Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3750 and Pf6N2E2_3751 are separated by 220 nucleotides Pf6N2E2_3751 and Pf6N2E2_3752 are separated by 33 nucleotides
Pf6N2E2_3750 - Uroporphyrinogen III decarboxylase (EC 4.1.1.37), at 4,365,708 to 4,366,775
_3750
Pf6N2E2_3751 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 4,366,996 to 4,368,414
_3751
Pf6N2E2_3752 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 4,368,448 to 4,372,896
_3752
Position (kb)
4366
4367
4368
4369 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4366.851 kb on - strand at 4366.855 kb on - strand at 4366.855 kb on - strand at 4366.855 kb on - strand at 4366.878 kb on - strand at 4366.892 kb on - strand at 4366.892 kb on - strand at 4366.892 kb on - strand at 4366.892 kb on - strand at 4367.127 kb on - strand at 4367.378 kb on + strand, within Pf6N2E2_3751 at 4367.378 kb on + strand, within Pf6N2E2_3751 at 4367.379 kb on - strand, within Pf6N2E2_3751 at 4367.379 kb on - strand, within Pf6N2E2_3751 at 4367.456 kb on + strand, within Pf6N2E2_3751 at 4367.634 kb on - strand, within Pf6N2E2_3751 at 4367.675 kb on + strand, within Pf6N2E2_3751 at 4367.675 kb on + strand, within Pf6N2E2_3751 at 4367.675 kb on + strand, within Pf6N2E2_3751 at 4367.675 kb on + strand, within Pf6N2E2_3751 at 4367.675 kb on + strand, within Pf6N2E2_3751 at 4367.675 kb on + strand, within Pf6N2E2_3751 at 4367.675 kb on + strand, within Pf6N2E2_3751 at 4367.675 kb on + strand, within Pf6N2E2_3751 at 4367.675 kb on + strand, within Pf6N2E2_3751 at 4367.676 kb on - strand, within Pf6N2E2_3751 at 4367.676 kb on - strand, within Pf6N2E2_3751 at 4367.676 kb on - strand, within Pf6N2E2_3751 at 4367.676 kb on - strand, within Pf6N2E2_3751 at 4367.676 kb on - strand, within Pf6N2E2_3751 at 4367.676 kb on - strand, within Pf6N2E2_3751 at 4367.676 kb on - strand, within Pf6N2E2_3751 at 4367.676 kb on - strand, within Pf6N2E2_3751 at 4367.676 kb on - strand, within Pf6N2E2_3751 at 4367.681 kb on + strand, within Pf6N2E2_3751 at 4367.681 kb on + strand, within Pf6N2E2_3751 at 4367.681 kb on + strand, within Pf6N2E2_3751 at 4367.681 kb on + strand, within Pf6N2E2_3751 at 4367.681 kb on + strand, within Pf6N2E2_3751 at 4367.681 kb on + strand, within Pf6N2E2_3751 at 4367.681 kb on + strand, within Pf6N2E2_3751 at 4367.682 kb on - strand, within Pf6N2E2_3751 at 4367.682 kb on - strand, within Pf6N2E2_3751 at 4367.682 kb on - strand, within Pf6N2E2_3751 at 4367.682 kb on - strand, within Pf6N2E2_3751 at 4367.711 kb on + strand, within Pf6N2E2_3751 at 4367.711 kb on + strand, within Pf6N2E2_3751 at 4367.711 kb on + strand, within Pf6N2E2_3751 at 4367.712 kb on - strand, within Pf6N2E2_3751 at 4368.032 kb on + strand, within Pf6N2E2_3751 at 4368.032 kb on + strand, within Pf6N2E2_3751 at 4368.032 kb on + strand, within Pf6N2E2_3751 at 4368.032 kb on + strand, within Pf6N2E2_3751 at 4368.032 kb on + strand, within Pf6N2E2_3751 at 4368.032 kb on + strand, within Pf6N2E2_3751 at 4368.032 kb on + strand, within Pf6N2E2_3751 at 4368.032 kb on + strand, within Pf6N2E2_3751 at 4368.032 kb on + strand, within Pf6N2E2_3751 at 4368.033 kb on - strand, within Pf6N2E2_3751 at 4368.033 kb on - strand, within Pf6N2E2_3751 at 4368.033 kb on - strand, within Pf6N2E2_3751 at 4368.033 kb on - strand, within Pf6N2E2_3751 at 4368.033 kb on - strand, within Pf6N2E2_3751 at 4368.312 kb on - strand at 4368.312 kb on - strand at 4368.312 kb on - strand at 4368.418 kb on + strand at 4368.418 kb on + strand at 4368.418 kb on + strand at 4368.418 kb on + strand at 4368.419 kb on - strand at 4368.446 kb on + strand at 4368.530 kb on + strand at 4368.531 kb on - strand at 4368.531 kb on - strand at 4368.587 kb on + strand at 4368.588 kb on - strand at 4368.588 kb on - strand at 4368.588 kb on - strand at 4368.588 kb on - strand at 4368.710 kb on + strand at 4368.744 kb on + strand at 4368.744 kb on + strand at 4368.744 kb on + strand at 4368.745 kb on - strand at 4368.745 kb on - strand at 4368.788 kb on + strand at 4368.788 kb on + strand at 4368.789 kb on - strand at 4368.840 kb on + strand at 4368.944 kb on + strand, within Pf6N2E2_3752 at 4368.944 kb on + strand, within Pf6N2E2_3752 at 4368.944 kb on + strand, within Pf6N2E2_3752 at 4368.945 kb on - strand, within Pf6N2E2_3752 at 4368.945 kb on - strand, within Pf6N2E2_3752 at 4369.004 kb on + strand, within Pf6N2E2_3752 at 4369.004 kb on + strand, within Pf6N2E2_3752 at 4369.005 kb on - strand, within Pf6N2E2_3752 at 4369.028 kb on + strand, within Pf6N2E2_3752 at 4369.028 kb on + strand, within Pf6N2E2_3752 at 4369.028 kb on + strand, within Pf6N2E2_3752 at 4369.028 kb on + strand, within Pf6N2E2_3752 at 4369.028 kb on + strand, within Pf6N2E2_3752 at 4369.028 kb on + strand, within Pf6N2E2_3752 at 4369.028 kb on + strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.029 kb on - strand, within Pf6N2E2_3752 at 4369.186 kb on - strand, within Pf6N2E2_3752 at 4369.322 kb on + strand, within Pf6N2E2_3752 at 4369.322 kb on + strand, within Pf6N2E2_3752 at 4369.323 kb on - strand, within Pf6N2E2_3752
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,366,851 - -1.2 4,366,855 - -0.3 4,366,855 - -1.2 4,366,855 - -0.3 4,366,878 - -1.1 4,366,892 - +0.8 4,366,892 - -0.4 4,366,892 - +0.6 4,366,892 - -0.0 4,367,127 - -3.8 4,367,378 + Pf6N2E2_3751 0.27 -2.1 4,367,378 + Pf6N2E2_3751 0.27 -1.0 4,367,379 - Pf6N2E2_3751 0.27 -1.7 4,367,379 - Pf6N2E2_3751 0.27 -2.0 4,367,456 + Pf6N2E2_3751 0.32 -0.4 4,367,634 - Pf6N2E2_3751 0.45 -1.3 4,367,675 + Pf6N2E2_3751 0.48 -2.5 4,367,675 + Pf6N2E2_3751 0.48 -2.2 4,367,675 + Pf6N2E2_3751 0.48 -2.2 4,367,675 + Pf6N2E2_3751 0.48 -2.1 4,367,675 + Pf6N2E2_3751 0.48 -1.4 4,367,675 + Pf6N2E2_3751 0.48 -2.5 4,367,675 + Pf6N2E2_3751 0.48 -2.8 4,367,675 + Pf6N2E2_3751 0.48 -3.0 4,367,675 + Pf6N2E2_3751 0.48 -1.5 4,367,676 - Pf6N2E2_3751 0.48 -2.6 4,367,676 - Pf6N2E2_3751 0.48 -0.3 4,367,676 - Pf6N2E2_3751 0.48 -2.8 4,367,676 - Pf6N2E2_3751 0.48 -1.5 4,367,676 - Pf6N2E2_3751 0.48 -3.1 4,367,676 - Pf6N2E2_3751 0.48 -2.6 4,367,676 - Pf6N2E2_3751 0.48 -4.1 4,367,676 - Pf6N2E2_3751 0.48 -3.2 4,367,676 - Pf6N2E2_3751 0.48 -2.9 4,367,681 + Pf6N2E2_3751 0.48 -2.8 4,367,681 + Pf6N2E2_3751 0.48 +1.2 4,367,681 + Pf6N2E2_3751 0.48 -2.6 4,367,681 + Pf6N2E2_3751 0.48 -2.0 4,367,681 + Pf6N2E2_3751 0.48 -1.5 4,367,681 + Pf6N2E2_3751 0.48 -1.9 4,367,681 + Pf6N2E2_3751 0.48 -3.0 4,367,682 - Pf6N2E2_3751 0.48 -2.9 4,367,682 - Pf6N2E2_3751 0.48 +1.7 4,367,682 - Pf6N2E2_3751 0.48 -3.1 4,367,682 - Pf6N2E2_3751 0.48 -2.1 4,367,711 + Pf6N2E2_3751 0.50 -2.7 4,367,711 + Pf6N2E2_3751 0.50 +2.7 4,367,711 + Pf6N2E2_3751 0.50 -2.8 4,367,712 - Pf6N2E2_3751 0.50 -3.7 4,368,032 + Pf6N2E2_3751 0.73 -2.4 4,368,032 + Pf6N2E2_3751 0.73 -1.6 4,368,032 + Pf6N2E2_3751 0.73 -2.6 4,368,032 + Pf6N2E2_3751 0.73 -2.8 4,368,032 + Pf6N2E2_3751 0.73 -2.0 4,368,032 + Pf6N2E2_3751 0.73 -1.4 4,368,032 + Pf6N2E2_3751 0.73 -2.7 4,368,032 + Pf6N2E2_3751 0.73 -2.0 4,368,032 + Pf6N2E2_3751 0.73 -0.8 4,368,033 - Pf6N2E2_3751 0.73 -2.7 4,368,033 - Pf6N2E2_3751 0.73 -1.8 4,368,033 - Pf6N2E2_3751 0.73 -2.5 4,368,033 - Pf6N2E2_3751 0.73 -2.8 4,368,033 - Pf6N2E2_3751 0.73 -2.6 4,368,312 - -2.8 4,368,312 - -2.8 4,368,312 - -2.4 4,368,418 + -1.7 4,368,418 + -2.4 4,368,418 + -2.7 4,368,418 + -2.5 4,368,419 - -1.1 4,368,446 + +1.7 4,368,530 + -1.8 4,368,531 - -0.5 4,368,531 - -2.5 4,368,587 + -2.8 4,368,588 - -2.9 4,368,588 - -2.2 4,368,588 - -1.8 4,368,588 - -3.3 4,368,710 + -2.1 4,368,744 + +1.4 4,368,744 + -2.7 4,368,744 + +0.4 4,368,745 - +0.7 4,368,745 - -2.2 4,368,788 + -0.7 4,368,788 + -1.8 4,368,789 - -3.2 4,368,840 + -2.5 4,368,944 + Pf6N2E2_3752 0.11 -0.4 4,368,944 + Pf6N2E2_3752 0.11 -3.4 4,368,944 + Pf6N2E2_3752 0.11 -2.7 4,368,945 - Pf6N2E2_3752 0.11 -2.1 4,368,945 - Pf6N2E2_3752 0.11 -1.6 4,369,004 + Pf6N2E2_3752 0.12 -2.8 4,369,004 + Pf6N2E2_3752 0.12 -2.1 4,369,005 - Pf6N2E2_3752 0.13 -3.2 4,369,028 + Pf6N2E2_3752 0.13 +0.2 4,369,028 + Pf6N2E2_3752 0.13 -1.9 4,369,028 + Pf6N2E2_3752 0.13 -2.5 4,369,028 + Pf6N2E2_3752 0.13 -0.8 4,369,028 + Pf6N2E2_3752 0.13 -2.1 4,369,028 + Pf6N2E2_3752 0.13 -2.7 4,369,028 + Pf6N2E2_3752 0.13 -1.7 4,369,029 - Pf6N2E2_3752 0.13 -1.4 4,369,029 - Pf6N2E2_3752 0.13 +1.0 4,369,029 - Pf6N2E2_3752 0.13 -2.3 4,369,029 - Pf6N2E2_3752 0.13 -2.5 4,369,029 - Pf6N2E2_3752 0.13 -0.3 4,369,029 - Pf6N2E2_3752 0.13 -3.3 4,369,029 - Pf6N2E2_3752 0.13 -2.3 4,369,029 - Pf6N2E2_3752 0.13 -3.2 4,369,029 - Pf6N2E2_3752 0.13 -1.8 4,369,029 - Pf6N2E2_3752 0.13 -1.6 4,369,029 - Pf6N2E2_3752 0.13 -0.6 4,369,029 - Pf6N2E2_3752 0.13 -2.5 4,369,186 - Pf6N2E2_3752 0.17 -2.7 4,369,322 + Pf6N2E2_3752 0.20 -2.4 4,369,322 + Pf6N2E2_3752 0.20 -2.0 4,369,323 - Pf6N2E2_3752 0.20 -2.3
Or see this region's nucleotide sequence