf6N2E2_4278 0.75 -1.0
4,980,046 + Pf6N2E2_4278 0.75 -1.5
4,980,047 - Pf6N2E2_4278 0.75 -0.2
4,980,047 - Pf6N2E2_4278 0.75 -0.4
4,980,047 - Pf6N2E2_4278 0.75 -0.7
4,980,047 - Pf6N2E2_4278 0.75 -2.8
4,980,047 - Pf6N2E2_4278 0.75 -1.2
4,980,047 - Pf6N2E2_4278 0.75 -1.1
4,980,088 + Pf6N2E2_4278 0.78 -1.6
4,980,088 + Pf6N2E2_4278 0.78 -0.4
4,980,088 + Pf6N2E2_4278 0.78 +0.2
4,980,088 + Pf6N2E2_4278 0.78 -0.9
4,980,088 + Pf6N2E2_4278 0.78 -0.9
4,980,089 - Pf6N2E2_4278 0.78 +0.0
4,980,089 - Pf6N2E2_4278 0.78 -0.8
4,980,089 - Pf6N2E2_4278 0.78 -0.0
4,980,089 - Pf6N2E2_4278 0.78 -0.2
4,980,089 - Pf6N2E2_4278 0.78 -2.2
4,980,232 + Pf6N2E2_4278 0.89 +0.3
4,980,232 + Pf6N2E2_4278 0.89 -1.6
4,980,232 + Pf6N2E2_4278 0.89 -1.0
4,980,233 - Pf6N2E2_4278 0.89 +1.1
4,980,235 + Pf6N2E2_4278 0.89 -0.0
4,980,236 - Pf6N2E2_4278 0.89 -0.6
4,980,236 - Pf6N2E2_4278 0.89 -2.3
4,980,283 - -0.6
4,980,283 - +0.6
4,980,319 + -0.7
4,980,319 + -2.6
4,980,320 - +0.3
4,980,320 - -0.4
4,980,400 + +0.1
4,980,400 + +0.2
4,980,400 + +0.2
4,980,400 + +0.4
4,980,400 + +0.6
4,980,401 - -0.7
4,980,401 - +0.4
4,980,401 - -0.1
4,980,401 - -0.5
4,980,401 - -0.6
4,980,401 - -0.2
4,980,401 - -0.5
4,980,401 - -0.0
4,980,574 - -1.9
4,980,686 + Pf6N2E2_4279 0.15 -0.2
4,980,686 + Pf6N2E2_4279 0.15 -0.9
4,980,842 + Pf6N2E2_4279 0.24 +0.1
4,980,843 - Pf6N2E2_4279 0.24 -2.1
4,980,843 - Pf6N2E2_4279 0.24 -0.7
4,981,157 - Pf6N2E2_4279 0.41 -2.0
4,981,214 + Pf6N2E2_4279 0.45 -0.8
4,981,214 + Pf6N2E2_4279 0.45 -1.1
4,981,215 - Pf6N2E2_4279 0.45 -0.0
4,981,215 - Pf6N2E2_4279 0.45 +0.7
4,981,215 - Pf6N2E2_4279 0.45 -3.0
4,981,215 - Pf6N2E2_4279 0.45 +0.3
4,981,215 - Pf6N2E2_4279 0.45 -2.1
4,981,215 - Pf6N2E2_4279 0.45 -0.8
4,981,215 - Pf6N2E2_4279 0.45 -1.5
4,981,215 - Pf6N2E2_4279 0.45 -1.0
4,981,215 - Pf6N2E2_4279 0.45 -0.5
4,981,215 - Pf6N2E2_4279 0.45 -0.8
4,981,220 + Pf6N2E2_4279 0.45 -0.5
4,981,220 + Pf6N2E2_4279 0.45 +0.1
4,981,238 + Pf6N2E2_4279 0.46 -2.0
4,981,238 + Pf6N2E2_4279 0.46 -0.1
4,981,239 - Pf6N2E2_4279 0.46 -1.5
4,981,239 - Pf6N2E2_4279 0.46 +0.6
4,981,239 - Pf6N2E2_4279 0.46 -1.0
4,981,296 + Pf6N2E2_4279 0.49 +0.1

Or see this region's nucleotide sequence