Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3726

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3724 and Pf6N2E2_3725 overlap by 4 nucleotidesPf6N2E2_3725 and Pf6N2E2_3726 overlap by 4 nucleotidesPf6N2E2_3726 and Pf6N2E2_3727 overlap by 4 nucleotidesPf6N2E2_3727 and Pf6N2E2_3728 overlap by 4 nucleotides Pf6N2E2_3724 - FIG025233: SAM-dependent methyltransferases, at 4,338,538 to 4,339,266 _3724 Pf6N2E2_3725 - FIG085779: Lipoprotein, at 4,339,263 to 4,339,745 _3725 Pf6N2E2_3726 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 4,339,742 to 4,340,938 _3726 Pf6N2E2_3727 - 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60), at 4,340,935 to 4,341,402 _3727 Pf6N2E2_3728 - 3-oxoacyl-[ACP] reductase (EC 1.1.1.100), at 4,341,399 to 4,342,127 _3728 Position (kb) 4339 4340 4341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4338.953 kb on + strand, within Pf6N2E2_3724at 4339.000 kb on + strand, within Pf6N2E2_3724at 4339.000 kb on + strand, within Pf6N2E2_3724at 4339.000 kb on + strand, within Pf6N2E2_3724at 4339.001 kb on - strand, within Pf6N2E2_3724at 4339.001 kb on - strand, within Pf6N2E2_3724at 4339.069 kb on + strand, within Pf6N2E2_3724at 4339.602 kb on + strand, within Pf6N2E2_3725at 4339.603 kb on - strand, within Pf6N2E2_3725at 4339.663 kb on - strand, within Pf6N2E2_3725at 4339.751 kb on + strandat 4339.752 kb on - strandat 4340.010 kb on - strand, within Pf6N2E2_3726at 4340.088 kb on - strand, within Pf6N2E2_3726at 4340.118 kb on - strand, within Pf6N2E2_3726at 4340.193 kb on - strand, within Pf6N2E2_3726at 4340.193 kb on - strand, within Pf6N2E2_3726at 4340.491 kb on + strand, within Pf6N2E2_3726at 4340.491 kb on + strand, within Pf6N2E2_3726at 4340.492 kb on - strand, within Pf6N2E2_3726at 4340.583 kb on - strand, within Pf6N2E2_3726at 4340.761 kb on + strand, within Pf6N2E2_3726at 4341.338 kb on + strand, within Pf6N2E2_3727at 4341.339 kb on - strand, within Pf6N2E2_3727at 4341.339 kb on - strand, within Pf6N2E2_3727at 4341.364 kb on + strandat 4341.639 kb on + strand, within Pf6N2E2_3728at 4341.639 kb on + strand, within Pf6N2E2_3728at 4341.640 kb on - strand, within Pf6N2E2_3728at 4341.640 kb on - strand, within Pf6N2E2_3728at 4341.640 kb on - strand, within Pf6N2E2_3728at 4341.643 kb on - strand, within Pf6N2E2_3728at 4341.744 kb on + strand, within Pf6N2E2_3728at 4341.745 kb on - strand, within Pf6N2E2_3728at 4341.745 kb on - strand, within Pf6N2E2_3728at 4341.855 kb on + strand, within Pf6N2E2_3728at 4341.855 kb on + strand, within Pf6N2E2_3728at 4341.855 kb on + strand, within Pf6N2E2_3728at 4341.855 kb on + strand, within Pf6N2E2_3728at 4341.855 kb on + strand, within Pf6N2E2_3728at 4341.856 kb on - strand, within Pf6N2E2_3728at 4341.856 kb on - strand, within Pf6N2E2_3728at 4341.856 kb on - strand, within Pf6N2E2_3728at 4341.856 kb on - strand, within Pf6N2E2_3728at 4341.856 kb on - strand, within Pf6N2E2_3728at 4341.856 kb on - strand, within Pf6N2E2_3728

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,338,953 + Pf6N2E2_3724 0.57 -1.2
4,339,000 + Pf6N2E2_3724 0.63 -0.7
4,339,000 + Pf6N2E2_3724 0.63 +0.7
4,339,000 + Pf6N2E2_3724 0.63 -1.4
4,339,001 - Pf6N2E2_3724 0.64 +0.1
4,339,001 - Pf6N2E2_3724 0.64 -0.9
4,339,069 + Pf6N2E2_3724 0.73 +0.5
4,339,602 + Pf6N2E2_3725 0.70 -0.4
4,339,603 - Pf6N2E2_3725 0.70 -1.8
4,339,663 - Pf6N2E2_3725 0.83 -0.8
4,339,751 + +1.1
4,339,752 - +0.3
4,340,010 - Pf6N2E2_3726 0.22 -0.4
4,340,088 - Pf6N2E2_3726 0.29 -1.8
4,340,118 - Pf6N2E2_3726 0.31 -1.3
4,340,193 - Pf6N2E2_3726 0.38 -0.2
4,340,193 - Pf6N2E2_3726 0.38 -1.4
4,340,491 + Pf6N2E2_3726 0.63 -0.8
4,340,491 + Pf6N2E2_3726 0.63 -2.0
4,340,492 - Pf6N2E2_3726 0.63 +1.0
4,340,583 - Pf6N2E2_3726 0.70 -1.4
4,340,761 + Pf6N2E2_3726 0.85 -0.8
4,341,338 + Pf6N2E2_3727 0.86 -0.9
4,341,339 - Pf6N2E2_3727 0.86 +0.2
4,341,339 - Pf6N2E2_3727 0.86 -0.5
4,341,364 + -3.0
4,341,639 + Pf6N2E2_3728 0.33 -0.3
4,341,639 + Pf6N2E2_3728 0.33 -0.9
4,341,640 - Pf6N2E2_3728 0.33 +0.1
4,341,640 - Pf6N2E2_3728 0.33 +0.0
4,341,640 - Pf6N2E2_3728 0.33 -0.9
4,341,643 - Pf6N2E2_3728 0.33 +0.1
4,341,744 + Pf6N2E2_3728 0.47 -0.2
4,341,745 - Pf6N2E2_3728 0.47 -0.5
4,341,745 - Pf6N2E2_3728 0.47 -0.8
4,341,855 + Pf6N2E2_3728 0.63 +0.3
4,341,855 + Pf6N2E2_3728 0.63 -0.4
4,341,855 + Pf6N2E2_3728 0.63 +1.9
4,341,855 + Pf6N2E2_3728 0.63 -0.8
4,341,855 + Pf6N2E2_3728 0.63 -0.3
4,341,856 - Pf6N2E2_3728 0.63 -0.2
4,341,856 - Pf6N2E2_3728 0.63 -0.2
4,341,856 - Pf6N2E2_3728 0.63 -0.7
4,341,856 - Pf6N2E2_3728 0.63 -0.3
4,341,856 - Pf6N2E2_3728 0.63 +0.9
4,341,856 - Pf6N2E2_3728 0.63 -0.8

Or see this region's nucleotide sequence