Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4169

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4167 and Pf6N2E2_4168 overlap by 8 nucleotidesPf6N2E2_4168 and Pf6N2E2_4169 are separated by 37 nucleotidesPf6N2E2_4169 and Pf6N2E2_4170 are separated by 101 nucleotides Pf6N2E2_4167 - Zinc ABC transporter, ATP-binding protein ZnuC, at 4,849,102 to 4,849,884 _4167 Pf6N2E2_4168 - Zinc ABC transporter, inner membrane permease protein ZnuB, at 4,849,877 to 4,850,665 _4168 Pf6N2E2_4169 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,850,703 to 4,851,416 _4169 Pf6N2E2_4170 - Catalase (EC 1.11.1.6), at 4,851,518 to 4,853,656 _4170 Position (kb) 4850 4851 4852Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4849.783 kb on + strand, within Pf6N2E2_4167at 4849.783 kb on + strand, within Pf6N2E2_4167at 4849.783 kb on + strand, within Pf6N2E2_4167at 4849.783 kb on + strand, within Pf6N2E2_4167at 4849.784 kb on - strand, within Pf6N2E2_4167at 4849.784 kb on - strand, within Pf6N2E2_4167at 4849.896 kb on - strandat 4849.896 kb on - strandat 4849.973 kb on + strand, within Pf6N2E2_4168at 4849.973 kb on + strand, within Pf6N2E2_4168at 4850.085 kb on + strand, within Pf6N2E2_4168at 4850.085 kb on + strand, within Pf6N2E2_4168at 4850.086 kb on - strand, within Pf6N2E2_4168at 4850.175 kb on + strand, within Pf6N2E2_4168at 4850.176 kb on - strand, within Pf6N2E2_4168at 4850.178 kb on + strand, within Pf6N2E2_4168at 4850.178 kb on + strand, within Pf6N2E2_4168at 4850.178 kb on + strand, within Pf6N2E2_4168at 4850.178 kb on + strand, within Pf6N2E2_4168at 4850.179 kb on - strand, within Pf6N2E2_4168at 4850.179 kb on - strand, within Pf6N2E2_4168at 4850.179 kb on - strand, within Pf6N2E2_4168at 4850.179 kb on - strand, within Pf6N2E2_4168at 4850.216 kb on + strand, within Pf6N2E2_4168at 4850.216 kb on + strand, within Pf6N2E2_4168at 4850.217 kb on - strand, within Pf6N2E2_4168at 4850.217 kb on - strand, within Pf6N2E2_4168at 4850.217 kb on - strand, within Pf6N2E2_4168at 4850.217 kb on - strand, within Pf6N2E2_4168at 4850.217 kb on - strand, within Pf6N2E2_4168at 4850.217 kb on - strand, within Pf6N2E2_4168at 4850.452 kb on + strand, within Pf6N2E2_4168at 4850.453 kb on - strand, within Pf6N2E2_4168at 4850.647 kb on - strandat 4850.663 kb on + strandat 4850.663 kb on + strandat 4850.663 kb on + strandat 4850.688 kb on + strandat 4850.688 kb on + strandat 4850.688 kb on + strandat 4850.688 kb on + strandat 4850.771 kb on + strandat 4850.772 kb on - strandat 4850.919 kb on + strand, within Pf6N2E2_4169at 4850.943 kb on + strand, within Pf6N2E2_4169at 4850.943 kb on + strand, within Pf6N2E2_4169at 4850.944 kb on - strand, within Pf6N2E2_4169at 4850.944 kb on - strand, within Pf6N2E2_4169at 4850.944 kb on - strand, within Pf6N2E2_4169at 4851.188 kb on - strand, within Pf6N2E2_4169at 4851.196 kb on + strand, within Pf6N2E2_4169at 4851.196 kb on + strand, within Pf6N2E2_4169at 4851.196 kb on + strand, within Pf6N2E2_4169at 4851.246 kb on + strand, within Pf6N2E2_4169at 4851.247 kb on - strand, within Pf6N2E2_4169at 4851.247 kb on - strand, within Pf6N2E2_4169at 4851.247 kb on - strand, within Pf6N2E2_4169at 4851.247 kb on - strand, within Pf6N2E2_4169at 4851.289 kb on - strand, within Pf6N2E2_4169at 4851.407 kb on + strandat 4851.407 kb on + strandat 4851.407 kb on + strandat 4851.407 kb on + strandat 4851.407 kb on + strandat 4851.408 kb on - strandat 4851.414 kb on + strandat 4851.414 kb on + strandat 4851.535 kb on + strandat 4851.542 kb on - strandat 4851.702 kb on + strandat 4851.702 kb on + strandat 4851.703 kb on - strandat 4851.703 kb on - strandat 4851.717 kb on + strandat 4851.717 kb on + strandat 4851.717 kb on + strandat 4851.717 kb on + strandat 4851.717 kb on + strandat 4851.717 kb on + strandat 4851.718 kb on - strandat 4851.718 kb on - strandat 4851.718 kb on - strandat 4852.063 kb on + strand, within Pf6N2E2_4170at 4852.118 kb on - strand, within Pf6N2E2_4170at 4852.188 kb on + strand, within Pf6N2E2_4170at 4852.233 kb on + strand, within Pf6N2E2_4170at 4852.233 kb on + strand, within Pf6N2E2_4170at 4852.233 kb on + strand, within Pf6N2E2_4170at 4852.233 kb on + strand, within Pf6N2E2_4170at 4852.233 kb on + strand, within Pf6N2E2_4170at 4852.234 kb on - strand, within Pf6N2E2_4170at 4852.234 kb on - strand, within Pf6N2E2_4170at 4852.293 kb on + strand, within Pf6N2E2_4170at 4852.293 kb on + strand, within Pf6N2E2_4170at 4852.294 kb on - strand, within Pf6N2E2_4170at 4852.294 kb on - strand, within Pf6N2E2_4170at 4852.294 kb on - strand, within Pf6N2E2_4170at 4852.389 kb on + strand, within Pf6N2E2_4170

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,849,783 + Pf6N2E2_4167 0.87 -0.1
4,849,783 + Pf6N2E2_4167 0.87 +0.7
4,849,783 + Pf6N2E2_4167 0.87 +0.6
4,849,783 + Pf6N2E2_4167 0.87 +1.4
4,849,784 - Pf6N2E2_4167 0.87 +1.5
4,849,784 - Pf6N2E2_4167 0.87 +0.9
4,849,896 - +0.0
4,849,896 - -0.5
4,849,973 + Pf6N2E2_4168 0.12 -0.2
4,849,973 + Pf6N2E2_4168 0.12 +1.0
4,850,085 + Pf6N2E2_4168 0.26 +1.2
4,850,085 + Pf6N2E2_4168 0.26 -0.2
4,850,086 - Pf6N2E2_4168 0.26 +0.5
4,850,175 + Pf6N2E2_4168 0.38 -0.6
4,850,176 - Pf6N2E2_4168 0.38 +2.9
4,850,178 + Pf6N2E2_4168 0.38 +0.1
4,850,178 + Pf6N2E2_4168 0.38 -0.2
4,850,178 + Pf6N2E2_4168 0.38 -1.1
4,850,178 + Pf6N2E2_4168 0.38 -0.4
4,850,179 - Pf6N2E2_4168 0.38 +1.7
4,850,179 - Pf6N2E2_4168 0.38 -0.1
4,850,179 - Pf6N2E2_4168 0.38 +1.1
4,850,179 - Pf6N2E2_4168 0.38 -0.6
4,850,216 + Pf6N2E2_4168 0.43 +1.0
4,850,216 + Pf6N2E2_4168 0.43 +1.0
4,850,217 - Pf6N2E2_4168 0.43 +0.3
4,850,217 - Pf6N2E2_4168 0.43 -1.3
4,850,217 - Pf6N2E2_4168 0.43 -2.5
4,850,217 - Pf6N2E2_4168 0.43 +0.1
4,850,217 - Pf6N2E2_4168 0.43 -1.1
4,850,217 - Pf6N2E2_4168 0.43 +0.4
4,850,452 + Pf6N2E2_4168 0.73 +1.4
4,850,453 - Pf6N2E2_4168 0.73 +1.5
4,850,647 - -2.8
4,850,663 + -0.4
4,850,663 + -0.5
4,850,663 + -0.2
4,850,688 + +1.6
4,850,688 + +1.3
4,850,688 + +1.8
4,850,688 + +2.9
4,850,771 + -0.5
4,850,772 - -0.3
4,850,919 + Pf6N2E2_4169 0.30 -0.5
4,850,943 + Pf6N2E2_4169 0.34 +0.4
4,850,943 + Pf6N2E2_4169 0.34 -1.8
4,850,944 - Pf6N2E2_4169 0.34 -2.6
4,850,944 - Pf6N2E2_4169 0.34 -0.5
4,850,944 - Pf6N2E2_4169 0.34 -1.0
4,851,188 - Pf6N2E2_4169 0.68 -1.8
4,851,196 + Pf6N2E2_4169 0.69 -0.3
4,851,196 + Pf6N2E2_4169 0.69 -2.4
4,851,196 + Pf6N2E2_4169 0.69 -0.2
4,851,246 + Pf6N2E2_4169 0.76 -1.9
4,851,247 - Pf6N2E2_4169 0.76 -0.6
4,851,247 - Pf6N2E2_4169 0.76 +0.9
4,851,247 - Pf6N2E2_4169 0.76 -0.8
4,851,247 - Pf6N2E2_4169 0.76 -1.1
4,851,289 - Pf6N2E2_4169 0.82 -1.1
4,851,407 + -0.1
4,851,407 + -1.0
4,851,407 + -1.5
4,851,407 + -0.2
4,851,407 + -1.1
4,851,408 - -0.6
4,851,414 + -2.0
4,851,414 + +0.8
4,851,535 + +1.6
4,851,542 - -0.6
4,851,702 + +0.7
4,851,702 + +0.8
4,851,703 - +0.9
4,851,703 - +0.8
4,851,717 + +0.6
4,851,717 + +0.4
4,851,717 + -0.1
4,851,717 + -0.3
4,851,717 + +1.1
4,851,717 + +0.7
4,851,718 - -0.4
4,851,718 - +0.6
4,851,718 - -1.1
4,852,063 + Pf6N2E2_4170 0.25 +0.5
4,852,118 - Pf6N2E2_4170 0.28 -0.2
4,852,188 + Pf6N2E2_4170 0.31 -0.3
4,852,233 + Pf6N2E2_4170 0.33 +1.3
4,852,233 + Pf6N2E2_4170 0.33 -0.9
4,852,233 + Pf6N2E2_4170 0.33 -0.5
4,852,233 + Pf6N2E2_4170 0.33 -0.1
4,852,233 + Pf6N2E2_4170 0.33 +0.8
4,852,234 - Pf6N2E2_4170 0.33 -0.2
4,852,234 - Pf6N2E2_4170 0.33 +0.5
4,852,293 + Pf6N2E2_4170 0.36 +1.0
4,852,293 + Pf6N2E2_4170 0.36 +1.9
4,852,294 - Pf6N2E2_4170 0.36 +1.1
4,852,294 - Pf6N2E2_4170 0.36 -1.6
4,852,294 - Pf6N2E2_4170 0.36 -1.1
4,852,389 + Pf6N2E2_4170 0.41 -0.0

Or see this region's nucleotide sequence