Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4072

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4071 and Pf6N2E2_4072 are separated by 112 nucleotidesPf6N2E2_4072 and Pf6N2E2_4073 are separated by 93 nucleotides Pf6N2E2_4071 - Phosphate transport system regulatory protein PhoU, at 4,746,617 to 4,747,378 _4071 Pf6N2E2_4072 - Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1), at 4,747,491 to 4,748,324 _4072 Pf6N2E2_4073 - Phosphate transport system permease protein PstA (TC 3.A.1.7.1), at 4,748,418 to 4,750,088 _4073 Position (kb) 4747 4748 4749Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4746.491 kb on + strandat 4746.492 kb on - strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.622 kb on + strandat 4746.646 kb on + strandat 4746.646 kb on + strandat 4746.647 kb on - strandat 4746.729 kb on + strand, within Pf6N2E2_4071at 4746.729 kb on + strand, within Pf6N2E2_4071at 4746.729 kb on + strand, within Pf6N2E2_4071at 4746.729 kb on + strand, within Pf6N2E2_4071at 4746.730 kb on - strand, within Pf6N2E2_4071at 4746.730 kb on - strand, within Pf6N2E2_4071at 4746.730 kb on - strand, within Pf6N2E2_4071at 4746.730 kb on - strand, within Pf6N2E2_4071at 4747.412 kb on + strandat 4747.412 kb on + strandat 4747.445 kb on - strandat 4747.456 kb on - strandat 4747.456 kb on - strandat 4747.588 kb on + strand, within Pf6N2E2_4072at 4747.588 kb on + strand, within Pf6N2E2_4072at 4747.589 kb on - strand, within Pf6N2E2_4072at 4747.589 kb on - strand, within Pf6N2E2_4072at 4747.589 kb on - strand, within Pf6N2E2_4072at 4747.589 kb on - strand, within Pf6N2E2_4072at 4747.589 kb on - strand, within Pf6N2E2_4072at 4747.675 kb on + strand, within Pf6N2E2_4072at 4747.675 kb on + strand, within Pf6N2E2_4072at 4747.676 kb on - strand, within Pf6N2E2_4072at 4747.676 kb on - strand, within Pf6N2E2_4072at 4747.927 kb on + strand, within Pf6N2E2_4072at 4747.927 kb on + strand, within Pf6N2E2_4072at 4748.185 kb on + strand, within Pf6N2E2_4072at 4748.206 kb on + strand, within Pf6N2E2_4072at 4748.206 kb on + strand, within Pf6N2E2_4072at 4748.207 kb on - strand, within Pf6N2E2_4072at 4748.306 kb on + strandat 4748.307 kb on - strandat 4748.307 kb on - strandat 4748.307 kb on - strandat 4748.342 kb on - strandat 4748.342 kb on - strandat 4748.355 kb on + strandat 4748.355 kb on + strandat 4748.356 kb on - strandat 4748.392 kb on - strandat 4748.392 kb on - strandat 4748.392 kb on - strandat 4748.392 kb on - strandat 4748.392 kb on - strandat 4748.419 kb on + strandat 4748.419 kb on + strandat 4748.419 kb on + strandat 4748.420 kb on - strandat 4748.420 kb on - strandat 4748.420 kb on - strandat 4748.423 kb on + strandat 4748.423 kb on + strandat 4748.424 kb on - strandat 4748.437 kb on + strandat 4748.438 kb on - strandat 4748.438 kb on - strandat 4748.438 kb on - strandat 4748.438 kb on - strandat 4748.522 kb on - strandat 4748.522 kb on - strandat 4748.572 kb on + strandat 4748.572 kb on + strandat 4748.572 kb on + strandat 4748.572 kb on + strandat 4748.572 kb on + strandat 4748.573 kb on - strandat 4748.573 kb on - strandat 4748.573 kb on - strandat 4748.573 kb on - strandat 4748.573 kb on - strandat 4748.573 kb on - strandat 4748.573 kb on - strandat 4748.573 kb on - strandat 4748.573 kb on - strandat 4748.573 kb on - strandat 4748.577 kb on - strandat 4748.577 kb on - strandat 4748.577 kb on - strandat 4748.577 kb on - strandat 4748.577 kb on - strandat 4748.577 kb on - strandat 4748.618 kb on - strand, within Pf6N2E2_4073at 4748.618 kb on - strand, within Pf6N2E2_4073at 4748.624 kb on - strand, within Pf6N2E2_4073at 4748.624 kb on - strand, within Pf6N2E2_4073at 4748.667 kb on + strand, within Pf6N2E2_4073at 4748.668 kb on - strand, within Pf6N2E2_4073at 4748.977 kb on + strand, within Pf6N2E2_4073at 4748.978 kb on - strand, within Pf6N2E2_4073at 4748.978 kb on - strand, within Pf6N2E2_4073at 4748.978 kb on - strand, within Pf6N2E2_4073at 4749.008 kb on - strand, within Pf6N2E2_4073at 4749.008 kb on - strand, within Pf6N2E2_4073at 4749.095 kb on - strand, within Pf6N2E2_4073at 4749.241 kb on + strand, within Pf6N2E2_4073at 4749.242 kb on - strand, within Pf6N2E2_4073at 4749.242 kb on - strand, within Pf6N2E2_4073at 4749.283 kb on + strand, within Pf6N2E2_4073

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,746,491 + +0.1
4,746,492 - +0.1
4,746,618 + -0.5
4,746,618 + -0.4
4,746,618 + +0.8
4,746,618 + -1.1
4,746,618 + +0.5
4,746,618 + +1.1
4,746,618 + -0.1
4,746,618 + -0.5
4,746,618 + +1.9
4,746,618 + -0.7
4,746,618 + +0.4
4,746,618 + -0.7
4,746,618 + +0.0
4,746,619 - -1.3
4,746,619 - -1.4
4,746,619 - -0.3
4,746,619 - -0.6
4,746,619 - -1.9
4,746,619 - +0.7
4,746,619 - -0.6
4,746,622 + +0.3
4,746,646 + -0.1
4,746,646 + +0.5
4,746,647 - +0.2
4,746,729 + Pf6N2E2_4071 0.15 -0.1
4,746,729 + Pf6N2E2_4071 0.15 -0.9
4,746,729 + Pf6N2E2_4071 0.15 +0.3
4,746,729 + Pf6N2E2_4071 0.15 +1.7
4,746,730 - Pf6N2E2_4071 0.15 -3.0
4,746,730 - Pf6N2E2_4071 0.15 -1.2
4,746,730 - Pf6N2E2_4071 0.15 -0.5
4,746,730 - Pf6N2E2_4071 0.15 -1.3
4,747,412 + -0.9
4,747,412 + -1.0
4,747,445 - +0.3
4,747,456 - +0.1
4,747,456 - +0.8
4,747,588 + Pf6N2E2_4072 0.12 -0.8
4,747,588 + Pf6N2E2_4072 0.12 -0.1
4,747,589 - Pf6N2E2_4072 0.12 -1.0
4,747,589 - Pf6N2E2_4072 0.12 +0.1
4,747,589 - Pf6N2E2_4072 0.12 -0.9
4,747,589 - Pf6N2E2_4072 0.12 -1.6
4,747,589 - Pf6N2E2_4072 0.12 +0.1
4,747,675 + Pf6N2E2_4072 0.22 -0.1
4,747,675 + Pf6N2E2_4072 0.22 -0.7
4,747,676 - Pf6N2E2_4072 0.22 +2.6
4,747,676 - Pf6N2E2_4072 0.22 +0.3
4,747,927 + Pf6N2E2_4072 0.52 -2.5
4,747,927 + Pf6N2E2_4072 0.52 +2.3
4,748,185 + Pf6N2E2_4072 0.83 -0.4
4,748,206 + Pf6N2E2_4072 0.86 +0.3
4,748,206 + Pf6N2E2_4072 0.86 -0.0
4,748,207 - Pf6N2E2_4072 0.86 -0.5
4,748,306 + +0.7
4,748,307 - -0.5
4,748,307 - -0.2
4,748,307 - -0.6
4,748,342 - +0.4
4,748,342 - -0.8
4,748,355 + +1.2
4,748,355 + -0.8
4,748,356 - +0.6
4,748,392 - +0.7
4,748,392 - +0.5
4,748,392 - +0.2
4,748,392 - +0.2
4,748,392 - +0.2
4,748,419 + -0.1
4,748,419 + -0.1
4,748,419 + -0.6
4,748,420 - +0.2
4,748,420 - +0.6
4,748,420 - -1.6
4,748,423 + +0.6
4,748,423 + +0.2
4,748,424 - -0.1
4,748,437 + -0.0
4,748,438 - +1.2
4,748,438 - +1.5
4,748,438 - -0.0
4,748,438 - +1.3
4,748,522 - +1.4
4,748,522 - +1.4
4,748,572 + -0.3
4,748,572 + -1.3
4,748,572 + +2.1
4,748,572 + -1.1
4,748,572 + -0.6
4,748,573 - -0.4
4,748,573 - +0.2
4,748,573 - +0.2
4,748,573 - +2.3
4,748,573 - -0.3
4,748,573 - -0.1
4,748,573 - -0.6
4,748,573 - -0.1
4,748,573 - +0.4
4,748,573 - +1.0
4,748,577 - -0.1
4,748,577 - +0.9
4,748,577 - +1.5
4,748,577 - +0.9
4,748,577 - +0.7
4,748,577 - +0.8
4,748,618 - Pf6N2E2_4073 0.12 -0.1
4,748,618 - Pf6N2E2_4073 0.12 +0.3
4,748,624 - Pf6N2E2_4073 0.12 +0.0
4,748,624 - Pf6N2E2_4073 0.12 +1.7
4,748,667 + Pf6N2E2_4073 0.15 -0.4
4,748,668 - Pf6N2E2_4073 0.15 -0.3
4,748,977 + Pf6N2E2_4073 0.33 -0.3
4,748,978 - Pf6N2E2_4073 0.34 -1.8
4,748,978 - Pf6N2E2_4073 0.34 +1.4
4,748,978 - Pf6N2E2_4073 0.34 +0.9
4,749,008 - Pf6N2E2_4073 0.35 +0.9
4,749,008 - Pf6N2E2_4073 0.35 -0.4
4,749,095 - Pf6N2E2_4073 0.41 +1.6
4,749,241 + Pf6N2E2_4073 0.49 +0.8
4,749,242 - Pf6N2E2_4073 0.49 -0.3
4,749,242 - Pf6N2E2_4073 0.49 -0.5
4,749,283 + Pf6N2E2_4073 0.52 +0.4

Or see this region's nucleotide sequence