Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3932

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3930 and Pf6N2E2_3931 are separated by 112 nucleotidesPf6N2E2_3931 and Pf6N2E2_3932 are separated by 80 nucleotidesPf6N2E2_3932 and Pf6N2E2_3933 are separated by 182 nucleotides Pf6N2E2_3930 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 4,567,017 to 4,567,595 _3930 Pf6N2E2_3931 - ATPases of the AAA+ class, at 4,567,708 to 4,568,154 _3931 Pf6N2E2_3932 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 4,568,235 to 4,569,464 _3932 Pf6N2E2_3933 - D-2-hydroxyglutarate dehydrogenase, at 4,569,647 to 4,571,065 _3933 Position (kb) 4568 4569 4570Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.330 kb on + strand, within Pf6N2E2_3930at 4567.330 kb on + strand, within Pf6N2E2_3930at 4567.330 kb on + strand, within Pf6N2E2_3930at 4567.331 kb on - strand, within Pf6N2E2_3930at 4567.331 kb on - strand, within Pf6N2E2_3930at 4567.331 kb on - strand, within Pf6N2E2_3930at 4567.392 kb on + strand, within Pf6N2E2_3930at 4567.392 kb on + strand, within Pf6N2E2_3930at 4567.392 kb on + strand, within Pf6N2E2_3930at 4567.393 kb on - strand, within Pf6N2E2_3930at 4567.393 kb on - strand, within Pf6N2E2_3930at 4567.563 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.610 kb on - strandat 4567.610 kb on - strandat 4567.610 kb on - strandat 4567.610 kb on - strandat 4567.610 kb on - strandat 4567.613 kb on + strandat 4567.613 kb on + strandat 4567.613 kb on + strandat 4567.613 kb on + strandat 4567.613 kb on + strandat 4567.614 kb on - strandat 4567.614 kb on - strandat 4567.614 kb on - strandat 4567.615 kb on + strandat 4567.615 kb on + strandat 4567.616 kb on - strandat 4567.616 kb on - strandat 4567.616 kb on - strandat 4567.647 kb on + strandat 4567.740 kb on + strandat 4567.740 kb on + strandat 4567.741 kb on - strandat 4567.777 kb on - strand, within Pf6N2E2_3931at 4567.826 kb on + strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.068 kb on - strand, within Pf6N2E2_3931at 4568.100 kb on + strand, within Pf6N2E2_3931at 4568.100 kb on + strand, within Pf6N2E2_3931at 4568.100 kb on + strand, within Pf6N2E2_3931at 4568.100 kb on + strand, within Pf6N2E2_3931at 4568.101 kb on - strand, within Pf6N2E2_3931at 4568.152 kb on + strandat 4568.152 kb on + strandat 4568.152 kb on + strandat 4568.153 kb on - strandat 4568.181 kb on - strandat 4568.199 kb on - strandat 4568.199 kb on - strandat 4568.236 kb on + strandat 4568.236 kb on + strandat 4568.236 kb on + strandat 4568.236 kb on + strandat 4568.236 kb on + strandat 4568.236 kb on + strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.329 kb on + strandat 4568.329 kb on + strandat 4568.507 kb on + strand, within Pf6N2E2_3932at 4568.507 kb on + strand, within Pf6N2E2_3932at 4568.508 kb on - strand, within Pf6N2E2_3932at 4568.521 kb on + strand, within Pf6N2E2_3932at 4568.522 kb on - strand, within Pf6N2E2_3932at 4568.522 kb on - strand, within Pf6N2E2_3932at 4568.522 kb on - strand, within Pf6N2E2_3932at 4568.926 kb on + strand, within Pf6N2E2_3932at 4568.926 kb on + strand, within Pf6N2E2_3932at 4568.927 kb on - strand, within Pf6N2E2_3932at 4568.927 kb on - strand, within Pf6N2E2_3932at 4569.149 kb on - strand, within Pf6N2E2_3932at 4569.355 kb on + strandat 4569.355 kb on + strandat 4569.356 kb on - strandat 4569.356 kb on - strandat 4569.356 kb on - strandat 4569.356 kb on - strandat 4569.356 kb on - strandat 4569.356 kb on - strandat 4569.371 kb on - strandat 4569.371 kb on - strandat 4569.444 kb on - strandat 4569.520 kb on - strandat 4569.568 kb on - strandat 4569.583 kb on + strandat 4569.583 kb on + strandat 4569.588 kb on + strandat 4569.589 kb on - strandat 4569.589 kb on - strandat 4569.589 kb on - strandat 4569.589 kb on - strandat 4569.589 kb on - strandat 4569.593 kb on + strandat 4569.593 kb on + strandat 4569.593 kb on + strandat 4569.593 kb on + strandat 4569.593 kb on + strandat 4569.593 kb on + strandat 4569.593 kb on + strandat 4569.594 kb on - strandat 4569.594 kb on - strandat 4569.594 kb on - strandat 4569.594 kb on - strandat 4569.594 kb on - strandat 4569.594 kb on - strandat 4569.594 kb on - strandat 4569.690 kb on + strandat 4569.690 kb on + strandat 4569.690 kb on + strandat 4569.690 kb on + strandat 4569.691 kb on - strandat 4569.691 kb on - strandat 4569.691 kb on - strandat 4569.691 kb on - strandat 4569.691 kb on - strandat 4569.890 kb on - strand, within Pf6N2E2_3933at 4569.947 kb on + strand, within Pf6N2E2_3933at 4569.947 kb on + strand, within Pf6N2E2_3933at 4569.947 kb on + strand, within Pf6N2E2_3933at 4569.948 kb on - strand, within Pf6N2E2_3933at 4569.948 kb on - strand, within Pf6N2E2_3933at 4569.948 kb on - strand, within Pf6N2E2_3933at 4569.948 kb on - strand, within Pf6N2E2_3933at 4570.239 kb on - strand, within Pf6N2E2_3933at 4570.239 kb on - strand, within Pf6N2E2_3933

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,567,308 + Pf6N2E2_3930 0.50 +0.8
4,567,308 + Pf6N2E2_3930 0.50 +0.8
4,567,308 + Pf6N2E2_3930 0.50 -0.5
4,567,308 + Pf6N2E2_3930 0.50 -0.7
4,567,308 + Pf6N2E2_3930 0.50 +1.3
4,567,308 + Pf6N2E2_3930 0.50 -1.2
4,567,308 + Pf6N2E2_3930 0.50 -0.6
4,567,309 - Pf6N2E2_3930 0.50 -0.8
4,567,309 - Pf6N2E2_3930 0.50 +0.9
4,567,309 - Pf6N2E2_3930 0.50 -0.8
4,567,309 - Pf6N2E2_3930 0.50 +0.5
4,567,309 - Pf6N2E2_3930 0.50 +0.6
4,567,309 - Pf6N2E2_3930 0.50 -0.1
4,567,309 - Pf6N2E2_3930 0.50 -0.4
4,567,309 - Pf6N2E2_3930 0.50 -0.6
4,567,309 - Pf6N2E2_3930 0.50 +0.4
4,567,309 - Pf6N2E2_3930 0.50 -0.3
4,567,309 - Pf6N2E2_3930 0.50 -0.2
4,567,309 - Pf6N2E2_3930 0.50 +1.8
4,567,309 - Pf6N2E2_3930 0.50 +1.2
4,567,330 + Pf6N2E2_3930 0.54 -0.7
4,567,330 + Pf6N2E2_3930 0.54 -0.1
4,567,330 + Pf6N2E2_3930 0.54 -0.3
4,567,331 - Pf6N2E2_3930 0.54 +0.2
4,567,331 - Pf6N2E2_3930 0.54 +0.2
4,567,331 - Pf6N2E2_3930 0.54 +0.0
4,567,392 + Pf6N2E2_3930 0.65 -0.3
4,567,392 + Pf6N2E2_3930 0.65 -0.4
4,567,392 + Pf6N2E2_3930 0.65 -0.4
4,567,393 - Pf6N2E2_3930 0.65 +0.0
4,567,393 - Pf6N2E2_3930 0.65 +0.7
4,567,563 + -0.8
4,567,609 + -0.1
4,567,609 + +1.2
4,567,609 + -0.2
4,567,609 + +0.5
4,567,609 + -1.2
4,567,609 + +1.3
4,567,609 + +0.8
4,567,609 + +0.7
4,567,609 + +0.2
4,567,609 + -0.4
4,567,610 - +1.1
4,567,610 - +1.1
4,567,610 - +0.1
4,567,610 - -0.6
4,567,610 - +0.7
4,567,613 + -0.8
4,567,613 + -1.0
4,567,613 + -0.7
4,567,613 + -2.6
4,567,613 + -0.7
4,567,614 - -0.6
4,567,614 - -0.0
4,567,614 - -3.2
4,567,615 + -0.1
4,567,615 + +1.7
4,567,616 - +0.7
4,567,616 - -0.8
4,567,616 - -0.4
4,567,647 + -0.2
4,567,740 + +1.5
4,567,740 + +0.3
4,567,741 - -0.6
4,567,777 - Pf6N2E2_3931 0.15 +0.1
4,567,826 + Pf6N2E2_3931 0.26 -0.2
4,567,827 - Pf6N2E2_3931 0.27 -0.8
4,567,827 - Pf6N2E2_3931 0.27 +2.3
4,567,827 - Pf6N2E2_3931 0.27 +0.2
4,567,827 - Pf6N2E2_3931 0.27 -0.6
4,567,827 - Pf6N2E2_3931 0.27 +0.1
4,567,827 - Pf6N2E2_3931 0.27 +0.6
4,567,827 - Pf6N2E2_3931 0.27 -1.3
4,567,827 - Pf6N2E2_3931 0.27 -2.4
4,568,067 + Pf6N2E2_3931 0.80 +0.3
4,568,067 + Pf6N2E2_3931 0.80 -0.5
4,568,067 + Pf6N2E2_3931 0.80 +0.9
4,568,067 + Pf6N2E2_3931 0.80 -0.7
4,568,067 + Pf6N2E2_3931 0.80 +0.7
4,568,067 + Pf6N2E2_3931 0.80 -1.5
4,568,067 + Pf6N2E2_3931 0.80 -0.4
4,568,067 + Pf6N2E2_3931 0.80 -0.2
4,568,068 - Pf6N2E2_3931 0.81 +0.1
4,568,100 + Pf6N2E2_3931 0.88 -0.0
4,568,100 + Pf6N2E2_3931 0.88 -0.1
4,568,100 + Pf6N2E2_3931 0.88 -0.3
4,568,100 + Pf6N2E2_3931 0.88 -0.3
4,568,101 - Pf6N2E2_3931 0.88 -0.1
4,568,152 + +0.3
4,568,152 + -0.3
4,568,152 + -1.0
4,568,153 - -0.4
4,568,181 - +1.7
4,568,199 - +1.2
4,568,199 - -0.2
4,568,236 + -0.4
4,568,236 + +0.6
4,568,236 + +0.9
4,568,236 + +0.5
4,568,236 + +0.9
4,568,236 + -0.6
4,568,237 - -0.6
4,568,237 - +0.9
4,568,237 - -3.0
4,568,237 - +0.2
4,568,237 - -0.0
4,568,237 - +1.7
4,568,237 - +1.1
4,568,329 + -1.8
4,568,329 + -1.9
4,568,507 + Pf6N2E2_3932 0.22 -2.4
4,568,507 + Pf6N2E2_3932 0.22 -0.7
4,568,508 - Pf6N2E2_3932 0.22 +1.1
4,568,521 + Pf6N2E2_3932 0.23 -2.4
4,568,522 - Pf6N2E2_3932 0.23 -1.1
4,568,522 - Pf6N2E2_3932 0.23 -1.3
4,568,522 - Pf6N2E2_3932 0.23 -3.7
4,568,926 + Pf6N2E2_3932 0.56 -1.9
4,568,926 + Pf6N2E2_3932 0.56 -2.7
4,568,927 - Pf6N2E2_3932 0.56 -1.9
4,568,927 - Pf6N2E2_3932 0.56 -2.3
4,569,149 - Pf6N2E2_3932 0.74 -1.9
4,569,355 + +0.5
4,569,355 + -2.2
4,569,356 - -2.7
4,569,356 - -1.4
4,569,356 - -2.5
4,569,356 - -0.5
4,569,356 - -3.2
4,569,356 - -3.0
4,569,371 - -0.3
4,569,371 - +1.8
4,569,444 - -1.9
4,569,520 - -0.5
4,569,568 - +0.1
4,569,583 + +0.2
4,569,583 + -0.5
4,569,588 + -2.0
4,569,589 - +2.0
4,569,589 - +0.4
4,569,589 - +1.8
4,569,589 - +1.3
4,569,589 - -0.1
4,569,593 + +0.8
4,569,593 + +0.6
4,569,593 + +0.2
4,569,593 + -0.4
4,569,593 + -0.2
4,569,593 + +0.1
4,569,593 + +0.5
4,569,594 - -1.3
4,569,594 - -0.4
4,569,594 - -1.0
4,569,594 - +1.1
4,569,594 - +1.3
4,569,594 - +1.7
4,569,594 - -1.0
4,569,690 + -0.2
4,569,690 + +0.3
4,569,690 + -0.4
4,569,690 + -0.6
4,569,691 - +0.5
4,569,691 - -0.5
4,569,691 - +0.8
4,569,691 - -0.0
4,569,691 - +1.9
4,569,890 - Pf6N2E2_3933 0.17 -1.5
4,569,947 + Pf6N2E2_3933 0.21 +1.0
4,569,947 + Pf6N2E2_3933 0.21 +0.2
4,569,947 + Pf6N2E2_3933 0.21 +0.9
4,569,948 - Pf6N2E2_3933 0.21 -0.9
4,569,948 - Pf6N2E2_3933 0.21 +0.0
4,569,948 - Pf6N2E2_3933 0.21 -0.3
4,569,948 - Pf6N2E2_3933 0.21 -0.7
4,570,239 - Pf6N2E2_3933 0.42 -0.6
4,570,239 - Pf6N2E2_3933 0.42 +0.8

Or see this region's nucleotide sequence