Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4008 and Pf6N2E2_4009 are separated by 235 nucleotides Pf6N2E2_4009 and Pf6N2E2_4010 are separated by 146 nucleotides
Pf6N2E2_4008 - hypothetical protein, at 4,677,921 to 4,678,304
_4008
Pf6N2E2_4009 - GGDEF domain protein, at 4,678,540 to 4,680,447
_4009
Pf6N2E2_4010 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 4,680,594 to 4,681,778
_4010
Position (kb)
4678
4679
4680
4681 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4677.649 kb on + strand at 4677.649 kb on + strand at 4677.649 kb on + strand at 4677.649 kb on + strand at 4677.649 kb on + strand at 4677.649 kb on + strand at 4677.650 kb on - strand at 4677.650 kb on - strand at 4677.650 kb on - strand at 4677.660 kb on + strand at 4677.660 kb on + strand at 4677.660 kb on + strand at 4677.660 kb on + strand at 4677.661 kb on - strand at 4677.672 kb on + strand at 4677.672 kb on + strand at 4677.673 kb on - strand at 4677.739 kb on + strand at 4677.740 kb on - strand at 4677.740 kb on - strand at 4677.751 kb on + strand at 4677.777 kb on - strand at 4677.791 kb on + strand at 4677.854 kb on + strand at 4677.854 kb on + strand at 4677.854 kb on + strand at 4677.854 kb on + strand at 4677.854 kb on + strand at 4677.854 kb on + strand at 4677.854 kb on + strand at 4677.855 kb on - strand at 4677.855 kb on - strand at 4677.855 kb on - strand at 4677.855 kb on - strand at 4677.855 kb on - strand at 4677.855 kb on - strand at 4677.855 kb on - strand at 4677.855 kb on - strand at 4677.855 kb on - strand at 4677.858 kb on + strand at 4677.858 kb on + strand at 4677.858 kb on + strand at 4677.858 kb on + strand at 4677.859 kb on - strand at 4677.859 kb on - strand at 4677.859 kb on - strand at 4677.859 kb on - strand at 4677.859 kb on - strand at 4677.859 kb on - strand at 4677.859 kb on - strand at 4677.859 kb on - strand at 4677.859 kb on - strand at 4677.911 kb on + strand at 4677.912 kb on - strand at 4677.912 kb on - strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.915 kb on + strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.916 kb on - strand at 4677.920 kb on + strand at 4677.920 kb on + strand at 4677.920 kb on + strand at 4677.921 kb on - strand at 4677.921 kb on - strand at 4677.921 kb on - strand at 4677.921 kb on - strand at 4677.921 kb on - strand at 4677.921 kb on - strand at 4677.921 kb on - strand at 4677.921 kb on - strand at 4678.023 kb on + strand, within Pf6N2E2_4008 at 4678.023 kb on + strand, within Pf6N2E2_4008 at 4678.023 kb on + strand, within Pf6N2E2_4008 at 4678.026 kb on + strand, within Pf6N2E2_4008 at 4678.026 kb on + strand, within Pf6N2E2_4008 at 4678.026 kb on + strand, within Pf6N2E2_4008 at 4678.027 kb on - strand, within Pf6N2E2_4008 at 4678.027 kb on - strand, within Pf6N2E2_4008 at 4678.027 kb on - strand, within Pf6N2E2_4008 at 4678.027 kb on - strand, within Pf6N2E2_4008 at 4678.097 kb on - strand, within Pf6N2E2_4008 at 4678.097 kb on - strand, within Pf6N2E2_4008 at 4678.097 kb on - strand, within Pf6N2E2_4008 at 4678.097 kb on - strand, within Pf6N2E2_4008 at 4678.507 kb on + strand at 4678.507 kb on + strand at 4678.508 kb on - strand at 4678.508 kb on - strand at 4678.508 kb on - strand at 4678.508 kb on - strand at 4678.511 kb on + strand at 4678.512 kb on - strand at 4678.512 kb on - strand at 4678.512 kb on - strand at 4678.512 kb on - strand at 4678.512 kb on - strand at 4678.512 kb on - strand at 4678.695 kb on + strand at 4678.696 kb on - strand at 4678.804 kb on - strand, within Pf6N2E2_4009 at 4678.991 kb on + strand, within Pf6N2E2_4009 at 4678.991 kb on + strand, within Pf6N2E2_4009 at 4678.991 kb on + strand, within Pf6N2E2_4009 at 4678.991 kb on + strand, within Pf6N2E2_4009 at 4678.991 kb on + strand, within Pf6N2E2_4009 at 4678.991 kb on + strand, within Pf6N2E2_4009 at 4678.991 kb on + strand, within Pf6N2E2_4009 at 4678.991 kb on + strand, within Pf6N2E2_4009 at 4678.991 kb on + strand, within Pf6N2E2_4009 at 4678.992 kb on - strand, within Pf6N2E2_4009 at 4678.992 kb on - strand, within Pf6N2E2_4009 at 4678.992 kb on - strand, within Pf6N2E2_4009 at 4678.992 kb on - strand, within Pf6N2E2_4009 at 4678.992 kb on - strand, within Pf6N2E2_4009 at 4679.023 kb on + strand, within Pf6N2E2_4009 at 4679.023 kb on + strand, within Pf6N2E2_4009 at 4679.023 kb on + strand, within Pf6N2E2_4009 at 4679.131 kb on - strand, within Pf6N2E2_4009 at 4679.131 kb on - strand, within Pf6N2E2_4009 at 4679.342 kb on + strand, within Pf6N2E2_4009 at 4679.342 kb on + strand, within Pf6N2E2_4009 at 4679.343 kb on - strand, within Pf6N2E2_4009 at 4679.512 kb on + strand, within Pf6N2E2_4009 at 4679.512 kb on + strand, within Pf6N2E2_4009 at 4679.513 kb on - strand, within Pf6N2E2_4009 at 4679.513 kb on - strand, within Pf6N2E2_4009 at 4679.513 kb on - strand, within Pf6N2E2_4009 at 4679.831 kb on + strand, within Pf6N2E2_4009 at 4679.831 kb on + strand, within Pf6N2E2_4009 at 4679.831 kb on + strand, within Pf6N2E2_4009 at 4679.889 kb on - strand, within Pf6N2E2_4009 at 4679.889 kb on - strand, within Pf6N2E2_4009 at 4679.889 kb on - strand, within Pf6N2E2_4009 at 4680.012 kb on + strand, within Pf6N2E2_4009 at 4680.012 kb on + strand, within Pf6N2E2_4009 at 4680.013 kb on - strand, within Pf6N2E2_4009 at 4680.013 kb on - strand, within Pf6N2E2_4009 at 4680.013 kb on - strand, within Pf6N2E2_4009 at 4680.026 kb on + strand, within Pf6N2E2_4009 at 4680.026 kb on + strand, within Pf6N2E2_4009 at 4680.361 kb on + strand at 4680.361 kb on + strand at 4680.404 kb on + strand at 4680.404 kb on + strand at 4680.405 kb on - strand at 4680.405 kb on - strand at 4680.405 kb on - strand at 4680.405 kb on - strand at 4680.405 kb on - strand at 4680.437 kb on + strand at 4680.437 kb on + strand at 4680.438 kb on - strand at 4680.438 kb on - strand at 4680.438 kb on - strand at 4680.483 kb on - strand at 4680.484 kb on + strand at 4680.484 kb on + strand at 4680.484 kb on + strand at 4680.484 kb on + strand at 4680.484 kb on + strand at 4680.484 kb on + strand at 4680.485 kb on - strand at 4680.485 kb on - strand at 4680.485 kb on - strand at 4680.485 kb on - strand at 4680.510 kb on + strand at 4680.510 kb on + strand at 4680.510 kb on + strand at 4680.510 kb on + strand at 4680.510 kb on + strand at 4680.511 kb on - strand at 4680.532 kb on + strand at 4680.532 kb on + strand at 4680.532 kb on + strand at 4680.532 kb on + strand at 4680.533 kb on - strand at 4680.533 kb on - strand at 4680.533 kb on - strand at 4680.551 kb on - strand at 4680.568 kb on + strand at 4680.568 kb on + strand at 4680.587 kb on - strand at 4680.593 kb on + strand at 4680.593 kb on + strand at 4680.593 kb on + strand at 4680.593 kb on + strand at 4680.593 kb on + strand at 4680.594 kb on - strand at 4680.594 kb on - strand at 4680.594 kb on - strand at 4680.594 kb on - strand at 4680.594 kb on - strand at 4680.594 kb on - strand at 4680.594 kb on - strand at 4680.594 kb on - strand at 4680.594 kb on - strand at 4680.600 kb on + strand at 4680.600 kb on + strand at 4680.601 kb on - strand at 4680.687 kb on + strand at 4680.687 kb on + strand at 4680.688 kb on - strand at 4680.688 kb on - strand at 4680.688 kb on - strand at 4680.901 kb on - strand, within Pf6N2E2_4010 at 4680.940 kb on - strand, within Pf6N2E2_4010 at 4680.981 kb on + strand, within Pf6N2E2_4010 at 4680.982 kb on - strand, within Pf6N2E2_4010 at 4680.982 kb on - strand, within Pf6N2E2_4010 at 4680.982 kb on - strand, within Pf6N2E2_4010 at 4681.059 kb on - strand, within Pf6N2E2_4010 at 4681.059 kb on - strand, within Pf6N2E2_4010 at 4681.059 kb on - strand, within Pf6N2E2_4010 at 4681.059 kb on - strand, within Pf6N2E2_4010 at 4681.228 kb on - strand, within Pf6N2E2_4010
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,677,649 + +1.3 4,677,649 + -1.8 4,677,649 + -0.6 4,677,649 + +0.2 4,677,649 + -1.0 4,677,649 + -0.4 4,677,650 - -1.5 4,677,650 - +0.6 4,677,650 - +0.5 4,677,660 + +0.5 4,677,660 + +0.7 4,677,660 + +0.5 4,677,660 + +0.4 4,677,661 - -0.2 4,677,672 + +0.4 4,677,672 + -0.4 4,677,673 - +0.8 4,677,739 + -0.1 4,677,740 - -0.7 4,677,740 - -0.5 4,677,751 + +0.7 4,677,777 - -0.7 4,677,791 + -0.1 4,677,854 + +2.5 4,677,854 + +1.2 4,677,854 + -0.1 4,677,854 + -0.2 4,677,854 + +0.7 4,677,854 + -1.4 4,677,854 + +0.7 4,677,855 - +0.2 4,677,855 - -1.2 4,677,855 - -0.2 4,677,855 - +0.1 4,677,855 - +1.6 4,677,855 - +0.5 4,677,855 - +0.5 4,677,855 - +1.6 4,677,855 - +2.9 4,677,858 + +0.2 4,677,858 + +0.9 4,677,858 + +1.7 4,677,858 + +1.3 4,677,859 - +0.3 4,677,859 - +1.0 4,677,859 - +0.5 4,677,859 - +0.3 4,677,859 - +1.1 4,677,859 - +0.6 4,677,859 - -0.7 4,677,859 - -1.5 4,677,859 - +0.6 4,677,911 + -0.1 4,677,912 - +0.8 4,677,912 - +0.3 4,677,915 + -1.1 4,677,915 + -0.4 4,677,915 + +1.6 4,677,915 + +0.2 4,677,915 + +0.9 4,677,915 + +0.2 4,677,915 + +0.3 4,677,915 + -0.5 4,677,915 + +0.1 4,677,915 + +1.0 4,677,915 + +0.3 4,677,915 + +0.9 4,677,916 - +0.2 4,677,916 - -1.0 4,677,916 - +0.0 4,677,916 - -1.4 4,677,916 - +0.1 4,677,916 - +0.1 4,677,916 - +0.3 4,677,916 - -0.0 4,677,916 - +1.1 4,677,916 - -0.2 4,677,916 - +1.0 4,677,916 - +0.7 4,677,916 - +0.7 4,677,916 - +0.5 4,677,916 - +0.8 4,677,916 - -1.7 4,677,916 - +1.5 4,677,916 - +1.0 4,677,916 - +0.1 4,677,916 - +1.3 4,677,920 + +0.5 4,677,920 + +0.6 4,677,920 + -0.4 4,677,921 - +0.9 4,677,921 - +0.2 4,677,921 - -0.9 4,677,921 - +1.1 4,677,921 - -1.1 4,677,921 - -1.1 4,677,921 - +0.5 4,677,921 - +0.6 4,678,023 + Pf6N2E2_4008 0.27 +1.3 4,678,023 + Pf6N2E2_4008 0.27 -0.1 4,678,023 + Pf6N2E2_4008 0.27 +0.9 4,678,026 + Pf6N2E2_4008 0.27 -0.5 4,678,026 + Pf6N2E2_4008 0.27 +1.6 4,678,026 + Pf6N2E2_4008 0.27 +0.1 4,678,027 - Pf6N2E2_4008 0.28 +1.3 4,678,027 - Pf6N2E2_4008 0.28 +0.4 4,678,027 - Pf6N2E2_4008 0.28 +0.5 4,678,027 - Pf6N2E2_4008 0.28 +0.7 4,678,097 - Pf6N2E2_4008 0.46 -0.4 4,678,097 - Pf6N2E2_4008 0.46 +0.0 4,678,097 - Pf6N2E2_4008 0.46 +0.1 4,678,097 - Pf6N2E2_4008 0.46 -0.1 4,678,507 + +1.1 4,678,507 + +0.2 4,678,508 - -1.3 4,678,508 - -0.1 4,678,508 - -1.8 4,678,508 - +0.3 4,678,511 + -1.5 4,678,512 - -0.3 4,678,512 - -0.3 4,678,512 - -0.0 4,678,512 - +0.3 4,678,512 - -0.6 4,678,512 - +1.2 4,678,695 + -1.5 4,678,696 - -1.9 4,678,804 - Pf6N2E2_4009 0.14 -2.0 4,678,991 + Pf6N2E2_4009 0.24 -2.4 4,678,991 + Pf6N2E2_4009 0.24 +0.9 4,678,991 + Pf6N2E2_4009 0.24 -1.0 4,678,991 + Pf6N2E2_4009 0.24 +0.6 4,678,991 + Pf6N2E2_4009 0.24 -0.8 4,678,991 + Pf6N2E2_4009 0.24 -1.2 4,678,991 + Pf6N2E2_4009 0.24 -1.8 4,678,991 + Pf6N2E2_4009 0.24 -2.9 4,678,991 + Pf6N2E2_4009 0.24 -2.0 4,678,992 - Pf6N2E2_4009 0.24 -2.0 4,678,992 - Pf6N2E2_4009 0.24 -1.5 4,678,992 - Pf6N2E2_4009 0.24 -2.3 4,678,992 - Pf6N2E2_4009 0.24 -0.5 4,678,992 - Pf6N2E2_4009 0.24 -0.8 4,679,023 + Pf6N2E2_4009 0.25 -1.7 4,679,023 + Pf6N2E2_4009 0.25 -1.5 4,679,023 + Pf6N2E2_4009 0.25 -1.4 4,679,131 - Pf6N2E2_4009 0.31 -2.0 4,679,131 - Pf6N2E2_4009 0.31 -1.0 4,679,342 + Pf6N2E2_4009 0.42 -1.0 4,679,342 + Pf6N2E2_4009 0.42 -3.1 4,679,343 - Pf6N2E2_4009 0.42 +0.0 4,679,512 + Pf6N2E2_4009 0.51 -1.5 4,679,512 + Pf6N2E2_4009 0.51 -1.1 4,679,513 - Pf6N2E2_4009 0.51 -2.2 4,679,513 - Pf6N2E2_4009 0.51 -1.0 4,679,513 - Pf6N2E2_4009 0.51 -1.6 4,679,831 + Pf6N2E2_4009 0.68 -1.1 4,679,831 + Pf6N2E2_4009 0.68 -1.2 4,679,831 + Pf6N2E2_4009 0.68 +0.0 4,679,889 - Pf6N2E2_4009 0.71 -1.5 4,679,889 - Pf6N2E2_4009 0.71 +1.1 4,679,889 - Pf6N2E2_4009 0.71 -0.6 4,680,012 + Pf6N2E2_4009 0.77 -1.8 4,680,012 + Pf6N2E2_4009 0.77 -1.5 4,680,013 - Pf6N2E2_4009 0.77 -1.8 4,680,013 - Pf6N2E2_4009 0.77 -1.1 4,680,013 - Pf6N2E2_4009 0.77 -2.0 4,680,026 + Pf6N2E2_4009 0.78 +0.3 4,680,026 + Pf6N2E2_4009 0.78 -2.2 4,680,361 + +2.9 4,680,361 + -1.0 4,680,404 + +1.0 4,680,404 + -0.9 4,680,405 - +2.9 4,680,405 - -2.0 4,680,405 - -1.6 4,680,405 - -0.3 4,680,405 - +0.2 4,680,437 + -1.5 4,680,437 + +0.7 4,680,438 - -0.4 4,680,438 - -0.5 4,680,438 - +0.0 4,680,483 - +0.5 4,680,484 + -0.8 4,680,484 + -0.3 4,680,484 + -0.1 4,680,484 + -1.0 4,680,484 + -2.6 4,680,484 + +1.3 4,680,485 - -0.5 4,680,485 - +0.9 4,680,485 - -0.6 4,680,485 - -1.4 4,680,510 + -0.7 4,680,510 + -1.2 4,680,510 + -0.4 4,680,510 + +0.3 4,680,510 + -0.2 4,680,511 - -0.1 4,680,532 + +0.8 4,680,532 + -2.3 4,680,532 + -0.1 4,680,532 + -0.0 4,680,533 - +0.3 4,680,533 - +0.6 4,680,533 - -1.3 4,680,551 - +0.9 4,680,568 + +0.4 4,680,568 + +0.4 4,680,587 - +0.6 4,680,593 + +1.0 4,680,593 + +0.7 4,680,593 + -0.2 4,680,593 + -0.4 4,680,593 + -0.5 4,680,594 - +0.6 4,680,594 - +0.9 4,680,594 - +0.4 4,680,594 - +0.6 4,680,594 - -0.4 4,680,594 - -0.8 4,680,594 - -0.2 4,680,594 - +1.1 4,680,594 - -1.3 4,680,600 + -1.1 4,680,600 + +0.9 4,680,601 - +0.5 4,680,687 + -0.2 4,680,687 + -0.1 4,680,688 - +1.4 4,680,688 - -0.8 4,680,688 - +0.0 4,680,901 - Pf6N2E2_4010 0.26 -0.4 4,680,940 - Pf6N2E2_4010 0.29 -0.1 4,680,981 + Pf6N2E2_4010 0.33 +0.4 4,680,982 - Pf6N2E2_4010 0.33 +0.2 4,680,982 - Pf6N2E2_4010 0.33 -0.6 4,680,982 - Pf6N2E2_4010 0.33 -0.5 4,681,059 - Pf6N2E2_4010 0.39 +0.3 4,681,059 - Pf6N2E2_4010 0.39 -1.7 4,681,059 - Pf6N2E2_4010 0.39 +0.3 4,681,059 - Pf6N2E2_4010 0.39 -0.9 4,681,228 - Pf6N2E2_4010 0.54 -0.4
Or see this region's nucleotide sequence