Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4158 and Pf6N2E2_4159 are separated by 198 nucleotides Pf6N2E2_4159 and Pf6N2E2_4160 are separated by 46 nucleotides Pf6N2E2_4160 and Pf6N2E2_4161 are separated by 365 nucleotides
Pf6N2E2_4158 - Periplasmic thiol:disulfide interchange protein DsbA, at 4,840,322 to 4,840,963
_4158
Pf6N2E2_4159 - Cytochrome c4, at 4,841,162 to 4,841,773
_4159
Pf6N2E2_4160 - Cytochrome c5, at 4,841,820 to 4,841,936
_4160
Pf6N2E2_4161 - GTP-binding protein EngB, at 4,842,302 to 4,842,943
_4161
Position (kb)
4841
4842 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4840.969 kb on - strand at 4840.969 kb on - strand at 4840.969 kb on - strand at 4841.008 kb on - strand at 4841.008 kb on - strand at 4841.008 kb on - strand at 4841.037 kb on + strand at 4841.038 kb on - strand at 4841.038 kb on - strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.133 kb on + strand at 4841.134 kb on - strand at 4841.134 kb on - strand at 4841.134 kb on - strand at 4841.134 kb on - strand at 4841.134 kb on - strand at 4841.134 kb on - strand at 4841.134 kb on - strand at 4841.134 kb on - strand at 4841.134 kb on - strand at 4841.134 kb on - strand at 4841.134 kb on - strand at 4841.181 kb on + strand at 4841.182 kb on - strand at 4841.304 kb on - strand, within Pf6N2E2_4159 at 4841.304 kb on - strand, within Pf6N2E2_4159 at 4841.304 kb on - strand, within Pf6N2E2_4159 at 4841.307 kb on + strand, within Pf6N2E2_4159 at 4841.307 kb on + strand, within Pf6N2E2_4159 at 4841.308 kb on - strand, within Pf6N2E2_4159 at 4841.491 kb on - strand, within Pf6N2E2_4159 at 4841.644 kb on + strand, within Pf6N2E2_4159 at 4841.645 kb on - strand, within Pf6N2E2_4159 at 4841.778 kb on + strand at 4841.787 kb on + strand at 4841.787 kb on + strand at 4841.788 kb on - strand at 4841.788 kb on - strand at 4841.809 kb on - strand at 4841.809 kb on - strand at 4841.809 kb on - strand at 4841.809 kb on - strand at 4841.852 kb on - strand, within Pf6N2E2_4160 at 4841.936 kb on + strand at 4842.031 kb on + strand at 4842.032 kb on - strand at 4842.032 kb on - strand at 4842.032 kb on - strand at 4842.032 kb on - strand at 4842.032 kb on - strand at 4842.032 kb on - strand at 4842.032 kb on - strand at 4842.053 kb on + strand at 4842.053 kb on + strand at 4842.054 kb on - strand at 4842.068 kb on - strand at 4842.093 kb on + strand at 4842.094 kb on - strand at 4842.148 kb on + strand at 4842.149 kb on - strand at 4842.189 kb on + strand at 4842.189 kb on + strand at 4842.190 kb on - strand at 4842.190 kb on - strand at 4842.190 kb on - strand at 4842.225 kb on + strand at 4842.225 kb on + strand at 4842.226 kb on - strand at 4842.226 kb on - strand at 4842.226 kb on - strand at 4842.226 kb on - strand at 4842.226 kb on - strand at 4842.226 kb on - strand at 4842.227 kb on + strand at 4842.227 kb on + strand at 4842.228 kb on - strand at 4842.228 kb on - strand at 4842.229 kb on + strand at 4842.229 kb on + strand at 4842.229 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,840,969 - +0.1 4,840,969 - -1.8 4,840,969 - -0.4 4,841,008 - +0.5 4,841,008 - +0.8 4,841,008 - +0.8 4,841,037 + -0.5 4,841,038 - -0.9 4,841,038 - -0.7 4,841,133 + +0.8 4,841,133 + -0.3 4,841,133 + +0.1 4,841,133 + -0.1 4,841,133 + +0.5 4,841,133 + +1.1 4,841,133 + +1.1 4,841,133 + -0.4 4,841,133 + -1.1 4,841,133 + +1.4 4,841,133 + -0.9 4,841,133 + -0.5 4,841,134 - +0.3 4,841,134 - -1.2 4,841,134 - +0.7 4,841,134 - +1.1 4,841,134 - -0.2 4,841,134 - -2.1 4,841,134 - -0.2 4,841,134 - -0.1 4,841,134 - +1.1 4,841,134 - +0.7 4,841,134 - -1.0 4,841,181 + +2.5 4,841,182 - +0.0 4,841,304 - Pf6N2E2_4159 0.23 +1.6 4,841,304 - Pf6N2E2_4159 0.23 -0.1 4,841,304 - Pf6N2E2_4159 0.23 +1.1 4,841,307 + Pf6N2E2_4159 0.24 +2.6 4,841,307 + Pf6N2E2_4159 0.24 +1.3 4,841,308 - Pf6N2E2_4159 0.24 +0.8 4,841,491 - Pf6N2E2_4159 0.54 +2.7 4,841,644 + Pf6N2E2_4159 0.79 +2.2 4,841,645 - Pf6N2E2_4159 0.79 +0.6 4,841,778 + +1.9 4,841,787 + +1.2 4,841,787 + +2.8 4,841,788 - +1.4 4,841,788 - +0.8 4,841,809 - +0.0 4,841,809 - -0.1 4,841,809 - -0.4 4,841,809 - -1.0 4,841,852 - Pf6N2E2_4160 0.27 -0.7 4,841,936 + +2.1 4,842,031 + +1.2 4,842,032 - +0.5 4,842,032 - +0.5 4,842,032 - +0.5 4,842,032 - -0.1 4,842,032 - -0.4 4,842,032 - +0.9 4,842,032 - +0.2 4,842,053 + +2.4 4,842,053 + +1.7 4,842,054 - +1.0 4,842,068 - -1.1 4,842,093 + +0.9 4,842,094 - +0.2 4,842,148 + +0.9 4,842,149 - +1.3 4,842,189 + +2.6 4,842,189 + +1.9 4,842,190 - +0.1 4,842,190 - -1.2 4,842,190 - -1.1 4,842,225 + -0.1 4,842,225 + +0.5 4,842,226 - +1.5 4,842,226 - -0.8 4,842,226 - -0.2 4,842,226 - +1.2 4,842,226 - +0.5 4,842,226 - +0.3 4,842,227 + +0.9 4,842,227 + +0.9 4,842,228 - +1.7 4,842,228 - -0.8 4,842,229 + +1.5 4,842,229 + +0.1 4,842,229 + +0.4
Or see this region's nucleotide sequence