Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3762 and Pf6N2E2_3763 overlap by 36 nucleotides Pf6N2E2_3763 and Pf6N2E2_3764 are separated by 106 nucleotides Pf6N2E2_3764 and Pf6N2E2_3765 are separated by 11 nucleotides
Pf6N2E2_3762 - NADP-dependent malic enzyme (EC 1.1.1.40), at 4,384,473 to 4,385,741
_3762
Pf6N2E2_3763 - hypothetical protein, at 4,385,706 to 4,385,819
_3763
Pf6N2E2_3764 - Thermonuclease family protein, at 4,385,926 to 4,386,738
_3764
Pf6N2E2_3765 - LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent, at 4,386,750 to 4,386,974
_3765
Position (kb)
4385
4386 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4384.788 kb on + strand, within Pf6N2E2_3762 at 4384.789 kb on - strand, within Pf6N2E2_3762 at 4384.811 kb on - strand, within Pf6N2E2_3762 at 4385.041 kb on + strand, within Pf6N2E2_3762 at 4385.041 kb on + strand, within Pf6N2E2_3762 at 4385.041 kb on + strand, within Pf6N2E2_3762 at 4385.041 kb on + strand, within Pf6N2E2_3762 at 4385.042 kb on - strand, within Pf6N2E2_3762 at 4385.042 kb on - strand, within Pf6N2E2_3762 at 4385.427 kb on + strand, within Pf6N2E2_3762 at 4385.427 kb on + strand, within Pf6N2E2_3762 at 4385.427 kb on + strand, within Pf6N2E2_3762 at 4385.428 kb on - strand, within Pf6N2E2_3762 at 4385.504 kb on + strand, within Pf6N2E2_3762 at 4385.566 kb on + strand, within Pf6N2E2_3762 at 4385.566 kb on + strand, within Pf6N2E2_3762 at 4385.566 kb on + strand, within Pf6N2E2_3762 at 4385.567 kb on - strand, within Pf6N2E2_3762 at 4385.567 kb on - strand, within Pf6N2E2_3762 at 4385.567 kb on - strand, within Pf6N2E2_3762 at 4385.567 kb on - strand, within Pf6N2E2_3762 at 4385.702 kb on + strand at 4385.759 kb on + strand, within Pf6N2E2_3763 at 4385.760 kb on - strand, within Pf6N2E2_3763 at 4385.760 kb on - strand, within Pf6N2E2_3763 at 4386.377 kb on + strand, within Pf6N2E2_3764 at 4386.377 kb on + strand, within Pf6N2E2_3764 at 4386.377 kb on + strand, within Pf6N2E2_3764 at 4386.377 kb on + strand, within Pf6N2E2_3764 at 4386.378 kb on - strand, within Pf6N2E2_3764 at 4386.378 kb on - strand, within Pf6N2E2_3764 at 4386.378 kb on - strand, within Pf6N2E2_3764 at 4386.401 kb on + strand, within Pf6N2E2_3764 at 4386.402 kb on - strand, within Pf6N2E2_3764 at 4386.402 kb on - strand, within Pf6N2E2_3764 at 4386.575 kb on + strand, within Pf6N2E2_3764 at 4386.575 kb on + strand, within Pf6N2E2_3764 at 4386.575 kb on + strand, within Pf6N2E2_3764 at 4386.576 kb on - strand, within Pf6N2E2_3764 at 4386.576 kb on - strand, within Pf6N2E2_3764 at 4386.576 kb on - strand, within Pf6N2E2_3764 at 4386.576 kb on - strand, within Pf6N2E2_3764
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,384,788 + Pf6N2E2_3762 0.25 -0.2 4,384,789 - Pf6N2E2_3762 0.25 +0.5 4,384,811 - Pf6N2E2_3762 0.27 +1.2 4,385,041 + Pf6N2E2_3762 0.45 +1.7 4,385,041 + Pf6N2E2_3762 0.45 +0.6 4,385,041 + Pf6N2E2_3762 0.45 -0.2 4,385,041 + Pf6N2E2_3762 0.45 +1.4 4,385,042 - Pf6N2E2_3762 0.45 -0.0 4,385,042 - Pf6N2E2_3762 0.45 +0.5 4,385,427 + Pf6N2E2_3762 0.75 -1.2 4,385,427 + Pf6N2E2_3762 0.75 +0.9 4,385,427 + Pf6N2E2_3762 0.75 +0.5 4,385,428 - Pf6N2E2_3762 0.75 +1.7 4,385,504 + Pf6N2E2_3762 0.81 +3.5 4,385,566 + Pf6N2E2_3762 0.86 +0.3 4,385,566 + Pf6N2E2_3762 0.86 -1.4 4,385,566 + Pf6N2E2_3762 0.86 -0.1 4,385,567 - Pf6N2E2_3762 0.86 -0.3 4,385,567 - Pf6N2E2_3762 0.86 +0.3 4,385,567 - Pf6N2E2_3762 0.86 +0.2 4,385,567 - Pf6N2E2_3762 0.86 -1.7 4,385,702 + -0.1 4,385,759 + Pf6N2E2_3763 0.46 -1.3 4,385,760 - Pf6N2E2_3763 0.47 +0.3 4,385,760 - Pf6N2E2_3763 0.47 -1.1 4,386,377 + Pf6N2E2_3764 0.55 -0.2 4,386,377 + Pf6N2E2_3764 0.55 -0.6 4,386,377 + Pf6N2E2_3764 0.55 +0.6 4,386,377 + Pf6N2E2_3764 0.55 -0.6 4,386,378 - Pf6N2E2_3764 0.56 +0.2 4,386,378 - Pf6N2E2_3764 0.56 -0.1 4,386,378 - Pf6N2E2_3764 0.56 +0.3 4,386,401 + Pf6N2E2_3764 0.58 +1.2 4,386,402 - Pf6N2E2_3764 0.59 -0.8 4,386,402 - Pf6N2E2_3764 0.59 +0.3 4,386,575 + Pf6N2E2_3764 0.80 +0.4 4,386,575 + Pf6N2E2_3764 0.80 +2.2 4,386,575 + Pf6N2E2_3764 0.80 -0.1 4,386,576 - Pf6N2E2_3764 0.80 +0.2 4,386,576 - Pf6N2E2_3764 0.80 +0.1 4,386,576 - Pf6N2E2_3764 0.80 +0.1 4,386,576 - Pf6N2E2_3764 0.80 -0.0
Or see this region's nucleotide sequence