Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3751

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3750 and Pf6N2E2_3751 are separated by 220 nucleotidesPf6N2E2_3751 and Pf6N2E2_3752 are separated by 33 nucleotides Pf6N2E2_3750 - Uroporphyrinogen III decarboxylase (EC 4.1.1.37), at 4,365,708 to 4,366,775 _3750 Pf6N2E2_3751 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 4,366,996 to 4,368,414 _3751 Pf6N2E2_3752 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 4,368,448 to 4,372,896 _3752 Position (kb) 4366 4367 4368 4369Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4366.851 kb on - strandat 4366.855 kb on - strandat 4366.855 kb on - strandat 4366.855 kb on - strandat 4366.878 kb on - strandat 4366.892 kb on - strandat 4366.892 kb on - strandat 4366.892 kb on - strandat 4366.892 kb on - strandat 4367.127 kb on - strandat 4367.378 kb on + strand, within Pf6N2E2_3751at 4367.378 kb on + strand, within Pf6N2E2_3751at 4367.379 kb on - strand, within Pf6N2E2_3751at 4367.379 kb on - strand, within Pf6N2E2_3751at 4367.456 kb on + strand, within Pf6N2E2_3751at 4367.634 kb on - strand, within Pf6N2E2_3751at 4367.675 kb on + strand, within Pf6N2E2_3751at 4367.675 kb on + strand, within Pf6N2E2_3751at 4367.675 kb on + strand, within Pf6N2E2_3751at 4367.675 kb on + strand, within Pf6N2E2_3751at 4367.675 kb on + strand, within Pf6N2E2_3751at 4367.675 kb on + strand, within Pf6N2E2_3751at 4367.675 kb on + strand, within Pf6N2E2_3751at 4367.675 kb on + strand, within Pf6N2E2_3751at 4367.675 kb on + strand, within Pf6N2E2_3751at 4367.676 kb on - strand, within Pf6N2E2_3751at 4367.676 kb on - strand, within Pf6N2E2_3751at 4367.676 kb on - strand, within Pf6N2E2_3751at 4367.676 kb on - strand, within Pf6N2E2_3751at 4367.676 kb on - strand, within Pf6N2E2_3751at 4367.676 kb on - strand, within Pf6N2E2_3751at 4367.676 kb on - strand, within Pf6N2E2_3751at 4367.676 kb on - strand, within Pf6N2E2_3751at 4367.676 kb on - strand, within Pf6N2E2_3751at 4367.681 kb on + strand, within Pf6N2E2_3751at 4367.681 kb on + strand, within Pf6N2E2_3751at 4367.681 kb on + strand, within Pf6N2E2_3751at 4367.681 kb on + strand, within Pf6N2E2_3751at 4367.681 kb on + strand, within Pf6N2E2_3751at 4367.681 kb on + strand, within Pf6N2E2_3751at 4367.681 kb on + strand, within Pf6N2E2_3751at 4367.682 kb on - strand, within Pf6N2E2_3751at 4367.682 kb on - strand, within Pf6N2E2_3751at 4367.682 kb on - strand, within Pf6N2E2_3751at 4367.682 kb on - strand, within Pf6N2E2_3751at 4367.711 kb on + strand, within Pf6N2E2_3751at 4367.711 kb on + strand, within Pf6N2E2_3751at 4367.711 kb on + strand, within Pf6N2E2_3751at 4367.712 kb on - strand, within Pf6N2E2_3751at 4368.032 kb on + strand, within Pf6N2E2_3751at 4368.032 kb on + strand, within Pf6N2E2_3751at 4368.032 kb on + strand, within Pf6N2E2_3751at 4368.032 kb on + strand, within Pf6N2E2_3751at 4368.032 kb on + strand, within Pf6N2E2_3751at 4368.032 kb on + strand, within Pf6N2E2_3751at 4368.032 kb on + strand, within Pf6N2E2_3751at 4368.032 kb on + strand, within Pf6N2E2_3751at 4368.032 kb on + strand, within Pf6N2E2_3751at 4368.033 kb on - strand, within Pf6N2E2_3751at 4368.033 kb on - strand, within Pf6N2E2_3751at 4368.033 kb on - strand, within Pf6N2E2_3751at 4368.033 kb on - strand, within Pf6N2E2_3751at 4368.033 kb on - strand, within Pf6N2E2_3751at 4368.312 kb on - strandat 4368.312 kb on - strandat 4368.312 kb on - strandat 4368.418 kb on + strandat 4368.418 kb on + strandat 4368.418 kb on + strandat 4368.418 kb on + strandat 4368.419 kb on - strandat 4368.446 kb on + strandat 4368.530 kb on + strandat 4368.531 kb on - strandat 4368.531 kb on - strandat 4368.587 kb on + strandat 4368.588 kb on - strandat 4368.588 kb on - strandat 4368.588 kb on - strandat 4368.588 kb on - strandat 4368.710 kb on + strandat 4368.744 kb on + strandat 4368.744 kb on + strandat 4368.744 kb on + strandat 4368.745 kb on - strandat 4368.745 kb on - strandat 4368.788 kb on + strandat 4368.788 kb on + strandat 4368.789 kb on - strandat 4368.840 kb on + strandat 4368.944 kb on + strand, within Pf6N2E2_3752at 4368.944 kb on + strand, within Pf6N2E2_3752at 4368.944 kb on + strand, within Pf6N2E2_3752at 4368.945 kb on - strand, within Pf6N2E2_3752at 4368.945 kb on - strand, within Pf6N2E2_3752at 4369.004 kb on + strand, within Pf6N2E2_3752at 4369.004 kb on + strand, within Pf6N2E2_3752at 4369.005 kb on - strand, within Pf6N2E2_3752at 4369.028 kb on + strand, within Pf6N2E2_3752at 4369.028 kb on + strand, within Pf6N2E2_3752at 4369.028 kb on + strand, within Pf6N2E2_3752at 4369.028 kb on + strand, within Pf6N2E2_3752at 4369.028 kb on + strand, within Pf6N2E2_3752at 4369.028 kb on + strand, within Pf6N2E2_3752at 4369.028 kb on + strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.029 kb on - strand, within Pf6N2E2_3752at 4369.186 kb on - strand, within Pf6N2E2_3752at 4369.322 kb on + strand, within Pf6N2E2_3752at 4369.322 kb on + strand, within Pf6N2E2_3752at 4369.323 kb on - strand, within Pf6N2E2_3752

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
4,366,851 - -1.2
4,366,855 - -0.3
4,366,855 - -1.2
4,366,855 - -0.3
4,366,878 - -1.1
4,366,892 - +0.8
4,366,892 - -0.4
4,366,892 - +0.6
4,366,892 - -0.0
4,367,127 - -3.8
4,367,378 + Pf6N2E2_3751 0.27 -2.1
4,367,378 + Pf6N2E2_3751 0.27 -1.0
4,367,379 - Pf6N2E2_3751 0.27 -1.7
4,367,379 - Pf6N2E2_3751 0.27 -2.0
4,367,456 + Pf6N2E2_3751 0.32 -0.4
4,367,634 - Pf6N2E2_3751 0.45 -1.3
4,367,675 + Pf6N2E2_3751 0.48 -2.5
4,367,675 + Pf6N2E2_3751 0.48 -2.2
4,367,675 + Pf6N2E2_3751 0.48 -2.2
4,367,675 + Pf6N2E2_3751 0.48 -2.1
4,367,675 + Pf6N2E2_3751 0.48 -1.4
4,367,675 + Pf6N2E2_3751 0.48 -2.5
4,367,675 + Pf6N2E2_3751 0.48 -2.8
4,367,675 + Pf6N2E2_3751 0.48 -3.0
4,367,675 + Pf6N2E2_3751 0.48 -1.5
4,367,676 - Pf6N2E2_3751 0.48 -2.6
4,367,676 - Pf6N2E2_3751 0.48 -0.3
4,367,676 - Pf6N2E2_3751 0.48 -2.8
4,367,676 - Pf6N2E2_3751 0.48 -1.5
4,367,676 - Pf6N2E2_3751 0.48 -3.1
4,367,676 - Pf6N2E2_3751 0.48 -2.6
4,367,676 - Pf6N2E2_3751 0.48 -4.1
4,367,676 - Pf6N2E2_3751 0.48 -3.2
4,367,676 - Pf6N2E2_3751 0.48 -2.9
4,367,681 + Pf6N2E2_3751 0.48 -2.8
4,367,681 + Pf6N2E2_3751 0.48 +1.2
4,367,681 + Pf6N2E2_3751 0.48 -2.6
4,367,681 + Pf6N2E2_3751 0.48 -2.0
4,367,681 + Pf6N2E2_3751 0.48 -1.5
4,367,681 + Pf6N2E2_3751 0.48 -1.9
4,367,681 + Pf6N2E2_3751 0.48 -3.0
4,367,682 - Pf6N2E2_3751 0.48 -2.9
4,367,682 - Pf6N2E2_3751 0.48 +1.7
4,367,682 - Pf6N2E2_3751 0.48 -3.1
4,367,682 - Pf6N2E2_3751 0.48 -2.1
4,367,711 + Pf6N2E2_3751 0.50 -2.7
4,367,711 + Pf6N2E2_3751 0.50 +2.7
4,367,711 + Pf6N2E2_3751 0.50 -2.8
4,367,712 - Pf6N2E2_3751 0.50 -3.7
4,368,032 + Pf6N2E2_3751 0.73 -2.4
4,368,032 + Pf6N2E2_3751 0.73 -1.6
4,368,032 + Pf6N2E2_3751 0.73 -2.6
4,368,032 + Pf6N2E2_3751 0.73 -2.8
4,368,032 + Pf6N2E2_3751 0.73 -2.0
4,368,032 + Pf6N2E2_3751 0.73 -1.4
4,368,032 + Pf6N2E2_3751 0.73 -2.7
4,368,032 + Pf6N2E2_3751 0.73 -2.0
4,368,032 + Pf6N2E2_3751 0.73 -0.8
4,368,033 - Pf6N2E2_3751 0.73 -2.7
4,368,033 - Pf6N2E2_3751 0.73 -1.8
4,368,033 - Pf6N2E2_3751 0.73 -2.5
4,368,033 - Pf6N2E2_3751 0.73 -2.8
4,368,033 - Pf6N2E2_3751 0.73 -2.6
4,368,312 - -2.8
4,368,312 - -2.8
4,368,312 - -2.4
4,368,418 + -1.7
4,368,418 + -2.4
4,368,418 + -2.7
4,368,418 + -2.5
4,368,419 - -1.1
4,368,446 + +1.7
4,368,530 + -1.8
4,368,531 - -0.5
4,368,531 - -2.5
4,368,587 + -2.8
4,368,588 - -2.9
4,368,588 - -2.2
4,368,588 - -1.8
4,368,588 - -3.3
4,368,710 + -2.1
4,368,744 + +1.4
4,368,744 + -2.7
4,368,744 + +0.4
4,368,745 - +0.7
4,368,745 - -2.2
4,368,788 + -0.7
4,368,788 + -1.8
4,368,789 - -3.2
4,368,840 + -2.5
4,368,944 + Pf6N2E2_3752 0.11 -0.4
4,368,944 + Pf6N2E2_3752 0.11 -3.4
4,368,944 + Pf6N2E2_3752 0.11 -2.7
4,368,945 - Pf6N2E2_3752 0.11 -2.1
4,368,945 - Pf6N2E2_3752 0.11 -1.6
4,369,004 + Pf6N2E2_3752 0.12 -2.8
4,369,004 + Pf6N2E2_3752 0.12 -2.1
4,369,005 - Pf6N2E2_3752 0.13 -3.2
4,369,028 + Pf6N2E2_3752 0.13 +0.2
4,369,028 + Pf6N2E2_3752 0.13 -1.9
4,369,028 + Pf6N2E2_3752 0.13 -2.5
4,369,028 + Pf6N2E2_3752 0.13 -0.8
4,369,028 + Pf6N2E2_3752 0.13 -2.1
4,369,028 + Pf6N2E2_3752 0.13 -2.7
4,369,028 + Pf6N2E2_3752 0.13 -1.7
4,369,029 - Pf6N2E2_3752 0.13 -1.4
4,369,029 - Pf6N2E2_3752 0.13 +1.0
4,369,029 - Pf6N2E2_3752 0.13 -2.3
4,369,029 - Pf6N2E2_3752 0.13 -2.5
4,369,029 - Pf6N2E2_3752 0.13 -0.3
4,369,029 - Pf6N2E2_3752 0.13 -3.3
4,369,029 - Pf6N2E2_3752 0.13 -2.3
4,369,029 - Pf6N2E2_3752 0.13 -3.2
4,369,029 - Pf6N2E2_3752 0.13 -1.8
4,369,029 - Pf6N2E2_3752 0.13 -1.6
4,369,029 - Pf6N2E2_3752 0.13 -0.6
4,369,029 - Pf6N2E2_3752 0.13 -2.5
4,369,186 - Pf6N2E2_3752 0.17 -2.7
4,369,322 + Pf6N2E2_3752 0.20 -2.4
4,369,322 + Pf6N2E2_3752 0.20 -2.0
4,369,323 - Pf6N2E2_3752 0.20 -2.3

Or see this region's nucleotide sequence