Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4083

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4081 and Pf6N2E2_4082 are separated by 12 nucleotidesPf6N2E2_4082 and Pf6N2E2_4083 are separated by 9 nucleotidesPf6N2E2_4083 and Pf6N2E2_4084 are separated by 385 nucleotides Pf6N2E2_4081 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 4,757,896 to 4,758,981 _4081 Pf6N2E2_4082 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 4,758,994 to 4,759,416 _4082 Pf6N2E2_4083 - hypothetical protein, at 4,759,426 to 4,759,626 _4083 Pf6N2E2_4084 - Transcriptional regulator, at 4,760,012 to 4,760,929 _4084 Position (kb) 4759 4760Strain fitness (log2 ratio) -1 0 1 2at 4759.566 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.673 kb on + strandat 4759.674 kb on - strandat 4759.905 kb on + strandat 4759.905 kb on + strandat 4759.905 kb on + strandat 4760.256 kb on + strand, within Pf6N2E2_4084at 4760.257 kb on - strandat 4760.257 kb on - strand, within Pf6N2E2_4084at 4760.332 kb on - strand, within Pf6N2E2_4084at 4760.481 kb on + strand, within Pf6N2E2_4084at 4760.481 kb on + strand, within Pf6N2E2_4084at 4760.482 kb on - strand, within Pf6N2E2_4084at 4760.482 kb on - strand, within Pf6N2E2_4084at 4760.482 kb on - strand, within Pf6N2E2_4084

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,759,566 - Pf6N2E2_4083 0.70 -1.1
4,759,606 - Pf6N2E2_4083 0.90 +2.3
4,759,606 - Pf6N2E2_4083 0.90 -1.1
4,759,606 - Pf6N2E2_4083 0.90 -1.1
4,759,606 - Pf6N2E2_4083 0.90 -0.8
4,759,606 - Pf6N2E2_4083 0.90 -0.1
4,759,673 + +1.4
4,759,674 - +0.1
4,759,905 + +1.3
4,759,905 + -0.7
4,759,905 + -0.1
4,760,256 + Pf6N2E2_4084 0.27 +1.1
4,760,257 - +1.9
4,760,257 - Pf6N2E2_4084 0.27 +0.5
4,760,332 - Pf6N2E2_4084 0.35 -0.3
4,760,481 + Pf6N2E2_4084 0.51 -0.7
4,760,481 + Pf6N2E2_4084 0.51 +0.3
4,760,482 - Pf6N2E2_4084 0.51 +0.6
4,760,482 - Pf6N2E2_4084 0.51 +1.1
4,760,482 - Pf6N2E2_4084 0.51 +0.1

Or see this region's nucleotide sequence