Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3835

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3834 and Pf6N2E2_3835 are separated by 32 nucleotidesPf6N2E2_3835 and Pf6N2E2_3836 are separated by 1 nucleotidesPf6N2E2_3836 and Pf6N2E2_3837 are separated by 78 nucleotides Pf6N2E2_3834 - Lipoprotein NlpD, at 4,467,079 to 4,468,371 _3834 Pf6N2E2_3835 - Carboxyl-terminal protease (EC 3.4.21.102), at 4,468,404 to 4,469,720 _3835 Pf6N2E2_3836 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 4,469,722 to 4,470,501 _3836 Pf6N2E2_3837 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 4,470,580 to 4,471,326 _3837 Position (kb) 4468 4469 4470Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4467.440 kb on - strand, within Pf6N2E2_3834at 4467.440 kb on - strand, within Pf6N2E2_3834at 4467.496 kb on + strand, within Pf6N2E2_3834at 4467.497 kb on - strand, within Pf6N2E2_3834at 4467.497 kb on - strand, within Pf6N2E2_3834at 4467.499 kb on + strand, within Pf6N2E2_3834at 4467.499 kb on + strand, within Pf6N2E2_3834at 4467.500 kb on - strand, within Pf6N2E2_3834at 4467.500 kb on - strand, within Pf6N2E2_3834at 4468.016 kb on + strand, within Pf6N2E2_3834at 4468.016 kb on + strand, within Pf6N2E2_3834at 4468.016 kb on + strand, within Pf6N2E2_3834at 4468.016 kb on + strand, within Pf6N2E2_3834at 4468.019 kb on + strand, within Pf6N2E2_3834at 4468.020 kb on - strand, within Pf6N2E2_3834at 4468.130 kb on + strand, within Pf6N2E2_3834at 4468.131 kb on - strand, within Pf6N2E2_3834at 4468.189 kb on + strand, within Pf6N2E2_3834at 4468.190 kb on - strand, within Pf6N2E2_3834at 4468.190 kb on - strand, within Pf6N2E2_3834at 4468.293 kb on + strandat 4468.306 kb on + strandat 4468.306 kb on + strandat 4468.306 kb on + strandat 4468.369 kb on + strandat 4468.384 kb on + strandat 4468.384 kb on + strandat 4468.385 kb on - strandat 4468.385 kb on - strandat 4468.385 kb on - strandat 4468.590 kb on + strand, within Pf6N2E2_3835at 4468.590 kb on + strand, within Pf6N2E2_3835at 4468.591 kb on - strand, within Pf6N2E2_3835at 4469.020 kb on - strand, within Pf6N2E2_3835at 4469.205 kb on - strand, within Pf6N2E2_3835at 4469.457 kb on + strand, within Pf6N2E2_3835at 4469.457 kb on + strand, within Pf6N2E2_3835at 4469.553 kb on + strand, within Pf6N2E2_3835at 4469.553 kb on + strand, within Pf6N2E2_3835at 4469.812 kb on + strand, within Pf6N2E2_3836at 4469.812 kb on + strand, within Pf6N2E2_3836at 4469.812 kb on + strand, within Pf6N2E2_3836at 4469.812 kb on + strand, within Pf6N2E2_3836at 4469.813 kb on - strand, within Pf6N2E2_3836at 4469.868 kb on - strand, within Pf6N2E2_3836at 4470.073 kb on + strand, within Pf6N2E2_3836at 4470.074 kb on - strand, within Pf6N2E2_3836at 4470.074 kb on - strand, within Pf6N2E2_3836at 4470.075 kb on + strand, within Pf6N2E2_3836at 4470.075 kb on + strand, within Pf6N2E2_3836at 4470.076 kb on - strand, within Pf6N2E2_3836at 4470.076 kb on - strand, within Pf6N2E2_3836at 4470.076 kb on - strand, within Pf6N2E2_3836at 4470.392 kb on + strand, within Pf6N2E2_3836at 4470.392 kb on + strand, within Pf6N2E2_3836at 4470.392 kb on + strand, within Pf6N2E2_3836at 4470.392 kb on + strand, within Pf6N2E2_3836at 4470.392 kb on + strand, within Pf6N2E2_3836at 4470.393 kb on - strand, within Pf6N2E2_3836at 4470.573 kb on - strandat 4470.581 kb on + strandat 4470.582 kb on - strandat 4470.692 kb on + strand, within Pf6N2E2_3837at 4470.693 kb on - strand, within Pf6N2E2_3837at 4470.693 kb on - strand, within Pf6N2E2_3837at 4470.693 kb on - strand, within Pf6N2E2_3837

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
4,467,440 - Pf6N2E2_3834 0.28 -1.9
4,467,440 - Pf6N2E2_3834 0.28 -1.8
4,467,496 + Pf6N2E2_3834 0.32 +0.5
4,467,497 - Pf6N2E2_3834 0.32 -0.8
4,467,497 - Pf6N2E2_3834 0.32 -2.5
4,467,499 + Pf6N2E2_3834 0.32 -2.0
4,467,499 + Pf6N2E2_3834 0.32 -1.5
4,467,500 - Pf6N2E2_3834 0.33 -2.2
4,467,500 - Pf6N2E2_3834 0.33 -2.3
4,468,016 + Pf6N2E2_3834 0.72 +0.4
4,468,016 + Pf6N2E2_3834 0.72 -0.5
4,468,016 + Pf6N2E2_3834 0.72 -1.6
4,468,016 + Pf6N2E2_3834 0.72 +0.1
4,468,019 + Pf6N2E2_3834 0.73 -1.2
4,468,020 - Pf6N2E2_3834 0.73 -1.9
4,468,130 + Pf6N2E2_3834 0.81 +0.3
4,468,131 - Pf6N2E2_3834 0.81 -3.0
4,468,189 + Pf6N2E2_3834 0.86 -1.0
4,468,190 - Pf6N2E2_3834 0.86 -1.7
4,468,190 - Pf6N2E2_3834 0.86 -1.5
4,468,293 + +0.1
4,468,306 + +1.8
4,468,306 + -1.4
4,468,306 + +0.8
4,468,369 + +0.9
4,468,384 + +0.7
4,468,384 + +0.9
4,468,385 - -1.7
4,468,385 - -2.0
4,468,385 - -0.6
4,468,590 + Pf6N2E2_3835 0.14 -1.4
4,468,590 + Pf6N2E2_3835 0.14 +0.5
4,468,591 - Pf6N2E2_3835 0.14 -1.8
4,469,020 - Pf6N2E2_3835 0.47 -2.1
4,469,205 - Pf6N2E2_3835 0.61 +0.6
4,469,457 + Pf6N2E2_3835 0.80 -2.3
4,469,457 + Pf6N2E2_3835 0.80 -2.4
4,469,553 + Pf6N2E2_3835 0.87 -1.7
4,469,553 + Pf6N2E2_3835 0.87 -1.6
4,469,812 + Pf6N2E2_3836 0.12 -0.3
4,469,812 + Pf6N2E2_3836 0.12 +0.3
4,469,812 + Pf6N2E2_3836 0.12 -0.4
4,469,812 + Pf6N2E2_3836 0.12 +0.7
4,469,813 - Pf6N2E2_3836 0.12 +0.2
4,469,868 - Pf6N2E2_3836 0.19 -1.0
4,470,073 + Pf6N2E2_3836 0.45 +0.4
4,470,074 - Pf6N2E2_3836 0.45 -1.6
4,470,074 - Pf6N2E2_3836 0.45 -0.9
4,470,075 + Pf6N2E2_3836 0.45 -0.0
4,470,075 + Pf6N2E2_3836 0.45 +0.5
4,470,076 - Pf6N2E2_3836 0.45 -0.5
4,470,076 - Pf6N2E2_3836 0.45 -1.4
4,470,076 - Pf6N2E2_3836 0.45 -0.8
4,470,392 + Pf6N2E2_3836 0.86 -1.0
4,470,392 + Pf6N2E2_3836 0.86 +1.6
4,470,392 + Pf6N2E2_3836 0.86 -1.0
4,470,392 + Pf6N2E2_3836 0.86 -0.6
4,470,392 + Pf6N2E2_3836 0.86 -0.4
4,470,393 - Pf6N2E2_3836 0.86 -2.2
4,470,573 - +0.7
4,470,581 + +0.5
4,470,582 - +0.2
4,470,692 + Pf6N2E2_3837 0.15 +1.2
4,470,693 - Pf6N2E2_3837 0.15 +0.8
4,470,693 - Pf6N2E2_3837 0.15 +0.3
4,470,693 - Pf6N2E2_3837 0.15 -2.4

Or see this region's nucleotide sequence