Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4167 and Pf6N2E2_4168 overlap by 8 nucleotides Pf6N2E2_4168 and Pf6N2E2_4169 are separated by 37 nucleotides Pf6N2E2_4169 and Pf6N2E2_4170 are separated by 101 nucleotides
Pf6N2E2_4167 - Zinc ABC transporter, ATP-binding protein ZnuC, at 4,849,102 to 4,849,884
_4167
Pf6N2E2_4168 - Zinc ABC transporter, inner membrane permease protein ZnuB, at 4,849,877 to 4,850,665
_4168
Pf6N2E2_4169 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,850,703 to 4,851,416
_4169
Pf6N2E2_4170 - Catalase (EC 1.11.1.6), at 4,851,518 to 4,853,656
_4170
Position (kb)
4850
4851
4852 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4849.783 kb on + strand, within Pf6N2E2_4167 at 4849.783 kb on + strand, within Pf6N2E2_4167 at 4849.783 kb on + strand, within Pf6N2E2_4167 at 4849.783 kb on + strand, within Pf6N2E2_4167 at 4849.784 kb on - strand, within Pf6N2E2_4167 at 4849.784 kb on - strand, within Pf6N2E2_4167 at 4849.896 kb on - strand at 4849.896 kb on - strand at 4849.973 kb on + strand, within Pf6N2E2_4168 at 4849.973 kb on + strand, within Pf6N2E2_4168 at 4850.085 kb on + strand, within Pf6N2E2_4168 at 4850.085 kb on + strand, within Pf6N2E2_4168 at 4850.086 kb on - strand, within Pf6N2E2_4168 at 4850.175 kb on + strand, within Pf6N2E2_4168 at 4850.176 kb on - strand, within Pf6N2E2_4168 at 4850.178 kb on + strand, within Pf6N2E2_4168 at 4850.178 kb on + strand, within Pf6N2E2_4168 at 4850.178 kb on + strand, within Pf6N2E2_4168 at 4850.178 kb on + strand, within Pf6N2E2_4168 at 4850.179 kb on - strand, within Pf6N2E2_4168 at 4850.179 kb on - strand, within Pf6N2E2_4168 at 4850.179 kb on - strand, within Pf6N2E2_4168 at 4850.179 kb on - strand, within Pf6N2E2_4168 at 4850.216 kb on + strand, within Pf6N2E2_4168 at 4850.216 kb on + strand, within Pf6N2E2_4168 at 4850.217 kb on - strand, within Pf6N2E2_4168 at 4850.217 kb on - strand, within Pf6N2E2_4168 at 4850.217 kb on - strand, within Pf6N2E2_4168 at 4850.217 kb on - strand, within Pf6N2E2_4168 at 4850.217 kb on - strand, within Pf6N2E2_4168 at 4850.217 kb on - strand, within Pf6N2E2_4168 at 4850.452 kb on + strand, within Pf6N2E2_4168 at 4850.453 kb on - strand, within Pf6N2E2_4168 at 4850.647 kb on - strand at 4850.663 kb on + strand at 4850.663 kb on + strand at 4850.663 kb on + strand at 4850.688 kb on + strand at 4850.688 kb on + strand at 4850.688 kb on + strand at 4850.688 kb on + strand at 4850.771 kb on + strand at 4850.772 kb on - strand at 4850.919 kb on + strand, within Pf6N2E2_4169 at 4850.943 kb on + strand, within Pf6N2E2_4169 at 4850.943 kb on + strand, within Pf6N2E2_4169 at 4850.944 kb on - strand, within Pf6N2E2_4169 at 4850.944 kb on - strand, within Pf6N2E2_4169 at 4850.944 kb on - strand, within Pf6N2E2_4169 at 4851.188 kb on - strand, within Pf6N2E2_4169 at 4851.196 kb on + strand, within Pf6N2E2_4169 at 4851.196 kb on + strand, within Pf6N2E2_4169 at 4851.196 kb on + strand, within Pf6N2E2_4169 at 4851.246 kb on + strand, within Pf6N2E2_4169 at 4851.247 kb on - strand, within Pf6N2E2_4169 at 4851.247 kb on - strand, within Pf6N2E2_4169 at 4851.247 kb on - strand, within Pf6N2E2_4169 at 4851.247 kb on - strand, within Pf6N2E2_4169 at 4851.289 kb on - strand, within Pf6N2E2_4169 at 4851.407 kb on + strand at 4851.407 kb on + strand at 4851.407 kb on + strand at 4851.407 kb on + strand at 4851.407 kb on + strand at 4851.408 kb on - strand at 4851.414 kb on + strand at 4851.414 kb on + strand at 4851.535 kb on + strand at 4851.542 kb on - strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.717 kb on + strand at 4851.717 kb on + strand at 4851.717 kb on + strand at 4851.717 kb on + strand at 4851.717 kb on + strand at 4851.717 kb on + strand at 4851.718 kb on - strand at 4851.718 kb on - strand at 4851.718 kb on - strand at 4852.063 kb on + strand, within Pf6N2E2_4170 at 4852.118 kb on - strand, within Pf6N2E2_4170 at 4852.188 kb on + strand, within Pf6N2E2_4170 at 4852.233 kb on + strand, within Pf6N2E2_4170 at 4852.233 kb on + strand, within Pf6N2E2_4170 at 4852.233 kb on + strand, within Pf6N2E2_4170 at 4852.233 kb on + strand, within Pf6N2E2_4170 at 4852.233 kb on + strand, within Pf6N2E2_4170 at 4852.234 kb on - strand, within Pf6N2E2_4170 at 4852.234 kb on - strand, within Pf6N2E2_4170 at 4852.293 kb on + strand, within Pf6N2E2_4170 at 4852.293 kb on + strand, within Pf6N2E2_4170 at 4852.294 kb on - strand, within Pf6N2E2_4170 at 4852.294 kb on - strand, within Pf6N2E2_4170 at 4852.294 kb on - strand, within Pf6N2E2_4170 at 4852.389 kb on + strand, within Pf6N2E2_4170
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,849,783 + Pf6N2E2_4167 0.87 -0.1 4,849,783 + Pf6N2E2_4167 0.87 +0.7 4,849,783 + Pf6N2E2_4167 0.87 +0.6 4,849,783 + Pf6N2E2_4167 0.87 +1.4 4,849,784 - Pf6N2E2_4167 0.87 +1.5 4,849,784 - Pf6N2E2_4167 0.87 +0.9 4,849,896 - +0.0 4,849,896 - -0.5 4,849,973 + Pf6N2E2_4168 0.12 -0.2 4,849,973 + Pf6N2E2_4168 0.12 +1.0 4,850,085 + Pf6N2E2_4168 0.26 +1.2 4,850,085 + Pf6N2E2_4168 0.26 -0.2 4,850,086 - Pf6N2E2_4168 0.26 +0.5 4,850,175 + Pf6N2E2_4168 0.38 -0.6 4,850,176 - Pf6N2E2_4168 0.38 +2.9 4,850,178 + Pf6N2E2_4168 0.38 +0.1 4,850,178 + Pf6N2E2_4168 0.38 -0.2 4,850,178 + Pf6N2E2_4168 0.38 -1.1 4,850,178 + Pf6N2E2_4168 0.38 -0.4 4,850,179 - Pf6N2E2_4168 0.38 +1.7 4,850,179 - Pf6N2E2_4168 0.38 -0.1 4,850,179 - Pf6N2E2_4168 0.38 +1.1 4,850,179 - Pf6N2E2_4168 0.38 -0.6 4,850,216 + Pf6N2E2_4168 0.43 +1.0 4,850,216 + Pf6N2E2_4168 0.43 +1.0 4,850,217 - Pf6N2E2_4168 0.43 +0.3 4,850,217 - Pf6N2E2_4168 0.43 -1.3 4,850,217 - Pf6N2E2_4168 0.43 -2.5 4,850,217 - Pf6N2E2_4168 0.43 +0.1 4,850,217 - Pf6N2E2_4168 0.43 -1.1 4,850,217 - Pf6N2E2_4168 0.43 +0.4 4,850,452 + Pf6N2E2_4168 0.73 +1.4 4,850,453 - Pf6N2E2_4168 0.73 +1.5 4,850,647 - -2.8 4,850,663 + -0.4 4,850,663 + -0.5 4,850,663 + -0.2 4,850,688 + +1.6 4,850,688 + +1.3 4,850,688 + +1.8 4,850,688 + +2.9 4,850,771 + -0.5 4,850,772 - -0.3 4,850,919 + Pf6N2E2_4169 0.30 -0.5 4,850,943 + Pf6N2E2_4169 0.34 +0.4 4,850,943 + Pf6N2E2_4169 0.34 -1.8 4,850,944 - Pf6N2E2_4169 0.34 -2.6 4,850,944 - Pf6N2E2_4169 0.34 -0.5 4,850,944 - Pf6N2E2_4169 0.34 -1.0 4,851,188 - Pf6N2E2_4169 0.68 -1.8 4,851,196 + Pf6N2E2_4169 0.69 -0.3 4,851,196 + Pf6N2E2_4169 0.69 -2.4 4,851,196 + Pf6N2E2_4169 0.69 -0.2 4,851,246 + Pf6N2E2_4169 0.76 -1.9 4,851,247 - Pf6N2E2_4169 0.76 -0.6 4,851,247 - Pf6N2E2_4169 0.76 +0.9 4,851,247 - Pf6N2E2_4169 0.76 -0.8 4,851,247 - Pf6N2E2_4169 0.76 -1.1 4,851,289 - Pf6N2E2_4169 0.82 -1.1 4,851,407 + -0.1 4,851,407 + -1.0 4,851,407 + -1.5 4,851,407 + -0.2 4,851,407 + -1.1 4,851,408 - -0.6 4,851,414 + -2.0 4,851,414 + +0.8 4,851,535 + +1.6 4,851,542 - -0.6 4,851,702 + +0.7 4,851,702 + +0.8 4,851,703 - +0.9 4,851,703 - +0.8 4,851,717 + +0.6 4,851,717 + +0.4 4,851,717 + -0.1 4,851,717 + -0.3 4,851,717 + +1.1 4,851,717 + +0.7 4,851,718 - -0.4 4,851,718 - +0.6 4,851,718 - -1.1 4,852,063 + Pf6N2E2_4170 0.25 +0.5 4,852,118 - Pf6N2E2_4170 0.28 -0.2 4,852,188 + Pf6N2E2_4170 0.31 -0.3 4,852,233 + Pf6N2E2_4170 0.33 +1.3 4,852,233 + Pf6N2E2_4170 0.33 -0.9 4,852,233 + Pf6N2E2_4170 0.33 -0.5 4,852,233 + Pf6N2E2_4170 0.33 -0.1 4,852,233 + Pf6N2E2_4170 0.33 +0.8 4,852,234 - Pf6N2E2_4170 0.33 -0.2 4,852,234 - Pf6N2E2_4170 0.33 +0.5 4,852,293 + Pf6N2E2_4170 0.36 +1.0 4,852,293 + Pf6N2E2_4170 0.36 +1.9 4,852,294 - Pf6N2E2_4170 0.36 +1.1 4,852,294 - Pf6N2E2_4170 0.36 -1.6 4,852,294 - Pf6N2E2_4170 0.36 -1.1 4,852,389 + Pf6N2E2_4170 0.41 -0.0
Or see this region's nucleotide sequence