Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3930 and Pf6N2E2_3931 are separated by 112 nucleotides Pf6N2E2_3931 and Pf6N2E2_3932 are separated by 80 nucleotides Pf6N2E2_3932 and Pf6N2E2_3933 are separated by 182 nucleotides
Pf6N2E2_3930 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 4,567,017 to 4,567,595
_3930
Pf6N2E2_3931 - ATPases of the AAA+ class, at 4,567,708 to 4,568,154
_3931
Pf6N2E2_3932 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 4,568,235 to 4,569,464
_3932
Pf6N2E2_3933 - D-2-hydroxyglutarate dehydrogenase, at 4,569,647 to 4,571,065
_3933
Position (kb)
4568
4569
4570 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4567.308 kb on + strand, within Pf6N2E2_3930 at 4567.308 kb on + strand, within Pf6N2E2_3930 at 4567.308 kb on + strand, within Pf6N2E2_3930 at 4567.308 kb on + strand, within Pf6N2E2_3930 at 4567.308 kb on + strand, within Pf6N2E2_3930 at 4567.308 kb on + strand, within Pf6N2E2_3930 at 4567.308 kb on + strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.309 kb on - strand, within Pf6N2E2_3930 at 4567.330 kb on + strand, within Pf6N2E2_3930 at 4567.330 kb on + strand, within Pf6N2E2_3930 at 4567.330 kb on + strand, within Pf6N2E2_3930 at 4567.331 kb on - strand, within Pf6N2E2_3930 at 4567.331 kb on - strand, within Pf6N2E2_3930 at 4567.331 kb on - strand, within Pf6N2E2_3930 at 4567.392 kb on + strand, within Pf6N2E2_3930 at 4567.392 kb on + strand, within Pf6N2E2_3930 at 4567.392 kb on + strand, within Pf6N2E2_3930 at 4567.393 kb on - strand, within Pf6N2E2_3930 at 4567.393 kb on - strand, within Pf6N2E2_3930 at 4567.563 kb on + strand at 4567.609 kb on + strand at 4567.609 kb on + strand at 4567.609 kb on + strand at 4567.609 kb on + strand at 4567.609 kb on + strand at 4567.609 kb on + strand at 4567.609 kb on + strand at 4567.609 kb on + strand at 4567.609 kb on + strand at 4567.609 kb on + strand at 4567.610 kb on - strand at 4567.610 kb on - strand at 4567.610 kb on - strand at 4567.610 kb on - strand at 4567.610 kb on - strand at 4567.613 kb on + strand at 4567.613 kb on + strand at 4567.613 kb on + strand at 4567.613 kb on + strand at 4567.613 kb on + strand at 4567.614 kb on - strand at 4567.614 kb on - strand at 4567.614 kb on - strand at 4567.615 kb on + strand at 4567.615 kb on + strand at 4567.616 kb on - strand at 4567.616 kb on - strand at 4567.616 kb on - strand at 4567.647 kb on + strand at 4567.740 kb on + strand at 4567.740 kb on + strand at 4567.741 kb on - strand at 4567.777 kb on - strand, within Pf6N2E2_3931 at 4567.826 kb on + strand, within Pf6N2E2_3931 at 4567.827 kb on - strand, within Pf6N2E2_3931 at 4567.827 kb on - strand, within Pf6N2E2_3931 at 4567.827 kb on - strand, within Pf6N2E2_3931 at 4567.827 kb on - strand, within Pf6N2E2_3931 at 4567.827 kb on - strand, within Pf6N2E2_3931 at 4567.827 kb on - strand, within Pf6N2E2_3931 at 4567.827 kb on - strand, within Pf6N2E2_3931 at 4567.827 kb on - strand, within Pf6N2E2_3931 at 4568.067 kb on + strand, within Pf6N2E2_3931 at 4568.067 kb on + strand, within Pf6N2E2_3931 at 4568.067 kb on + strand, within Pf6N2E2_3931 at 4568.067 kb on + strand, within Pf6N2E2_3931 at 4568.067 kb on + strand, within Pf6N2E2_3931 at 4568.067 kb on + strand, within Pf6N2E2_3931 at 4568.067 kb on + strand, within Pf6N2E2_3931 at 4568.067 kb on + strand, within Pf6N2E2_3931 at 4568.068 kb on - strand, within Pf6N2E2_3931 at 4568.100 kb on + strand, within Pf6N2E2_3931 at 4568.100 kb on + strand, within Pf6N2E2_3931 at 4568.100 kb on + strand, within Pf6N2E2_3931 at 4568.100 kb on + strand, within Pf6N2E2_3931 at 4568.101 kb on - strand, within Pf6N2E2_3931 at 4568.152 kb on + strand at 4568.152 kb on + strand at 4568.152 kb on + strand at 4568.153 kb on - strand at 4568.181 kb on - strand at 4568.199 kb on - strand at 4568.199 kb on - strand at 4568.236 kb on + strand at 4568.236 kb on + strand at 4568.236 kb on + strand at 4568.236 kb on + strand at 4568.236 kb on + strand at 4568.236 kb on + strand at 4568.237 kb on - strand at 4568.237 kb on - strand at 4568.237 kb on - strand at 4568.237 kb on - strand at 4568.237 kb on - strand at 4568.237 kb on - strand at 4568.237 kb on - strand at 4568.329 kb on + strand at 4568.329 kb on + strand at 4568.507 kb on + strand, within Pf6N2E2_3932 at 4568.507 kb on + strand, within Pf6N2E2_3932 at 4568.508 kb on - strand, within Pf6N2E2_3932 at 4568.521 kb on + strand, within Pf6N2E2_3932 at 4568.522 kb on - strand, within Pf6N2E2_3932 at 4568.522 kb on - strand, within Pf6N2E2_3932 at 4568.522 kb on - strand, within Pf6N2E2_3932 at 4568.926 kb on + strand, within Pf6N2E2_3932 at 4568.926 kb on + strand, within Pf6N2E2_3932 at 4568.927 kb on - strand, within Pf6N2E2_3932 at 4568.927 kb on - strand, within Pf6N2E2_3932 at 4569.149 kb on - strand, within Pf6N2E2_3932 at 4569.355 kb on + strand at 4569.355 kb on + strand at 4569.356 kb on - strand at 4569.356 kb on - strand at 4569.356 kb on - strand at 4569.356 kb on - strand at 4569.356 kb on - strand at 4569.356 kb on - strand at 4569.371 kb on - strand at 4569.371 kb on - strand at 4569.444 kb on - strand at 4569.520 kb on - strand at 4569.568 kb on - strand at 4569.583 kb on + strand at 4569.583 kb on + strand at 4569.588 kb on + strand at 4569.589 kb on - strand at 4569.589 kb on - strand at 4569.589 kb on - strand at 4569.589 kb on - strand at 4569.589 kb on - strand at 4569.593 kb on + strand at 4569.593 kb on + strand at 4569.593 kb on + strand at 4569.593 kb on + strand at 4569.593 kb on + strand at 4569.593 kb on + strand at 4569.593 kb on + strand at 4569.594 kb on - strand at 4569.594 kb on - strand at 4569.594 kb on - strand at 4569.594 kb on - strand at 4569.594 kb on - strand at 4569.594 kb on - strand at 4569.594 kb on - strand at 4569.690 kb on + strand at 4569.690 kb on + strand at 4569.690 kb on + strand at 4569.690 kb on + strand at 4569.691 kb on - strand at 4569.691 kb on - strand at 4569.691 kb on - strand at 4569.691 kb on - strand at 4569.691 kb on - strand at 4569.890 kb on - strand, within Pf6N2E2_3933 at 4569.947 kb on + strand, within Pf6N2E2_3933 at 4569.947 kb on + strand, within Pf6N2E2_3933 at 4569.947 kb on + strand, within Pf6N2E2_3933 at 4569.948 kb on - strand, within Pf6N2E2_3933 at 4569.948 kb on - strand, within Pf6N2E2_3933 at 4569.948 kb on - strand, within Pf6N2E2_3933 at 4569.948 kb on - strand, within Pf6N2E2_3933 at 4570.239 kb on - strand, within Pf6N2E2_3933 at 4570.239 kb on - strand, within Pf6N2E2_3933
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,567,308 + Pf6N2E2_3930 0.50 +0.8 4,567,308 + Pf6N2E2_3930 0.50 +0.8 4,567,308 + Pf6N2E2_3930 0.50 -0.5 4,567,308 + Pf6N2E2_3930 0.50 -0.7 4,567,308 + Pf6N2E2_3930 0.50 +1.3 4,567,308 + Pf6N2E2_3930 0.50 -1.2 4,567,308 + Pf6N2E2_3930 0.50 -0.6 4,567,309 - Pf6N2E2_3930 0.50 -0.8 4,567,309 - Pf6N2E2_3930 0.50 +0.9 4,567,309 - Pf6N2E2_3930 0.50 -0.8 4,567,309 - Pf6N2E2_3930 0.50 +0.5 4,567,309 - Pf6N2E2_3930 0.50 +0.6 4,567,309 - Pf6N2E2_3930 0.50 -0.1 4,567,309 - Pf6N2E2_3930 0.50 -0.4 4,567,309 - Pf6N2E2_3930 0.50 -0.6 4,567,309 - Pf6N2E2_3930 0.50 +0.4 4,567,309 - Pf6N2E2_3930 0.50 -0.3 4,567,309 - Pf6N2E2_3930 0.50 -0.2 4,567,309 - Pf6N2E2_3930 0.50 +1.8 4,567,309 - Pf6N2E2_3930 0.50 +1.2 4,567,330 + Pf6N2E2_3930 0.54 -0.7 4,567,330 + Pf6N2E2_3930 0.54 -0.1 4,567,330 + Pf6N2E2_3930 0.54 -0.3 4,567,331 - Pf6N2E2_3930 0.54 +0.2 4,567,331 - Pf6N2E2_3930 0.54 +0.2 4,567,331 - Pf6N2E2_3930 0.54 +0.0 4,567,392 + Pf6N2E2_3930 0.65 -0.3 4,567,392 + Pf6N2E2_3930 0.65 -0.4 4,567,392 + Pf6N2E2_3930 0.65 -0.4 4,567,393 - Pf6N2E2_3930 0.65 +0.0 4,567,393 - Pf6N2E2_3930 0.65 +0.7 4,567,563 + -0.8 4,567,609 + -0.1 4,567,609 + +1.2 4,567,609 + -0.2 4,567,609 + +0.5 4,567,609 + -1.2 4,567,609 + +1.3 4,567,609 + +0.8 4,567,609 + +0.7 4,567,609 + +0.2 4,567,609 + -0.4 4,567,610 - +1.1 4,567,610 - +1.1 4,567,610 - +0.1 4,567,610 - -0.6 4,567,610 - +0.7 4,567,613 + -0.8 4,567,613 + -1.0 4,567,613 + -0.7 4,567,613 + -2.6 4,567,613 + -0.7 4,567,614 - -0.6 4,567,614 - -0.0 4,567,614 - -3.2 4,567,615 + -0.1 4,567,615 + +1.7 4,567,616 - +0.7 4,567,616 - -0.8 4,567,616 - -0.4 4,567,647 + -0.2 4,567,740 + +1.5 4,567,740 + +0.3 4,567,741 - -0.6 4,567,777 - Pf6N2E2_3931 0.15 +0.1 4,567,826 + Pf6N2E2_3931 0.26 -0.2 4,567,827 - Pf6N2E2_3931 0.27 -0.8 4,567,827 - Pf6N2E2_3931 0.27 +2.3 4,567,827 - Pf6N2E2_3931 0.27 +0.2 4,567,827 - Pf6N2E2_3931 0.27 -0.6 4,567,827 - Pf6N2E2_3931 0.27 +0.1 4,567,827 - Pf6N2E2_3931 0.27 +0.6 4,567,827 - Pf6N2E2_3931 0.27 -1.3 4,567,827 - Pf6N2E2_3931 0.27 -2.4 4,568,067 + Pf6N2E2_3931 0.80 +0.3 4,568,067 + Pf6N2E2_3931 0.80 -0.5 4,568,067 + Pf6N2E2_3931 0.80 +0.9 4,568,067 + Pf6N2E2_3931 0.80 -0.7 4,568,067 + Pf6N2E2_3931 0.80 +0.7 4,568,067 + Pf6N2E2_3931 0.80 -1.5 4,568,067 + Pf6N2E2_3931 0.80 -0.4 4,568,067 + Pf6N2E2_3931 0.80 -0.2 4,568,068 - Pf6N2E2_3931 0.81 +0.1 4,568,100 + Pf6N2E2_3931 0.88 -0.0 4,568,100 + Pf6N2E2_3931 0.88 -0.1 4,568,100 + Pf6N2E2_3931 0.88 -0.3 4,568,100 + Pf6N2E2_3931 0.88 -0.3 4,568,101 - Pf6N2E2_3931 0.88 -0.1 4,568,152 + +0.3 4,568,152 + -0.3 4,568,152 + -1.0 4,568,153 - -0.4 4,568,181 - +1.7 4,568,199 - +1.2 4,568,199 - -0.2 4,568,236 + -0.4 4,568,236 + +0.6 4,568,236 + +0.9 4,568,236 + +0.5 4,568,236 + +0.9 4,568,236 + -0.6 4,568,237 - -0.6 4,568,237 - +0.9 4,568,237 - -3.0 4,568,237 - +0.2 4,568,237 - -0.0 4,568,237 - +1.7 4,568,237 - +1.1 4,568,329 + -1.8 4,568,329 + -1.9 4,568,507 + Pf6N2E2_3932 0.22 -2.4 4,568,507 + Pf6N2E2_3932 0.22 -0.7 4,568,508 - Pf6N2E2_3932 0.22 +1.1 4,568,521 + Pf6N2E2_3932 0.23 -2.4 4,568,522 - Pf6N2E2_3932 0.23 -1.1 4,568,522 - Pf6N2E2_3932 0.23 -1.3 4,568,522 - Pf6N2E2_3932 0.23 -3.7 4,568,926 + Pf6N2E2_3932 0.56 -1.9 4,568,926 + Pf6N2E2_3932 0.56 -2.7 4,568,927 - Pf6N2E2_3932 0.56 -1.9 4,568,927 - Pf6N2E2_3932 0.56 -2.3 4,569,149 - Pf6N2E2_3932 0.74 -1.9 4,569,355 + +0.5 4,569,355 + -2.2 4,569,356 - -2.7 4,569,356 - -1.4 4,569,356 - -2.5 4,569,356 - -0.5 4,569,356 - -3.2 4,569,356 - -3.0 4,569,371 - -0.3 4,569,371 - +1.8 4,569,444 - -1.9 4,569,520 - -0.5 4,569,568 - +0.1 4,569,583 + +0.2 4,569,583 + -0.5 4,569,588 + -2.0 4,569,589 - +2.0 4,569,589 - +0.4 4,569,589 - +1.8 4,569,589 - +1.3 4,569,589 - -0.1 4,569,593 + +0.8 4,569,593 + +0.6 4,569,593 + +0.2 4,569,593 + -0.4 4,569,593 + -0.2 4,569,593 + +0.1 4,569,593 + +0.5 4,569,594 - -1.3 4,569,594 - -0.4 4,569,594 - -1.0 4,569,594 - +1.1 4,569,594 - +1.3 4,569,594 - +1.7 4,569,594 - -1.0 4,569,690 + -0.2 4,569,690 + +0.3 4,569,690 + -0.4 4,569,690 + -0.6 4,569,691 - +0.5 4,569,691 - -0.5 4,569,691 - +0.8 4,569,691 - -0.0 4,569,691 - +1.9 4,569,890 - Pf6N2E2_3933 0.17 -1.5 4,569,947 + Pf6N2E2_3933 0.21 +1.0 4,569,947 + Pf6N2E2_3933 0.21 +0.2 4,569,947 + Pf6N2E2_3933 0.21 +0.9 4,569,948 - Pf6N2E2_3933 0.21 -0.9 4,569,948 - Pf6N2E2_3933 0.21 +0.0 4,569,948 - Pf6N2E2_3933 0.21 -0.3 4,569,948 - Pf6N2E2_3933 0.21 -0.7 4,570,239 - Pf6N2E2_3933 0.42 -0.6 4,570,239 - Pf6N2E2_3933 0.42 +0.8
Or see this region's nucleotide sequence