Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3723 and Pf6N2E2_3724 are separated by 10 nucleotides Pf6N2E2_3724 and Pf6N2E2_3725 overlap by 4 nucleotides Pf6N2E2_3725 and Pf6N2E2_3726 overlap by 4 nucleotides
Pf6N2E2_3723 - FIG022199: FAD-binding protein, at 4,337,280 to 4,338,527
_3723
Pf6N2E2_3724 - FIG025233: SAM-dependent methyltransferases, at 4,338,538 to 4,339,266
_3724
Pf6N2E2_3725 - FIG085779: Lipoprotein, at 4,339,263 to 4,339,745
_3725
Pf6N2E2_3726 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 4,339,742 to 4,340,938
_3726
Position (kb)
4339
4340 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4338.339 kb on + strand, within Pf6N2E2_3723 at 4338.339 kb on + strand, within Pf6N2E2_3723 at 4338.544 kb on + strand at 4338.545 kb on - strand at 4338.545 kb on - strand at 4338.545 kb on - strand at 4338.559 kb on + strand at 4338.559 kb on + strand at 4338.560 kb on - strand at 4338.560 kb on - strand at 4338.560 kb on - strand at 4338.724 kb on + strand, within Pf6N2E2_3724 at 4338.725 kb on - strand, within Pf6N2E2_3724 at 4338.953 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.001 kb on - strand, within Pf6N2E2_3724 at 4339.001 kb on - strand, within Pf6N2E2_3724 at 4339.069 kb on + strand, within Pf6N2E2_3724 at 4339.602 kb on + strand, within Pf6N2E2_3725 at 4339.603 kb on - strand, within Pf6N2E2_3725 at 4339.663 kb on - strand, within Pf6N2E2_3725 at 4339.751 kb on + strand at 4339.752 kb on - strand at 4340.010 kb on - strand, within Pf6N2E2_3726 at 4340.088 kb on - strand, within Pf6N2E2_3726 at 4340.118 kb on - strand, within Pf6N2E2_3726 at 4340.193 kb on - strand, within Pf6N2E2_3726 at 4340.193 kb on - strand, within Pf6N2E2_3726 at 4340.491 kb on + strand, within Pf6N2E2_3726 at 4340.491 kb on + strand, within Pf6N2E2_3726 at 4340.492 kb on - strand, within Pf6N2E2_3726 at 4340.583 kb on - strand, within Pf6N2E2_3726
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,338,339 + Pf6N2E2_3723 0.85 -1.6 4,338,339 + Pf6N2E2_3723 0.85 -0.4 4,338,544 + +0.7 4,338,545 - +1.2 4,338,545 - -1.0 4,338,545 - -1.7 4,338,559 + +0.2 4,338,559 + -0.0 4,338,560 - +1.6 4,338,560 - -2.9 4,338,560 - +0.1 4,338,724 + Pf6N2E2_3724 0.26 -0.9 4,338,725 - Pf6N2E2_3724 0.26 -0.4 4,338,953 + Pf6N2E2_3724 0.57 -1.2 4,339,000 + Pf6N2E2_3724 0.63 -0.7 4,339,000 + Pf6N2E2_3724 0.63 +0.7 4,339,000 + Pf6N2E2_3724 0.63 -1.4 4,339,001 - Pf6N2E2_3724 0.64 +0.1 4,339,001 - Pf6N2E2_3724 0.64 -0.9 4,339,069 + Pf6N2E2_3724 0.73 +0.5 4,339,602 + Pf6N2E2_3725 0.70 -0.4 4,339,603 - Pf6N2E2_3725 0.70 -1.8 4,339,663 - Pf6N2E2_3725 0.83 -0.8 4,339,751 + +1.1 4,339,752 - +0.3 4,340,010 - Pf6N2E2_3726 0.22 -0.4 4,340,088 - Pf6N2E2_3726 0.29 -1.8 4,340,118 - Pf6N2E2_3726 0.31 -1.3 4,340,193 - Pf6N2E2_3726 0.38 -0.2 4,340,193 - Pf6N2E2_3726 0.38 -1.4 4,340,491 + Pf6N2E2_3726 0.63 -0.8 4,340,491 + Pf6N2E2_3726 0.63 -2.0 4,340,492 - Pf6N2E2_3726 0.63 +1.0 4,340,583 - Pf6N2E2_3726 0.70 -1.4
Or see this region's nucleotide sequence