Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4071 and Pf6N2E2_4072 are separated by 112 nucleotides Pf6N2E2_4072 and Pf6N2E2_4073 are separated by 93 nucleotides
Pf6N2E2_4071 - Phosphate transport system regulatory protein PhoU, at 4,746,617 to 4,747,378
_4071
Pf6N2E2_4072 - Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1), at 4,747,491 to 4,748,324
_4072
Pf6N2E2_4073 - Phosphate transport system permease protein PstA (TC 3.A.1.7.1), at 4,748,418 to 4,750,088
_4073
Position (kb)
4747
4748
4749 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4746.491 kb on + strand at 4746.492 kb on - strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.618 kb on + strand at 4746.619 kb on - strand at 4746.619 kb on - strand at 4746.619 kb on - strand at 4746.619 kb on - strand at 4746.619 kb on - strand at 4746.619 kb on - strand at 4746.619 kb on - strand at 4746.622 kb on + strand at 4746.646 kb on + strand at 4746.646 kb on + strand at 4746.647 kb on - strand at 4746.729 kb on + strand, within Pf6N2E2_4071 at 4746.729 kb on + strand, within Pf6N2E2_4071 at 4746.729 kb on + strand, within Pf6N2E2_4071 at 4746.729 kb on + strand, within Pf6N2E2_4071 at 4746.730 kb on - strand, within Pf6N2E2_4071 at 4746.730 kb on - strand, within Pf6N2E2_4071 at 4746.730 kb on - strand, within Pf6N2E2_4071 at 4746.730 kb on - strand, within Pf6N2E2_4071 at 4747.412 kb on + strand at 4747.412 kb on + strand at 4747.445 kb on - strand at 4747.456 kb on - strand at 4747.456 kb on - strand at 4747.588 kb on + strand, within Pf6N2E2_4072 at 4747.588 kb on + strand, within Pf6N2E2_4072 at 4747.589 kb on - strand, within Pf6N2E2_4072 at 4747.589 kb on - strand, within Pf6N2E2_4072 at 4747.589 kb on - strand, within Pf6N2E2_4072 at 4747.589 kb on - strand, within Pf6N2E2_4072 at 4747.589 kb on - strand, within Pf6N2E2_4072 at 4747.675 kb on + strand, within Pf6N2E2_4072 at 4747.675 kb on + strand, within Pf6N2E2_4072 at 4747.676 kb on - strand, within Pf6N2E2_4072 at 4747.676 kb on - strand, within Pf6N2E2_4072 at 4747.927 kb on + strand, within Pf6N2E2_4072 at 4747.927 kb on + strand, within Pf6N2E2_4072 at 4748.185 kb on + strand, within Pf6N2E2_4072 at 4748.206 kb on + strand, within Pf6N2E2_4072 at 4748.206 kb on + strand, within Pf6N2E2_4072 at 4748.207 kb on - strand, within Pf6N2E2_4072 at 4748.306 kb on + strand at 4748.307 kb on - strand at 4748.307 kb on - strand at 4748.307 kb on - strand at 4748.342 kb on - strand at 4748.342 kb on - strand at 4748.355 kb on + strand at 4748.355 kb on + strand at 4748.356 kb on - strand at 4748.392 kb on - strand at 4748.392 kb on - strand at 4748.392 kb on - strand at 4748.392 kb on - strand at 4748.392 kb on - strand at 4748.419 kb on + strand at 4748.419 kb on + strand at 4748.419 kb on + strand at 4748.420 kb on - strand at 4748.420 kb on - strand at 4748.420 kb on - strand at 4748.423 kb on + strand at 4748.423 kb on + strand at 4748.424 kb on - strand at 4748.437 kb on + strand at 4748.438 kb on - strand at 4748.438 kb on - strand at 4748.438 kb on - strand at 4748.438 kb on - strand at 4748.522 kb on - strand at 4748.522 kb on - strand at 4748.572 kb on + strand at 4748.572 kb on + strand at 4748.572 kb on + strand at 4748.572 kb on + strand at 4748.572 kb on + strand at 4748.573 kb on - strand at 4748.573 kb on - strand at 4748.573 kb on - strand at 4748.573 kb on - strand at 4748.573 kb on - strand at 4748.573 kb on - strand at 4748.573 kb on - strand at 4748.573 kb on - strand at 4748.573 kb on - strand at 4748.573 kb on - strand at 4748.577 kb on - strand at 4748.577 kb on - strand at 4748.577 kb on - strand at 4748.577 kb on - strand at 4748.577 kb on - strand at 4748.577 kb on - strand at 4748.618 kb on - strand, within Pf6N2E2_4073 at 4748.618 kb on - strand, within Pf6N2E2_4073 at 4748.624 kb on - strand, within Pf6N2E2_4073 at 4748.624 kb on - strand, within Pf6N2E2_4073 at 4748.667 kb on + strand, within Pf6N2E2_4073 at 4748.668 kb on - strand, within Pf6N2E2_4073 at 4748.977 kb on + strand, within Pf6N2E2_4073 at 4748.978 kb on - strand, within Pf6N2E2_4073 at 4748.978 kb on - strand, within Pf6N2E2_4073 at 4748.978 kb on - strand, within Pf6N2E2_4073 at 4749.008 kb on - strand, within Pf6N2E2_4073 at 4749.008 kb on - strand, within Pf6N2E2_4073 at 4749.095 kb on - strand, within Pf6N2E2_4073 at 4749.241 kb on + strand, within Pf6N2E2_4073 at 4749.242 kb on - strand, within Pf6N2E2_4073 at 4749.242 kb on - strand, within Pf6N2E2_4073 at 4749.283 kb on + strand, within Pf6N2E2_4073
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,746,491 + +0.1 4,746,492 - +0.1 4,746,618 + -0.5 4,746,618 + -0.4 4,746,618 + +0.8 4,746,618 + -1.1 4,746,618 + +0.5 4,746,618 + +1.1 4,746,618 + -0.1 4,746,618 + -0.5 4,746,618 + +1.9 4,746,618 + -0.7 4,746,618 + +0.4 4,746,618 + -0.7 4,746,618 + +0.0 4,746,619 - -1.3 4,746,619 - -1.4 4,746,619 - -0.3 4,746,619 - -0.6 4,746,619 - -1.9 4,746,619 - +0.7 4,746,619 - -0.6 4,746,622 + +0.3 4,746,646 + -0.1 4,746,646 + +0.5 4,746,647 - +0.2 4,746,729 + Pf6N2E2_4071 0.15 -0.1 4,746,729 + Pf6N2E2_4071 0.15 -0.9 4,746,729 + Pf6N2E2_4071 0.15 +0.3 4,746,729 + Pf6N2E2_4071 0.15 +1.7 4,746,730 - Pf6N2E2_4071 0.15 -3.0 4,746,730 - Pf6N2E2_4071 0.15 -1.2 4,746,730 - Pf6N2E2_4071 0.15 -0.5 4,746,730 - Pf6N2E2_4071 0.15 -1.3 4,747,412 + -0.9 4,747,412 + -1.0 4,747,445 - +0.3 4,747,456 - +0.1 4,747,456 - +0.8 4,747,588 + Pf6N2E2_4072 0.12 -0.8 4,747,588 + Pf6N2E2_4072 0.12 -0.1 4,747,589 - Pf6N2E2_4072 0.12 -1.0 4,747,589 - Pf6N2E2_4072 0.12 +0.1 4,747,589 - Pf6N2E2_4072 0.12 -0.9 4,747,589 - Pf6N2E2_4072 0.12 -1.6 4,747,589 - Pf6N2E2_4072 0.12 +0.1 4,747,675 + Pf6N2E2_4072 0.22 -0.1 4,747,675 + Pf6N2E2_4072 0.22 -0.7 4,747,676 - Pf6N2E2_4072 0.22 +2.6 4,747,676 - Pf6N2E2_4072 0.22 +0.3 4,747,927 + Pf6N2E2_4072 0.52 -2.5 4,747,927 + Pf6N2E2_4072 0.52 +2.3 4,748,185 + Pf6N2E2_4072 0.83 -0.4 4,748,206 + Pf6N2E2_4072 0.86 +0.3 4,748,206 + Pf6N2E2_4072 0.86 -0.0 4,748,207 - Pf6N2E2_4072 0.86 -0.5 4,748,306 + +0.7 4,748,307 - -0.5 4,748,307 - -0.2 4,748,307 - -0.6 4,748,342 - +0.4 4,748,342 - -0.8 4,748,355 + +1.2 4,748,355 + -0.8 4,748,356 - +0.6 4,748,392 - +0.7 4,748,392 - +0.5 4,748,392 - +0.2 4,748,392 - +0.2 4,748,392 - +0.2 4,748,419 + -0.1 4,748,419 + -0.1 4,748,419 + -0.6 4,748,420 - +0.2 4,748,420 - +0.6 4,748,420 - -1.6 4,748,423 + +0.6 4,748,423 + +0.2 4,748,424 - -0.1 4,748,437 + -0.0 4,748,438 - +1.2 4,748,438 - +1.5 4,748,438 - -0.0 4,748,438 - +1.3 4,748,522 - +1.4 4,748,522 - +1.4 4,748,572 + -0.3 4,748,572 + -1.3 4,748,572 + +2.1 4,748,572 + -1.1 4,748,572 + -0.6 4,748,573 - -0.4 4,748,573 - +0.2 4,748,573 - +0.2 4,748,573 - +2.3 4,748,573 - -0.3 4,748,573 - -0.1 4,748,573 - -0.6 4,748,573 - -0.1 4,748,573 - +0.4 4,748,573 - +1.0 4,748,577 - -0.1 4,748,577 - +0.9 4,748,577 - +1.5 4,748,577 - +0.9 4,748,577 - +0.7 4,748,577 - +0.8 4,748,618 - Pf6N2E2_4073 0.12 -0.1 4,748,618 - Pf6N2E2_4073 0.12 +0.3 4,748,624 - Pf6N2E2_4073 0.12 +0.0 4,748,624 - Pf6N2E2_4073 0.12 +1.7 4,748,667 + Pf6N2E2_4073 0.15 -0.4 4,748,668 - Pf6N2E2_4073 0.15 -0.3 4,748,977 + Pf6N2E2_4073 0.33 -0.3 4,748,978 - Pf6N2E2_4073 0.34 -1.8 4,748,978 - Pf6N2E2_4073 0.34 +1.4 4,748,978 - Pf6N2E2_4073 0.34 +0.9 4,749,008 - Pf6N2E2_4073 0.35 +0.9 4,749,008 - Pf6N2E2_4073 0.35 -0.4 4,749,095 - Pf6N2E2_4073 0.41 +1.6 4,749,241 + Pf6N2E2_4073 0.49 +0.8 4,749,242 - Pf6N2E2_4073 0.49 -0.3 4,749,242 - Pf6N2E2_4073 0.49 -0.5 4,749,283 + Pf6N2E2_4073 0.52 +0.4
Or see this region's nucleotide sequence