Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4160

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4158 and Pf6N2E2_4159 are separated by 198 nucleotidesPf6N2E2_4159 and Pf6N2E2_4160 are separated by 46 nucleotidesPf6N2E2_4160 and Pf6N2E2_4161 are separated by 365 nucleotides Pf6N2E2_4158 - Periplasmic thiol:disulfide interchange protein DsbA, at 4,840,322 to 4,840,963 _4158 Pf6N2E2_4159 - Cytochrome c4, at 4,841,162 to 4,841,773 _4159 Pf6N2E2_4160 - Cytochrome c5, at 4,841,820 to 4,841,936 _4160 Pf6N2E2_4161 - GTP-binding protein EngB, at 4,842,302 to 4,842,943 _4161 Position (kb) 4841 4842Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4840.969 kb on - strandat 4840.969 kb on - strandat 4840.969 kb on - strandat 4841.008 kb on - strandat 4841.008 kb on - strandat 4841.008 kb on - strandat 4841.037 kb on + strandat 4841.038 kb on - strandat 4841.038 kb on - strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.181 kb on + strandat 4841.182 kb on - strandat 4841.304 kb on - strand, within Pf6N2E2_4159at 4841.304 kb on - strand, within Pf6N2E2_4159at 4841.304 kb on - strand, within Pf6N2E2_4159at 4841.307 kb on + strand, within Pf6N2E2_4159at 4841.307 kb on + strand, within Pf6N2E2_4159at 4841.308 kb on - strand, within Pf6N2E2_4159at 4841.491 kb on - strand, within Pf6N2E2_4159at 4841.644 kb on + strand, within Pf6N2E2_4159at 4841.645 kb on - strand, within Pf6N2E2_4159at 4841.778 kb on + strandat 4841.787 kb on + strandat 4841.787 kb on + strandat 4841.788 kb on - strandat 4841.788 kb on - strandat 4841.809 kb on - strandat 4841.809 kb on - strandat 4841.809 kb on - strandat 4841.809 kb on - strandat 4841.852 kb on - strand, within Pf6N2E2_4160at 4841.936 kb on + strandat 4842.031 kb on + strandat 4842.032 kb on - strandat 4842.032 kb on - strandat 4842.032 kb on - strandat 4842.032 kb on - strandat 4842.032 kb on - strandat 4842.032 kb on - strandat 4842.032 kb on - strandat 4842.053 kb on + strandat 4842.053 kb on + strandat 4842.054 kb on - strandat 4842.068 kb on - strandat 4842.093 kb on + strandat 4842.094 kb on - strandat 4842.148 kb on + strandat 4842.149 kb on - strandat 4842.189 kb on + strandat 4842.189 kb on + strandat 4842.190 kb on - strandat 4842.190 kb on - strandat 4842.190 kb on - strandat 4842.225 kb on + strandat 4842.225 kb on + strandat 4842.226 kb on - strandat 4842.226 kb on - strandat 4842.226 kb on - strandat 4842.226 kb on - strandat 4842.226 kb on - strandat 4842.226 kb on - strandat 4842.227 kb on + strandat 4842.227 kb on + strandat 4842.228 kb on - strandat 4842.228 kb on - strandat 4842.229 kb on + strandat 4842.229 kb on + strandat 4842.229 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,840,969 - +0.1
4,840,969 - -1.8
4,840,969 - -0.4
4,841,008 - +0.5
4,841,008 - +0.8
4,841,008 - +0.8
4,841,037 + -0.5
4,841,038 - -0.9
4,841,038 - -0.7
4,841,133 + +0.8
4,841,133 + -0.3
4,841,133 + +0.1
4,841,133 + -0.1
4,841,133 + +0.5
4,841,133 + +1.1
4,841,133 + +1.1
4,841,133 + -0.4
4,841,133 + -1.1
4,841,133 + +1.4
4,841,133 + -0.9
4,841,133 + -0.5
4,841,134 - +0.3
4,841,134 - -1.2
4,841,134 - +0.7
4,841,134 - +1.1
4,841,134 - -0.2
4,841,134 - -2.1
4,841,134 - -0.2
4,841,134 - -0.1
4,841,134 - +1.1
4,841,134 - +0.7
4,841,134 - -1.0
4,841,181 + +2.5
4,841,182 - +0.0
4,841,304 - Pf6N2E2_4159 0.23 +1.6
4,841,304 - Pf6N2E2_4159 0.23 -0.1
4,841,304 - Pf6N2E2_4159 0.23 +1.1
4,841,307 + Pf6N2E2_4159 0.24 +2.6
4,841,307 + Pf6N2E2_4159 0.24 +1.3
4,841,308 - Pf6N2E2_4159 0.24 +0.8
4,841,491 - Pf6N2E2_4159 0.54 +2.7
4,841,644 + Pf6N2E2_4159 0.79 +2.2
4,841,645 - Pf6N2E2_4159 0.79 +0.6
4,841,778 + +1.9
4,841,787 + +1.2
4,841,787 + +2.8
4,841,788 - +1.4
4,841,788 - +0.8
4,841,809 - +0.0
4,841,809 - -0.1
4,841,809 - -0.4
4,841,809 - -1.0
4,841,852 - Pf6N2E2_4160 0.27 -0.7
4,841,936 + +2.1
4,842,031 + +1.2
4,842,032 - +0.5
4,842,032 - +0.5
4,842,032 - +0.5
4,842,032 - -0.1
4,842,032 - -0.4
4,842,032 - +0.9
4,842,032 - +0.2
4,842,053 + +2.4
4,842,053 + +1.7
4,842,054 - +1.0
4,842,068 - -1.1
4,842,093 + +0.9
4,842,094 - +0.2
4,842,148 + +0.9
4,842,149 - +1.3
4,842,189 + +2.6
4,842,189 + +1.9
4,842,190 - +0.1
4,842,190 - -1.2
4,842,190 - -1.1
4,842,225 + -0.1
4,842,225 + +0.5
4,842,226 - +1.5
4,842,226 - -0.8
4,842,226 - -0.2
4,842,226 - +1.2
4,842,226 - +0.5
4,842,226 - +0.3
4,842,227 + +0.9
4,842,227 + +0.9
4,842,228 - +1.7
4,842,228 - -0.8
4,842,229 + +1.5
4,842,229 + +0.1
4,842,229 + +0.4

Or see this region's nucleotide sequence