Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3834 and Pf6N2E2_3835 are separated by 32 nucleotides Pf6N2E2_3835 and Pf6N2E2_3836 are separated by 1 nucleotides Pf6N2E2_3836 and Pf6N2E2_3837 are separated by 78 nucleotides
Pf6N2E2_3834 - Lipoprotein NlpD, at 4,467,079 to 4,468,371
_3834
Pf6N2E2_3835 - Carboxyl-terminal protease (EC 3.4.21.102), at 4,468,404 to 4,469,720
_3835
Pf6N2E2_3836 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 4,469,722 to 4,470,501
_3836
Pf6N2E2_3837 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 4,470,580 to 4,471,326
_3837
Position (kb)
4468
4469
4470 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4467.440 kb on - strand, within Pf6N2E2_3834 at 4467.440 kb on - strand, within Pf6N2E2_3834 at 4467.496 kb on + strand, within Pf6N2E2_3834 at 4467.497 kb on - strand, within Pf6N2E2_3834 at 4467.497 kb on - strand, within Pf6N2E2_3834 at 4467.499 kb on + strand, within Pf6N2E2_3834 at 4467.499 kb on + strand, within Pf6N2E2_3834 at 4467.500 kb on - strand, within Pf6N2E2_3834 at 4467.500 kb on - strand, within Pf6N2E2_3834 at 4468.016 kb on + strand, within Pf6N2E2_3834 at 4468.016 kb on + strand, within Pf6N2E2_3834 at 4468.016 kb on + strand, within Pf6N2E2_3834 at 4468.016 kb on + strand, within Pf6N2E2_3834 at 4468.019 kb on + strand, within Pf6N2E2_3834 at 4468.020 kb on - strand, within Pf6N2E2_3834 at 4468.130 kb on + strand, within Pf6N2E2_3834 at 4468.131 kb on - strand, within Pf6N2E2_3834 at 4468.189 kb on + strand, within Pf6N2E2_3834 at 4468.190 kb on - strand, within Pf6N2E2_3834 at 4468.190 kb on - strand, within Pf6N2E2_3834 at 4468.293 kb on + strand at 4468.306 kb on + strand at 4468.306 kb on + strand at 4468.306 kb on + strand at 4468.369 kb on + strand at 4468.384 kb on + strand at 4468.384 kb on + strand at 4468.385 kb on - strand at 4468.385 kb on - strand at 4468.385 kb on - strand at 4468.590 kb on + strand, within Pf6N2E2_3835 at 4468.590 kb on + strand, within Pf6N2E2_3835 at 4468.591 kb on - strand, within Pf6N2E2_3835 at 4469.020 kb on - strand, within Pf6N2E2_3835 at 4469.205 kb on - strand, within Pf6N2E2_3835 at 4469.457 kb on + strand, within Pf6N2E2_3835 at 4469.457 kb on + strand, within Pf6N2E2_3835 at 4469.553 kb on + strand, within Pf6N2E2_3835 at 4469.553 kb on + strand, within Pf6N2E2_3835 at 4469.812 kb on + strand, within Pf6N2E2_3836 at 4469.812 kb on + strand, within Pf6N2E2_3836 at 4469.812 kb on + strand, within Pf6N2E2_3836 at 4469.812 kb on + strand, within Pf6N2E2_3836 at 4469.813 kb on - strand, within Pf6N2E2_3836 at 4469.868 kb on - strand, within Pf6N2E2_3836 at 4470.073 kb on + strand, within Pf6N2E2_3836 at 4470.074 kb on - strand, within Pf6N2E2_3836 at 4470.074 kb on - strand, within Pf6N2E2_3836 at 4470.075 kb on + strand, within Pf6N2E2_3836 at 4470.075 kb on + strand, within Pf6N2E2_3836 at 4470.076 kb on - strand, within Pf6N2E2_3836 at 4470.076 kb on - strand, within Pf6N2E2_3836 at 4470.076 kb on - strand, within Pf6N2E2_3836 at 4470.392 kb on + strand, within Pf6N2E2_3836 at 4470.392 kb on + strand, within Pf6N2E2_3836 at 4470.392 kb on + strand, within Pf6N2E2_3836 at 4470.392 kb on + strand, within Pf6N2E2_3836 at 4470.392 kb on + strand, within Pf6N2E2_3836 at 4470.393 kb on - strand, within Pf6N2E2_3836 at 4470.573 kb on - strand at 4470.581 kb on + strand at 4470.582 kb on - strand at 4470.692 kb on + strand, within Pf6N2E2_3837 at 4470.693 kb on - strand, within Pf6N2E2_3837 at 4470.693 kb on - strand, within Pf6N2E2_3837 at 4470.693 kb on - strand, within Pf6N2E2_3837
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,467,440 - Pf6N2E2_3834 0.28 -1.9 4,467,440 - Pf6N2E2_3834 0.28 -1.8 4,467,496 + Pf6N2E2_3834 0.32 +0.5 4,467,497 - Pf6N2E2_3834 0.32 -0.8 4,467,497 - Pf6N2E2_3834 0.32 -2.5 4,467,499 + Pf6N2E2_3834 0.32 -2.0 4,467,499 + Pf6N2E2_3834 0.32 -1.5 4,467,500 - Pf6N2E2_3834 0.33 -2.2 4,467,500 - Pf6N2E2_3834 0.33 -2.3 4,468,016 + Pf6N2E2_3834 0.72 +0.4 4,468,016 + Pf6N2E2_3834 0.72 -0.5 4,468,016 + Pf6N2E2_3834 0.72 -1.6 4,468,016 + Pf6N2E2_3834 0.72 +0.1 4,468,019 + Pf6N2E2_3834 0.73 -1.2 4,468,020 - Pf6N2E2_3834 0.73 -1.9 4,468,130 + Pf6N2E2_3834 0.81 +0.3 4,468,131 - Pf6N2E2_3834 0.81 -3.0 4,468,189 + Pf6N2E2_3834 0.86 -1.0 4,468,190 - Pf6N2E2_3834 0.86 -1.7 4,468,190 - Pf6N2E2_3834 0.86 -1.5 4,468,293 + +0.1 4,468,306 + +1.8 4,468,306 + -1.4 4,468,306 + +0.8 4,468,369 + +0.9 4,468,384 + +0.7 4,468,384 + +0.9 4,468,385 - -1.7 4,468,385 - -2.0 4,468,385 - -0.6 4,468,590 + Pf6N2E2_3835 0.14 -1.4 4,468,590 + Pf6N2E2_3835 0.14 +0.5 4,468,591 - Pf6N2E2_3835 0.14 -1.8 4,469,020 - Pf6N2E2_3835 0.47 -2.1 4,469,205 - Pf6N2E2_3835 0.61 +0.6 4,469,457 + Pf6N2E2_3835 0.80 -2.3 4,469,457 + Pf6N2E2_3835 0.80 -2.4 4,469,553 + Pf6N2E2_3835 0.87 -1.7 4,469,553 + Pf6N2E2_3835 0.87 -1.6 4,469,812 + Pf6N2E2_3836 0.12 -0.3 4,469,812 + Pf6N2E2_3836 0.12 +0.3 4,469,812 + Pf6N2E2_3836 0.12 -0.4 4,469,812 + Pf6N2E2_3836 0.12 +0.7 4,469,813 - Pf6N2E2_3836 0.12 +0.2 4,469,868 - Pf6N2E2_3836 0.19 -1.0 4,470,073 + Pf6N2E2_3836 0.45 +0.4 4,470,074 - Pf6N2E2_3836 0.45 -1.6 4,470,074 - Pf6N2E2_3836 0.45 -0.9 4,470,075 + Pf6N2E2_3836 0.45 -0.0 4,470,075 + Pf6N2E2_3836 0.45 +0.5 4,470,076 - Pf6N2E2_3836 0.45 -0.5 4,470,076 - Pf6N2E2_3836 0.45 -1.4 4,470,076 - Pf6N2E2_3836 0.45 -0.8 4,470,392 + Pf6N2E2_3836 0.86 -1.0 4,470,392 + Pf6N2E2_3836 0.86 +1.6 4,470,392 + Pf6N2E2_3836 0.86 -1.0 4,470,392 + Pf6N2E2_3836 0.86 -0.6 4,470,392 + Pf6N2E2_3836 0.86 -0.4 4,470,393 - Pf6N2E2_3836 0.86 -2.2 4,470,573 - +0.7 4,470,581 + +0.5 4,470,582 - +0.2 4,470,692 + Pf6N2E2_3837 0.15 +1.2 4,470,693 - Pf6N2E2_3837 0.15 +0.8 4,470,693 - Pf6N2E2_3837 0.15 +0.3 4,470,693 - Pf6N2E2_3837 0.15 -2.4
Or see this region's nucleotide sequence